Tjp2 (tight junction protein 2) - Rat Genome Database

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Gene: Tjp2 (tight junction protein 2) Rattus norvegicus
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Symbol: Tjp2
Name: tight junction protein 2
RGD ID: 619807
Description: Enables transmembrane transporter binding activity. Predicted to be involved in several processes, including establishment of endothelial intestinal barrier; positive regulation of blood-brain barrier permeability; and protein localization to cell-cell junction. Predicted to act upstream of or within negative regulation of osteoclast development and negative regulation of tumor necrosis factor-mediated signaling pathway. Located in bicellular tight junction. Biomarker of hypertension. Human ortholog(s) of this gene implicated in disease of metabolism and progressive familial intrahepatic cholestasis 4. Orthologous to human TJP2 (tight junction protein 2); INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC108349129; MGC124724; tight junction protein ZO-2; uncharacterized LOC108349129; ZO-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81231,136,218 - 231,264,750 (-)NCBIGRCr8
mRatBN7.21221,709,745 - 221,838,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,709,745 - 221,838,295 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1230,159,462 - 230,287,384 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01237,089,516 - 237,217,442 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01229,907,552 - 230,035,465 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01241,945,816 - 242,084,044 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1241,945,841 - 242,083,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01249,224,590 - 249,358,779 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,475,386 - 227,574,457 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,639,414 - 227,668,771 (-)NCBI
Celera1218,921,753 - 219,049,897 (-)NCBICelera
Cytogenetic Map1q51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
Tjp2Ratdisease of metabolism susceptibilityISOTJP2 (Homo sapiens)734629DNA:transition: more ...RGD 
Tjp2Rathypertension  IEP 1600163protein:decreased expression:brainRGD 
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Original Reference(s)
Tjp2Ratautosomal dominant nonsyndromic deafness 51  ISOTJP2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:20602916 more ...
Tjp2Ratbranchiootorenal syndrome  ISOTJP2 (Homo sapiens)8554872ClinVar Annotator: match by term: Melnick-Fraser syndromeClinVarPMID:25741868 and PMID:30311386
Tjp2RatFamilial Hypercholanemia 1  ISOTJP2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12704386 more ...
Tjp2RatFamilial Primary Biliary Cirrhosis  ISOTJP2 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial primary biliary cirrhosisClinVarPMID:25741868 more ...
Tjp2Ratgenetic disease  ISOTJP2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:10601346 more ...
Tjp2RatHearing Loss  ISOTJP2 (Homo sapiens)8554872ClinVar Annotator: match by term: Hearing impairmentClinVarPMID:25741868 more ...
Tjp2RatNonsyndromic Sensorineural Hearing Loss  ISOTJP2 (Homo sapiens)8554872ClinVar Annotator: match by term: Nonsyndromic Hearing Loss and DominantClinVarPMID:24033266 more ...
Tjp2Ratprimary biliary cholangitis  ISOTJP2 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary biliary cirrhosisClinVarPMID:25741868 more ...
Tjp2Ratprogressive familial intrahepatic cholestasis 4  ISOTJP2 (Homo sapiens)8554872ClinVar Annotator: match by term: Cholestasis more ...ClinVarPMID:16199547 more ...
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Original Reference(s)
Tjp2Ratautism spectrum disorder  ISOTJP2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:35663546
Tjp2RatFamilial Hypercholanemia  ISOTJP2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Tjp2RatHearing Loss  ISOTJP2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21782914
Tjp2Ratintrahepatic cholestasis  ISOTJP2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24614073
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Original Reference(s)
Tjp2RatFamilial Hypercholanemia 1  ISOTJP2 (Homo sapiens)7240710 OMIM 
Tjp2Ratprogressive familial intrahepatic cholestasis 4  ISOTJP2 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Tjp2Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of TJP2 mRNA]CTDPMID:31150632
Tjp2Rat(-)-epigallocatechin 3-gallate multiple interactionsISOTJP2 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of TJP2 mRNACTDPMID:22079256
Tjp2Rat1,2-dichloroethane increases expressionISOTjp2 (Mus musculus)6480464ethylene dichloride results in increased expression of TJP2 mRNACTDPMID:28189721 and PMID:28960355
Tjp2Rat1,2-dimethylhydrazine affects expressionISOTjp2 (Mus musculus)64804641 and 2-Dimethylhydrazine affects the expression of TJP2 mRNACTDPMID:22206623
Tjp2Rat1,2-dimethylhydrazine multiple interactionsISOTjp2 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of TJP2 mRNACTDPMID:22206623
Tjp2Rat1,3-dinitrobenzene increases expressionEXP 64804643-dinitrobenzene results in increased expression of TJP2 mRNACTDPMID:21983209
