Agxt (alanine--glyoxylate aminotransferase) - Rat Genome Database

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Gene: Agxt (alanine--glyoxylate aminotransferase) Rattus norvegicus
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Symbol: Agxt
Name: alanine--glyoxylate aminotransferase
RGD ID: 2073
Description: Enables L-serine-pyruvate transaminase activity; alanine-glyoxylate transaminase activity; and amino acid binding activity. Involved in carboxylic acid biosynthetic process; response to cAMP; and response to glucocorticoid. Located in mitochondrial matrix and peroxisome. Human ortholog(s) of this gene implicated in primary hyperoxaluria type 1. Orthologous to human AGXT (alanine--glyoxylate aminotransferase); PARTICIPATES IN alanine metabolic pathway; dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AGT; alanine--glyoxylate and serine--pyruvate aminotransferase; alanine-glyoxylate aminotransferase; alanine-glyoxylate aminotransferase (serine-pyruvate aminotransferase); angiotensin receptor 2; serine--pyruvate aminotransferase; serine--pyruvate aminotransferase, mitochondrial; serine--pyruvate aminotransferase, peroxisomal; serine-pyruvate aminotransferase; serine:pyruvate aminotransferase SPT; serine:pyruvate aminotransferase, SPT,; serine:pyruvate/alanine:glyoxylate aminotransferase; Spat; SPT
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Agxt_v1   Agxt_v2  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,122,793 - 101,132,746 (+)NCBIGRCr8
mRatBN7.2993,675,384 - 93,685,337 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,675,384 - 93,685,336 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9102,110,940 - 102,120,893 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,246,884 - 107,256,803 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,603,034 - 105,612,953 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,281,339 - 100,291,292 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,281,339 - 100,291,291 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0999,939,444 - 99,949,397 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,412,128 - 92,422,075 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1992,616,896 - 92,626,844 (+)NCBI
Celera991,210,785 - 91,220,737 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
AgxtRatHyperoxaluria  ISOAGXT (Homo sapiens)1302510DNA:mutations:cds:RGD 
AgxtRatHyperoxaluria  ISOAGXT (Homo sapiens)1300367DNA:mutations:cds:RGD 
AgxtRatVitamin B Deficiency  IEP 1599455 RGD 
1 to 13 of 13 rows
Object Symbol
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Original Reference(s)
AgxtRatBethlem Myopathy 1A  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: Bethlem myopathy 1AClinVarPMID:26004199 and PMID:28492532
AgxtRatCardiac Arrhythmias  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: Cardiac arrhythmiaClinVarPMID:19479957 more ...
AgxtRatchromosome 2q37 deletion syndrome  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 2q37 deletion syndromeClinVarPMID:25741868
AgxtRatD-2-hydroxyglutaric aciduria 1  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: D-2-hydroxyglutaric aciduria 1ClinVarPMID:16081310 more ...
AgxtRatgenetic disease  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:19479957 more ...
AgxtRathereditary spastic paraplegia 30  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegia 30ClinVarPMID:16081310 more ...
AgxtRatHyperoxaluria  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: HyperoxaluriaClinVarPMID:10453743 more ...
AgxtRatintellectual disability  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
AgxtRatnephrocalcinosis  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: NephrocalcinosisClinVarPMID:10541294 more ...
AgxtRatnephrolithiasis  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: NephrolithiasisClinVarPMID:10541294 more ...
AgxtRatnephrotic syndrome  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: Nephrotic syndromeClinVarPMID:10453743 more ...
AgxtRatprimary hyperoxaluria  ISOAGXT (Homo sapiens)8554872ClinVar Annotator: match by term: Primary hyperoxaluriaClinVarPMID:10400689 more ...
AgxtRatprimary hyperoxaluria type 1  ISOAGXT (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10394939 more ...
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Original Reference(s)
AgxtRatprimary hyperoxaluria type 1  ISOAGXT (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
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Original Reference(s)
AgxtRatprimary hyperoxaluria type 1  ISSAgxt (Mus musculus)13592920OMIM:259900MouseDO 
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Original Reference(s)
AgxtRatThrombocytopenia 7  ISOAGXT (Canis lupus familiaris)9068941Hyperoxaluria more ...OMIAPMID:1672096 more ...
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Original Reference(s)
AgxtRatprimary hyperoxaluria type 1  ISOAGXT (Homo sapiens)7240710 OMIM 

