TJP2 (tight junction protein 2) - Rat Genome Database

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Gene: TJP2 (tight junction protein 2) Chlorocebus sabaeus
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Symbol: TJP2
Name: tight junction protein 2
RGD ID: 18370348
Description: ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN negative regulation of osteoclast development (ortholog); negative regulation of tumor necrosis factor-mediated signaling pathway (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant nonsyndromic deafness 51 (ortholog); branchiootorenal syndrome (ortholog); FOUND IN bicellular tight junction (ortholog); cell junction (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tight junction protein ZO-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11280,224,497 - 80,358,495 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1280,307,380 - 80,358,584 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603868,660,986 - 68,767,811 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TJP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11280,224,497 - 80,358,495 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1280,307,380 - 80,358,584 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603868,660,986 - 68,767,811 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TJP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38969,121,264 - 69,255,208 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl969,121,264 - 69,274,615 (+)EnsemblGRCh38hg38GRCh38
GRCh37971,736,180 - 71,870,124 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36970,978,909 - 71,059,940 (+)NCBINCBI36Build 36hg18NCBI36
Build 34969,018,642 - 69,099,672NCBI
Celera942,332,221 - 42,460,614 (+)NCBICelera
Cytogenetic Map9q21.11NCBI
HuRef941,580,602 - 41,709,784 (+)NCBIHuRef
CHM1_1971,882,855 - 72,016,570 (+)NCBICHM1_1
T2T-CHM13v2.0981,294,639 - 81,423,094 (+)NCBIT2T-CHM13v2.0
Tjp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391924,071,860 - 24,202,492 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1924,071,869 - 24,202,394 (-)EnsemblGRCm39 Ensembl
GRCm381924,094,496 - 24,225,128 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1924,094,505 - 24,225,030 (-)EnsemblGRCm38mm10GRCm38
MGSCv371924,168,992 - 24,299,444 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361924,161,608 - 24,241,085 (-)NCBIMGSCv36mm8
Celera1924,858,437 - 24,990,672 (-)NCBICelera
Cytogenetic Map19BNCBI
cM Map1919.17NCBI
Tjp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81231,136,218 - 231,264,750 (-)NCBIGRCr8
mRatBN7.21221,709,745 - 221,838,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,709,745 - 221,838,295 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1230,159,462 - 230,287,384 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01237,089,516 - 237,217,442 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01229,907,552 - 230,035,465 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01241,945,816 - 242,084,044 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1241,945,841 - 242,083,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01249,224,590 - 249,358,779 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,475,386 - 227,574,457 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,639,414 - 227,668,771 (-)NCBI
Celera1218,921,753 - 219,049,897 (-)NCBICelera
Cytogenetic Map1q51NCBI
Tjp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554343,781,113 - 3,923,391 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554343,781,368 - 3,923,240 (-)NCBIChiLan1.0ChiLan1.0
TJP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21168,311,183 - 68,465,150 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1968,317,161 - 68,471,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0955,536,627 - 55,690,472 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1967,865,958 - 68,020,569 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl967,886,421 - 68,021,189 (+)Ensemblpanpan1.1panPan2
TJP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1188,126,134 - 88,251,018 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl188,126,136 - 88,230,654 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha188,593,804 - 88,698,045 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0188,673,963 - 88,797,946 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl188,673,965 - 88,778,196 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1188,329,360 - 88,433,088 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0188,035,802 - 88,139,746 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0188,799,691 - 88,904,715 (-)NCBIUU_Cfam_GSD_1.0
Tjp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947135,633,106 - 135,729,071 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365035,497,832 - 5,539,090 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365035,414,330 - 5,539,895 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TJP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,474,639 - 222,612,983 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,474,518 - 222,612,989 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21248,714,644 - 248,883,729 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tjp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247363,834,548 - 3,878,828 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247363,833,402 - 4,009,385 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000006505   ⟹   ENSCSAP00000004708
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1280,307,380 - 80,358,584 (+)Ensembl
RefSeq Acc Id: XM_007969432   ⟹   XP_007967623
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11280,307,172 - 80,358,495 (+)NCBI
Vero_WHO_p1.0NW_02366603868,714,991 - 68,767,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969433   ⟹   XP_007967624
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11280,276,535 - 80,358,495 (+)NCBI
Vero_WHO_p1.0NW_02366603868,684,925 - 68,767,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969434   ⟹   XP_007967625
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11280,224,501 - 80,358,495 (+)NCBI
Vero_WHO_p1.0NW_02366603868,660,989 - 68,767,804 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969435   ⟹   XP_007967626
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11280,307,171 - 80,358,495 (+)NCBI
Vero_WHO_p1.0NW_02366603868,714,991 - 68,767,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969436   ⟹   XP_007967627
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11280,307,168 - 80,358,495 (+)NCBI
Vero_WHO_p1.0NW_02366603868,714,991 - 68,767,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969437   ⟹   XP_007967628
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11280,276,535 - 80,358,495 (+)NCBI
Vero_WHO_p1.0NW_02366603868,684,925 - 68,767,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969438   ⟹   XP_007967629
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11280,224,497 - 80,358,495 (+)NCBI
Vero_WHO_p1.0NW_02366603868,660,986 - 68,767,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037998472   ⟹   XP_037854400
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603868,684,925 - 68,767,804 (+)NCBI
RefSeq Acc Id: XP_007967629   ⟸   XM_007969438
- Peptide Label: isoform X8
- UniProtKB: A0A0D9R7W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967625   ⟸   XM_007969434
- Peptide Label: isoform X5
- UniProtKB: A0A0D9R7W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967624   ⟸   XM_007969433
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R7W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967628   ⟸   XM_007969437
- Peptide Label: isoform X7
- UniProtKB: A0A0D9R7W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967627   ⟸   XM_007969436
- Peptide Label: isoform X6
- UniProtKB: A0A0D9R7W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967626   ⟸   XM_007969435
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R7W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967623   ⟸   XM_007969432
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R7W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037854400   ⟸   XM_037998472
- Peptide Label: isoform X4
- UniProtKB: A0A0D9R7W9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000004708   ⟸   ENSCSAT00000006505


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008451 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006505.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro GK/Ca_channel_bsu UniProtKB/TrEMBL
  Guanylate_kin-like_dom UniProtKB/TrEMBL
  IPR005417 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  ZO-2 UniProtKB/TrEMBL
  ZO-2_SH3 UniProtKB/TrEMBL
KEGG Report csab:103219551 UniProtKB/TrEMBL
NCBI Gene TJP2 ENTREZGENE
PANTHER TIGHT JUNCTION PROTEIN UniProtKB/TrEMBL
  TIGHT JUNCTION PROTEIN ZO-2 UniProtKB/TrEMBL
Pfam Guanylate_kin UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
PRINTS ZONOCCLUDNS UniProtKB/TrEMBL
  ZONOCCLUDNS2 UniProtKB/TrEMBL
PROSITE GUANYLATE_KINASE_2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART GuKc UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9R7W9 ENTREZGENE, UniProtKB/TrEMBL