Tjp2Rat17beta-estradiol multiple interactionsISOTJP2 (Homo sapiens)6480464[Estradiol co-treated with Progesterone] results in increased expression of TJP2 mRNACTDPMID:20660070
Tjp2Rat17beta-estradiol increases expressionISOTjp2 (Mus musculus)6480464Estradiol results in increased expression of TJP2 mRNACTDPMID:39298647
Tjp2Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of TJP2 mRNACTDPMID:26496021
Tjp2Rat2,3',4,4',5-Pentachlorobiphenyl multiple interactionsISOTJP2 (Homo sapiens)6480464[2 more ...CTDPMID:22906770
Tjp2Rat2,3',4,4',5-Pentachlorobiphenyl decreases expressionISOTjp2 (Mus musculus)64804642 more ...CTDPMID:31388691
Tjp2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOTJP2 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of TJP2 mRNACTDPMID:17101203 and PMID:20106945
Tjp2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of TJP2 mRNACTDPMID:33387578
Tjp2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOTjp2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of TJP2 mRNACTDPMID:21570461
Tjp2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOTjp2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of TJP2 mRNACTDPMID:21354282
Tjp2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOTjp2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of TJP2 mRNACTDPMID:19465110
Tjp2Rat2,4,6-tribromophenol decreases expressionISOTJP2 (Homo sapiens)64804642 more ...CTDPMID:31675489
Tjp2Rat2,4,6-trinitrobenzenesulfonic acid increases expressionISOTjp2 (Mus musculus)6480464Trinitrobenzenesulfonic Acid results in increased expression of TJP2 mRNACTDPMID:25307695
Tjp2Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of TJP2 mRNACTDPMID:21346803
Tjp2Rat2,6-dimethoxyphenol multiple interactionsISOTJP2 (Homo sapiens)6480464[Furaldehyde co-treated with pyrogallol 1 more ...CTDPMID:38598786

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Biological Process
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Original Reference(s)
Tjp2Ratcell-cell adhesion involved_inIBAFB:FBgn0262614 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tjp2Ratcell-cell junction organization involved_inIBAFB:FBgn0262614 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tjp2Ratestablishment of endothelial intestinal barrier involved_inISOTJP2 (Homo sapiens)1624291 PMID:23885123RGDPMID:23885123
Tjp2Ratestablishment of endothelial intestinal barrier involved_inIBAPANTHER:PTN000355588 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tjp2Rathomotypic cell-cell adhesion involved_inISOTJP2 (Homo sapiens)1624291 PMID:21679692RGDPMID:21679692
Tjp2Ratintestinal absorption involved_inISOTJP2 (Homo sapiens)1624291 PMID:23885123RGDPMID:23885123
Tjp2Ratnegative regulation of osteoclast development acts_upstream_of_or_withinISOTjp2 (Mus musculus)1624291 PMID:22437732RGDPMID:22437732
Tjp2Ratnegative regulation of tumor necrosis factor-mediated signaling pathway acts_upstream_of_or_withinISOTjp2 (Mus musculus)1624291 PMID:22437732RGDPMID:22437732
Tjp2Ratpositive regulation of blood-brain barrier permeability involved_inISOTJP2 (Homo sapiens)1624291 PMID:19148554RGDPMID:19148554
Tjp2Ratpositive regulation of blood-brain barrier permeability involved_inIBAPANTHER:PTN000355588 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tjp2Ratprotein localization to cell-cell junction involved_inIBAMGI:98759 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tjp2Ratregulation of membrane permeability involved_inISOTJP2 (Homo sapiens)1624291 PMID:23885123RGDPMID:23885123
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Cellular Component
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Original Reference(s)
Tjp2Ratanchoring junction located_inIEAUniProtKB-KW:KW-09651600115GO_REF:0000043UniProtGO_REF:0000043
Tjp2Ratbicellular tight junction located_inISOTJP2 (Homo sapiens)1624291 PMID:22006950 and PMID:23885123RGDPMID:22006950 and PMID:23885123
Tjp2Ratbicellular tight junction  IDA 631940 RGD 
Tjp2Ratbicellular tight junction is_active_inIBAMGI:1351650 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tjp2Ratbicellular tight junction located_inIEAUniProtKB-KW:KW-07961600115GO_REF:0000043UniProtGO_REF:0000043
Tjp2Ratbicellular tight junction located_inIEAInterPro:IPR005417 and InterPro:IPR0054191600115GO_REF:0000002InterProGO_REF:0000002
Tjp2Ratbicellular tight junction located_inIEAUniProtKB-SubCell:SL-02651600115GO_REF:0000044UniProtGO_REF:0000044
Tjp2Ratcell junction located_inISOTjp2 (Mus musculus)1624291 PMID:12507281RGDPMID:12507281
Tjp2Ratcell surface located_inISOTJP2 (Canis lupus familiaris)1624291 PMID:12507281RGDPMID:12507281
Tjp2Ratcell-cell contact zone located_inISOTJP2 (Homo sapiens)1624291 PMID:21679692RGDPMID:21679692
Tjp2Ratcell-cell junction located_inISOTjp2 (Mus musculus)1624291 PMID:25486565 and PMID:26609154RGDPMID:25486565 and PMID:26609154
Tjp2Ratnucleus located_inISOTjp2 (Mus musculus)1624291 PMID:22437732 and PMID:25486565RGDPMID:22437732 and PMID:25486565
Tjp2Ratnucleus located_inISOTJP2 (Homo sapiens)1624291 PMID:20868367RGDPMID:20868367
Tjp2Ratnucleus located_inISOTJP2 (Canis lupus familiaris)1624291 PMID:20868367RGDPMID:20868367
Tjp2Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Tjp2Ratplasma membrane located_inISOTjp2 (Mus musculus)1624291 PMID:12060405 more ...RGDPMID:12060405 more ...