1 to 20 of 112 rows

  
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Original Reference(s)
AgxtRat(1->4)-beta-D-glucan multiple interactionsISOAgxt (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of AGXT mRNACTDPMID:36331819
AgxtRat1,2-dimethylhydrazine decreases expressionISOAgxt (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of AGXT mRNACTDPMID:22206623
AgxtRat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of AGXT mRNACTDPMID:30723492
AgxtRat17beta-estradiol decreases expressionISOAGXT (Homo sapiens)6480464Estradiol results in decreased expression of AGXT mRNACTDPMID:20106945
AgxtRat17beta-estradiol increases expressionISOAgxt (Mus musculus)6480464Estradiol results in increased expression of AGXT mRNACTDPMID:39298647
AgxtRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of AGXT proteinCTDPMID:32145629
AgxtRat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOAgxt (Mus musculus)64804642 more ...CTDPMID:30294300
AgxtRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOAgxt (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of AGXT mRNACTDPMID:19770486
AgxtRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOAgxt (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of AGXT mRNACTDPMID:27562557
AgxtRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of AGXT mRNACTDPMID:16054898 more ...
AgxtRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOAGXT (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of AGXT mRNACTDPMID:20106945 and PMID:21632981
AgxtRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOAgxt (Mus musculus)64804642 more ...CTDPMID:38648751
AgxtRat3,7-dihydropurine-6-thione increases expressionEXP 6480464Mercaptopurine results in increased expression of AGXT mRNACTDPMID:23358152
AgxtRat3H-1,2-dithiole-3-thione increases expressionEXP 64804641 and 2-dithiol-3-thione results in increased expression of AGXT mRNACTDPMID:19162173
AgxtRat4,4'-sulfonyldiphenol decreases expressionISOAgxt (Mus musculus)6480464bisphenol S results in decreased expression of AGXT mRNACTDPMID:39298647
AgxtRat4-hydroxyphenyl retinamide increases expressionISOAGXT (Homo sapiens)6480464Fenretinide results in increased expression of AGXT mRNACTDPMID:16671099
AgxtRat7,12-dimethyltetraphene decreases expressionISOAgxt (Mus musculus)64804649 more ...CTDPMID:38307155
AgxtRatacetamide decreases expressionEXP 6480464acetamide results in decreased expression of AGXT mRNACTDPMID:31881176
AgxtRataflatoxin B1 affects expressionISOAGXT (Homo sapiens)6480464Aflatoxin B1 affects the expression of AGXT proteinCTDPMID:20106945
AgxtRataflatoxin B1 decreases methylationISOAGXT (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of AGXT exonCTDPMID:30157460

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Biological Process
1 to 18 of 18 rows

  
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Original Reference(s)
AgxtRatglycine biosynthetic process, by transamination of glyoxylate  IDA 1599457 RGD 
AgxtRatglycine biosynthetic process, by transamination of glyoxylate involved_inIBAPANTHER:PTN000475663 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AgxtRatglycine biosynthetic process, by transamination of glyoxylate involved_inISOAGXT (Homo sapiens)1624291 PMID:22198249RGDPMID:22198249
AgxtRatglyoxylate catabolic process involved_inISOAGXT (Homo sapiens)1624291 PMID:22198249RGDPMID:22198249
AgxtRatglyoxylate metabolic process involved_inISSUniProtKB:P215491600115GO_REF:0000024UniProtGO_REF:0000024
AgxtRatglyoxylate metabolic process acts_upstream_of_or_withinISOAgxt (Mus musculus)1624291MGI:3526219 PMID:17110443RGDPMID:17110443
AgxtRatglyoxylate metabolic process acts_upstream_of_or_withinIEAUniProtKB:O35423 and ensembl:ENSMUSP000000274911600115GO_REF:0000107EnsemblGO_REF:0000107
AgxtRatglyoxylate metabolic process involved_inISOAGXT (Homo sapiens)1624291 PMID:12777626 and PMID:3709805RGDPMID:12777626 and PMID:3709805
AgxtRatL-alanine catabolic process involved_inISOAGXT (Homo sapiens)1624291 PMID:17696873 more ...RGDPMID:17696873 more ...
AgxtRatL-cysteine catabolic process involved_inISOAGXT (Homo sapiens)1624291 PMID:18492492RGDPMID:18492492
AgxtRatL-serine metabolic process involved_inISOAGXT (Homo sapiens)1624291 PMID:10347152RGDPMID:10347152
AgxtRatNotch signaling pathway acts_upstream_of_or_withinIEAUniProtKB:O35423 and ensembl:ENSMUSP000000274911600115GO_REF:0000107EnsemblGO_REF:0000107
AgxtRatNotch signaling pathway acts_upstream_of_or_withinISOAgxt (Mus musculus)1624291 PMID:25446530RGDPMID:25446530
AgxtRatoxalic acid secretion acts_upstream_of_or_withinISOAgxt (Mus musculus)1624291MGI:3526219 PMID:17110443RGDPMID:17110443
AgxtRatoxalic acid secretion acts_upstream_of_or_withinIEAUniProtKB:O35423 and ensembl:ENSMUSP000000274911600115GO_REF:0000107EnsemblGO_REF:0000107
AgxtRatpyruvate biosynthetic process  IDA 1599457 RGD 
AgxtRatresponse to cAMP  IDA 1598892 RGD 
AgxtRatresponse to glucocorticoid  IDA 1598893 RGD 
1 to 18 of 18 rows