Tjp2Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Tjp2Ratplasma membrane is_active_inIBAFB:FBgn0262614 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tjp2Ratplasma membrane located_inISOTJP2 (Homo sapiens)1624291 PMID:11090614RGDPMID:11090614
Tjp2Rattight junction located_inISOTjp2 (Mus musculus)1624291 PMID:24889144 and PMID:34166821RGDPMID:24889144 and PMID:34166821
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1 to 13 of 13 rows
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Reference Title
Reference Citation
1. A systematic analysis of 40 random genes in cultured vascular smooth muscle subtypes reveals a heterogeneity of gene expression and identifies the tight junction gene zonula occludens 2 as a marker of epithelioid "pup" smooth muscle cells and a participant in carotid neointimal formation. Adams LD, etal., Arterioscler Thromb Vasc Biol 1999 Nov;19(11):2600-8.
2. Histone deacetylase inhibitors up-regulate the expression of tight junction proteins. Bordin M, etal., Mol Cancer Res. 2004 Dec;2(12):692-701.
3. Complex inheritance of familial hypercholanemia with associated mutations in TJP2 and BAAT. Carlton VE, etal., Nat Genet 2003 May;34(1):91-6.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Comparative changes in the blood-brain barrier and cerebral infarction of SHR and WKY rats. Hom S, etal., Am J Physiol Regul Integr Comp Physiol. 2007 Jan 18;.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Connexin 43 interacts with zona occludens-1 and -2 proteins in a cell cycle stage-specific manner. Singh D, etal., J Biol Chem. 2005 Aug 26;280(34):30416-21. Epub 2005 Jun 26.
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PMID:11090614   PMID:12060405   PMID:12477932   PMID:12507281   PMID:14681019   PMID:15632090   PMID:16931598   PMID:18197414   PMID:18423437   PMID:19148554   PMID:19507189   PMID:20868367  
PMID:20970449   PMID:21679692   PMID:22006950   PMID:22437732   PMID:23885123   PMID:24889144   PMID:25468996   PMID:25486565   PMID:26464396   PMID:26609154   PMID:33450132   PMID:34689705  



Tjp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81231,136,218 - 231,264,750 (-)NCBIGRCr8
mRatBN7.21221,709,745 - 221,838,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,709,745 - 221,838,295 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1230,159,462 - 230,287,384 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01237,089,516 - 237,217,442 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01229,907,552 - 230,035,465 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01241,945,816 - 242,084,044 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1241,945,841 - 242,083,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01249,224,590 - 249,358,779 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,475,386 - 227,574,457 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,639,414 - 227,668,771 (-)NCBI
Celera1218,921,753 - 219,049,897 (-)NCBICelera
Cytogenetic Map1q51NCBI
TJP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38969,121,264 - 69,255,208 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl969,121,264 - 69,274,615 (+)EnsemblGRCh38hg38GRCh38
GRCh37971,736,180 - 71,870,124 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36970,978,909 - 71,059,940 (+)NCBINCBI36Build 36hg18NCBI36
Build 34969,018,642 - 69,099,672NCBI
Celera942,332,221 - 42,460,614 (+)NCBICelera
Cytogenetic Map9q21.11NCBI
HuRef941,580,602 - 41,709,784 (+)NCBIHuRef
CHM1_1971,882,855 - 72,016,570 (+)NCBICHM1_1
T2T-CHM13v2.0981,294,639 - 81,423,094 (+)NCBIT2T-CHM13v2.0
Tjp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391924,071,860 - 24,202,492 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1924,071,869 - 24,202,394 (-)EnsemblGRCm39 Ensembl
GRCm381924,094,496 - 24,225,128 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1924,094,505 - 24,225,030 (-)EnsemblGRCm38mm10GRCm38
MGSCv371924,168,992 - 24,299,444 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361924,161,608 - 24,241,085 (-)NCBIMGSCv36mm8
Celera1924,858,437 - 24,990,672 (-)NCBICelera
Cytogenetic Map19BNCBI
cM Map1919.17NCBI
Tjp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554343,781,113 - 3,923,391 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554343,781,368 - 3,923,240 (-)NCBIChiLan1.0ChiLan1.0