Cellular Component
1 to 14 of 14 rows

  
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Original Reference(s)
AgxtRatintracellular membrane-bounded organelle located_inISOAGXT (Homo sapiens)1624291 RGDGO_REF:0000052
AgxtRatmitochondrial matrix located_inIDA 1580664PMID:14561759HGNC-UCL 
AgxtRatmitochondrial matrix located_inIEAUniProtKB-SubCell:SL-01701600115GO_REF:0000044UniProtGO_REF:0000044
AgxtRatmitochondrion located_inTAS 8553402PMID:7813517HGNC-UCL 
AgxtRatmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
AgxtRatperoxisomal matrix located_inISOAGXT (Homo sapiens)1624291 PMID:22198249 and PMID:3418107RGDPMID:22198249 and PMID:3418107
AgxtRatperoxisome  IDA 1598890 RGD 
AgxtRatperoxisome located_inIEAUniProtKB-SubCell:SL-02041600115GO_REF:0000044UniProtGO_REF:0000044
AgxtRatperoxisome located_inIEAUniProtKB-KW:KW-05761600115GO_REF:0000043UniProtGO_REF:0000043
AgxtRatperoxisome is_active_inIBAPANTHER:PTN000475663 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AgxtRatperoxisome located_inISOAGXT (Homo sapiens)1624291 PMID:10960483 more ...RGDPMID:10960483 more ...
AgxtRatperoxisome located_inTAS 8553402PMID:7813517HGNC-UCL 
AgxtRatperoxisome located_inIDA 1580664PMID:14561759HGNC-UCL 
AgxtRatperoxisome  IDA 1599461 RGD 
1 to 14 of 14 rows

Molecular Function
1 to 20 of 22 rows

  
Object Symbol
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Original Reference(s)
AgxtRatalanine-glyoxylate transaminase activity  IDA 1599457 RGD 
AgxtRatalanine-glyoxylate transaminase activity enablesIEAUniProtKB:O35423 and ensembl:ENSMUSP000000274911600115GO_REF:0000107EnsemblGO_REF:0000107
AgxtRatalanine-glyoxylate transaminase activity enablesIBAFB:FBgn0014031 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AgxtRatalanine-glyoxylate transaminase activity enablesIEAEC:2.6.1.441600115GO_REF:0000003UniProtGO_REF:0000003
AgxtRatalanine-glyoxylate transaminase activity enablesISOAGXT (Homo sapiens)1624291 PMID:10960483 more ...RGDPMID:10960483 more ...
AgxtRatalanine-glyoxylate transaminase activity enablesISOAgxt (Mus musculus)1624291 PMID:17110443RGDPMID:17110443
AgxtRatalanine-glyoxylate transaminase activity enablesIEARHEA:242481600115GO_REF:0000116RHEAGO_REF:0000116
AgxtRatamino acid binding  IDA 1599457 RGD 
AgxtRatamino acid binding enablesISOAGXT (Homo sapiens)1624291 PMID:18492492RGDPMID:18492492
AgxtRatidentical protein binding enablesISOAGXT (Homo sapiens)1624291UniProtKB:P21549 more ...RGDPMID:12899834 more ...
AgxtRatL-serine-pyruvate transaminase activity  IDA 1598894 RGD 
AgxtRatL-serine-pyruvate transaminase activity enablesIEARHEA:228521600115GO_REF:0000116RHEAGO_REF:0000116
AgxtRatL-serine-pyruvate transaminase activity enablesIEAEC:2.6.1.511600115GO_REF:0000003UniProtGO_REF:0000003
AgxtRatL-serine-pyruvate transaminase activity enablesIBAPANTHER:PTN000475663 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AgxtRatL-serine-pyruvate transaminase activity enablesISOAGXT (Homo sapiens)1624291 PMID:10347152RGDPMID:10347152
AgxtRatprotein binding enablesISOAGXT (Homo sapiens)1624291UniProtKB:A1KXE4-2 more ...RGDPMID:15911627 more ...
AgxtRatprotein homodimerization activity enablesISSUniProtKB:P215491600115GO_REF:0000024UniProtGO_REF:0000024
AgxtRatprotein homodimerization activity enablesISOAGXT (Homo sapiens)1624291 PMID:10960483 more ...RGDPMID:10960483 more ...
AgxtRatpyridoxal phosphate binding enablesISOAGXT (Homo sapiens)1624291 PMID:15802217 more ...RGDPMID:15802217 more ...
AgxtRattransaminase activity enablesISOAGXT (Homo sapiens)1624291 PMID:18492492 and PMID:20133649RGDPMID:18492492 and PMID:20133649
1 to 20 of 22 rows

Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
AgxtRatalanine, aspartate and glutamate metabolic pathway  IEArno:002526907045 KEGGrno:00250
AgxtRatglycine, serine and threonine metabolic pathway  IEA 6907045 KEGGrno:00260

1 to 20 of 25 rows
#
Reference Title
Reference Citation
1. Enzymological and mutational analysis of a complex primary hyperoxaluria type 1 phenotype involving alanine:glyoxylate aminotransferase peroxisome-to-mitochondrion mistargeting and intraperoxisomal aggregation. Danpure CJ, etal., Am J Hum Genet 1993 Aug;53(2):417-32.
2. Evolution of alanine:glyoxylate aminotransferase 1 peroxisomal and mitochondrial targeting. A survey of its subcellular distribution in the livers of various representatives of the classes Mammalia, Aves and Amphibia. Danpure CJ, etal., Eur J Cell Biol. 1994 Aug;64(2):295-313.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Inhibitory effect of cortisone acetate on the stimulation of rat liver cytosol L-serrine. Pyruvate aminotransferase by dibutyryl adenosine 3,5-monophosphate. Hoshino J, etal., Biochim Biophys Acta. 1975 Jul 14;399(1):42-9.
6. Regulation and characterization of L-serine: pyruvate aminotransferase in rat liver cytosol and mitochondria. Hoshino J, etal., Z Naturforsch C. 1977 Mar-Apr;32(3-4):249-53.
7. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
8. Proteomic analysis of rat liver peroxisome: presence of peroxisome-specific isozyme of Lon protease. Kikuchi M, etal., J Biol Chem. 2004 Jan 2;279(1):421-8. Epub 2003 Oct 15.
9. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
10. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
11. Capillary electrophoresis assay of alanine:glyoxylate aminotransferase activity in rat liver. Nishijima S, etal., J Chromatogr B Analyt Technol Biomed Life Sci. 2002 Nov 15;780(1):13-9.
12. Hepatic alanine-glyoxylate aminotransferase activity and oxalate metabolism in vitamin B6 deficient rats. Nishijima S, etal., J Urol. 2003 Feb;169(2):683-6.
13. Primary hyperoxaluria type I due to a point mutation of T to C in the coding region of the serine:pyruvate aminotransferase gene. Nishiyama K, etal., Biochem Biophys Res Commun 1991 May 15;176(3):1093-9.
14. Nucleotide sequence of the cDNA encoding the precursor for mitochondrial serine:pyruvate aminotransferase of rat liver. Oda T, etal., Eur J Biochem 1987 Nov 2;168(3):537-42.
15. Cloning and expression in Escherichia coli of cDNA for serine: pyruvate aminotransferase of rat liver. Oda T, etal., Eur J Biochem. 1985 Aug 1;150(3):415-21.
16. Mitochondrial targeting signal-induced conformational change and repression of the peroxisomal targeting signal of the precursor for rat liver serine:pyruvate/alanine:glyoxylate aminotransferase. Oda T, etal., J Biochem (Tokyo). 2000 Apr;127(4):665-71.
17. Generation from a single gene of two mRNAs that encode the mitochondrial and peroxisomal serine:pyruvate aminotransferase of rat liver. Oda T, etal., J Biol Chem 1990 May 5;265(13):7513-9.
18. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
19. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
20. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
1 to 20 of 25 rows
PMID:1703535   PMID:2691502   PMID:3418107   PMID:3709805   PMID:8406472   PMID:8889548   PMID:9053548   PMID:12477932   PMID:12899834   PMID:15802217   PMID:16971151   PMID:17110443  
PMID:17696873   PMID:18492492   PMID:20133649   PMID:20178365   PMID:22198249   PMID:22529745   PMID:25446530  