TJP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21168,311,183 - 68,465,150 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1968,317,161 - 68,471,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0955,536,627 - 55,690,472 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1967,865,958 - 68,020,569 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl967,886,421 - 68,021,189 (+)Ensemblpanpan1.1panPan2
TJP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1188,126,134 - 88,251,018 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl188,126,136 - 88,230,654 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha188,593,804 - 88,698,045 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0188,673,963 - 88,797,946 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl188,673,965 - 88,778,196 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1188,329,360 - 88,433,088 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0188,035,802 - 88,139,746 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0188,799,691 - 88,904,715 (-)NCBIUU_Cfam_GSD_1.0
Tjp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947135,633,106 - 135,729,071 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365035,497,832 - 5,539,090 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365035,414,330 - 5,539,895 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TJP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,474,639 - 222,612,983 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,474,518 - 222,612,989 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21248,714,644 - 248,883,729 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TJP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11280,224,497 - 80,358,495 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1280,307,380 - 80,358,584 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603868,660,986 - 68,767,811 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tjp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247363,834,548 - 3,878,828 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247363,833,402 - 4,009,385 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Tjp2
1020 total Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 249231943 249231944 C A snv RCS/Kyo (KyushuU) View more Information
1 249259063 249259064 G A snv RCS/Kyo (KyushuU) View more Information

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:91
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000065921
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 79 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
5508828Leukc3Leukocyte quantity QTL 3eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1218108584224054420Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat

1 to 10 of 79 rows
RH132524  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,774,547 - 221,774,744 (+)MAPPERmRatBN7.2
Rnor_6.01242,010,632 - 242,010,828NCBIRnor6.0
Rnor_5.01249,289,500 - 249,289,696UniSTSRnor5.0
RGSC_v3.41227,540,566 - 227,540,762UniSTSRGSC3.4
Celera1218,986,555 - 218,986,751UniSTS
Cytogenetic Map1q51UniSTS
RH132796  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,709,826 - 221,710,014 (+)MAPPERmRatBN7.2
Rnor_6.01241,945,898 - 241,946,085NCBIRnor6.0
Rnor_5.01249,224,672 - 249,224,859UniSTSRnor5.0
RGSC_v3.41227,475,468 - 227,475,655UniSTSRGSC3.4
Celera1218,921,835 - 218,922,022UniSTS
Cytogenetic Map1q51UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000065921   ⟹   ENSRNOP00000062549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1221,709,745 - 221,838,295 (-)Ensembl
Rnor_6.0 Ensembl1241,945,841 - 242,083,484 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094702   ⟹   ENSRNOP00000095687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1221,709,745 - 221,838,295 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103927   ⟹   ENSRNOP00000096118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1221,709,745 - 221,788,493 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104406   ⟹   ENSRNOP00000093930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1221,709,745 - 221,807,388 (-)Ensembl
RefSeq Acc Id: NM_001414504   ⟹   NP_001401433
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,136,218 - 231,264,750 (-)NCBI
mRatBN7.21221,709,745 - 221,838,291 (-)NCBI
RefSeq Acc Id: NM_053773   ⟹   NP_446225
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,136,218 - 231,264,750 (-)NCBI
mRatBN7.21221,709,745 - 221,838,291 (-)NCBI
Rnor_6.01241,945,816 - 242,083,484 (-)NCBI
Rnor_5.01249,224,590 - 249,358,779 (-)NCBI
RGSC_v3.41227,475,386 - 227,574,457 (-)RGD
Celera1218,921,753 - 219,049,897 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231176   ⟹   XP_006231238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,136,218 - 231,233,664 (-)NCBI
mRatBN7.21221,709,745 - 221,807,203 (-)NCBI
Rnor_6.01241,945,816 - 242,059,862 (-)NCBI
Rnor_5.01249,224,590 - 249,358,779 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231177   ⟹   XP_006231239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,136,218 - 231,186,273 (-)NCBI
mRatBN7.21221,709,745 - 221,756,516 (-)NCBI
Rnor_6.01241,945,816 - 241,992,901 (-)NCBI
Rnor_5.01249,224,590 - 249,358,779 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231178   ⟹   XP_006231240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,136,218 - 231,214,912 (-)NCBI
mRatBN7.21221,709,745 - 221,788,426 (-)NCBI
Rnor_6.01241,945,816 - 242,026,725 (-)NCBI
Rnor_5.01249,224,590 - 249,358,779 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231182   ⟹   XP_006231244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,136,218 - 231,186,279 (-)NCBI
mRatBN7.21221,709,745 - 221,756,522 (-)NCBI
Rnor_6.01241,945,816 - 241,992,902 (-)NCBI
Rnor_5.01249,224,590 - 249,358,779 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039109067   ⟹   XP_038964995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,136,218 - 231,214,840 (-)NCBI
mRatBN7.21221,709,745 - 221,788,411 (-)NCBI
RefSeq Acc Id: XM_039109085   ⟹   XP_038965013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,136,218 - 231,214,914 (-)NCBI
mRatBN7.21221,709,745 - 221,788,426 (-)NCBI
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: NP_446225   ⟸   NM_053773
- Peptide Label: isoform 2
- UniProtKB: Q3ZB99 (UniProtKB/TrEMBL),   E9PTS1 (UniProtKB/TrEMBL),   A0A8I6ALD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231238   ⟸   XM_006231176
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AP88 (UniProtKB/TrEMBL),   A0A8I6ALD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231240   ⟸   XM_006231178
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GLX8 (UniProtKB/TrEMBL),   A6I0Q0 (UniProtKB/TrEMBL),   A0A8I6ALD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231244   ⟸   XM_006231182
- Peptide Label: isoform X4
- UniProtKB: A0A8I6ALD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231239   ⟸   XM_006231177
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALD4 (UniProtKB/TrEMBL)
- Sequence:
Guanylate kinase-like   PDZ   SH3

Name Modeler Protein Id AA Range Protein Structure
AF-Q3ZB99-F1-model_v2 AlphaFold Q3ZB99 1-1164 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13690824
Promoter ID:EPDNEW_R1348
Type:initiation region
Name:Tjp2_1
Description:tight junction protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01242,083,480 - 242,083,540EPDNEW


1 to 40 of 53 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-56096 BioCyc
Ensembl Genes ENSRNOG00000015030 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065921 ENTREZGENE
  ENSRNOT00000065921.4 UniProtKB/TrEMBL
  ENSRNOT00000094702 ENTREZGENE
  ENSRNOT00000094702.1 UniProtKB/TrEMBL
  ENSRNOT00000103927 ENTREZGENE
  ENSRNOT00000103927.1 UniProtKB/TrEMBL
  ENSRNOT00000104406.1 UniProtKB/TrEMBL
  ENSRNOT00000148916 ENTREZGENE
  ENSRNOT00000167191 ENTREZGENE
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7936785 IMAGE-MGC_LOAD
InterPro Guanylate_kin UniProtKB/TrEMBL
  Guanylate_kin/L-typ_Ca_channel UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PDZ/DHR/GLGF UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  ZO-2_SH3 UniProtKB/TrEMBL
  ZonOcculdens UniProtKB/TrEMBL
  ZonOcculS2 UniProtKB/TrEMBL
MGC_CLONE MGC:124724 IMAGE-MGC_LOAD
NCBI Gene 115769 ENTREZGENE
PANTHER TIGHT JUNCTION PROTEIN UniProtKB/TrEMBL
  TIGHT JUNCTION PROTEIN ZO-2 UniProtKB/TrEMBL
Pfam Guanylate_kin UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
PhenoGen Tjp2 PhenoGen
PRINTS ZONOCCLUDNS UniProtKB/TrEMBL
  ZONOCCLUDNS2 UniProtKB/TrEMBL
PROSITE GUANYLATE_KINASE_2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015030 RatGTEx
SMART GuKc UniProtKB/TrEMBL
1 to 40 of 53 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Tjp2  tight junction protein 2  LOC108349129  uncharacterized LOC108349129  Data merged from RGD:11448097 737654 PROVISIONAL
2016-08-02 LOC108349129  uncharacterized LOC108349129      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-02-26 Tjp2  tight junction protein 2      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Tjp2        Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_regulation differentially expressed following carotoid injury 631940