Agxt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,122,793 - 101,132,746 (+)NCBIGRCr8
mRatBN7.2993,675,384 - 93,685,337 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,675,384 - 93,685,336 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9102,110,940 - 102,120,893 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,246,884 - 107,256,803 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,603,034 - 105,612,953 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,281,339 - 100,291,292 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,281,339 - 100,291,291 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0999,939,444 - 99,949,397 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,412,128 - 92,422,075 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1992,616,896 - 92,626,844 (+)NCBI
Celera991,210,785 - 91,220,737 (+)NCBICelera
Cytogenetic Map9q36NCBI
AGXT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,868,824 - 240,880,500 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,868,824 - 240,880,502 (+)EnsemblGRCh38hg38GRCh38
GRCh372241,808,241 - 241,819,917 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,456,835 - 241,467,210 (+)NCBINCBI36Build 36hg18NCBI36
Build 342241,528,151 - 241,538,527NCBI
Celera2235,480,100 - 235,491,174 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2233,568,172 - 233,579,109 (+)NCBIHuRef
CHM1_12241,814,212 - 241,824,586 (+)NCBICHM1_1
T2T-CHM13v2.02241,367,223 - 241,379,660 (+)NCBIT2T-CHM13v2.0
Agxt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,062,962 - 93,073,143 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,062,962 - 93,073,143 (+)EnsemblGRCm39 Ensembl
GRCm38193,135,240 - 93,145,421 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,135,240 - 93,145,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,031,853 - 95,041,998 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,965,651 - 94,988,099 (+)NCBIMGSCv36mm8
Celera196,079,940 - 96,090,082 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.0NCBI
Agxt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542710,005 - 717,741 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955542710,506 - 720,564 (-)NCBIChiLan1.0ChiLan1.0
AGXT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213143,555,885 - 143,567,244 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B143,570,805 - 143,582,039 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B128,125,289 - 128,137,091 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B246,928,784 - 246,939,837 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B246,928,784 - 246,939,837 (+)Ensemblpanpan1.1panPan2
AGXT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12550,968,291 - 50,976,089 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2551,181,404 - 51,189,176 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02551,163,250 - 51,171,015 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2551,163,418 - 51,170,784 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12551,004,270 - 51,012,034 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02550,750,660 - 50,758,423 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02551,026,487 - 51,034,252 (+)NCBIUU_Cfam_GSD_1.0
Agxt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303192,351,908 - 192,362,526 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936745857,102 - 867,477 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936745856,915 - 867,477 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGXT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15139,720,612 - 139,730,736 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115139,720,648 - 139,730,737 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215157,616,991 - 157,627,404 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGXT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110126,933,711 - 126,943,980 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10126,933,835 - 126,944,354 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604072,444,112 - 72,454,149 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Agxt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248475,067,201 - 5,077,525 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248475,066,356 - 5,073,538 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Agxt
76 total Variants

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:131
Interacting mature miRNAs:135
Transcripts:ENSRNOT00000029127
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)992491589100929786Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat

1 to 10 of 15 rows
RH130348  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr89101,131,940 - 101,132,519 (+)Marker Load Pipeline
mRatBN7.2993,684,531 - 93,685,110 (+)MAPPERmRatBN7.2
Rnor_6.09100,290,487 - 100,291,065NCBIRnor6.0
Rnor_5.0999,948,592 - 99,949,170UniSTSRnor5.0
RGSC_v3.4992,421,275 - 92,421,853UniSTSRGSC3.4
Celera991,219,932 - 91,220,510UniSTS
Cytogenetic Map9q34-q36UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 4 5 36 81 84 59 18 59 2 119 34 25 13 30 25



Ensembl Acc Id: ENSRNOT00000029127   ⟹   ENSRNOP00000030340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl993,675,384 - 93,685,336 (+)Ensembl
Rnor_6.0 Ensembl9100,281,339 - 100,291,291 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079305   ⟹   ENSRNOP00000070626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl993,679,849 - 93,685,336 (+)Ensembl
Rnor_6.0 Ensembl9100,285,804 - 100,291,291 (+)Ensembl
RefSeq Acc Id: NM_001270659   ⟹   NP_001257588
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,127,258 - 101,132,746 (+)NCBI
mRatBN7.2993,679,849 - 93,685,337 (+)NCBI
Rnor_6.09100,285,804 - 100,291,292 (+)NCBI
Rnor_5.0999,939,444 - 99,949,397 (+)NCBI
Celera991,215,250 - 91,220,737 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001276706   ⟹   NP_001263635
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,122,793 - 101,132,746 (+)NCBI
mRatBN7.2993,675,384 - 93,685,337 (+)NCBI
Rnor_6.09100,281,339 - 100,291,292 (+)NCBI
Rnor_5.0999,939,444 - 99,949,397 (+)NCBI
Celera991,210,785 - 91,220,737 (+)NCBI
Sequence:
RefSeq Acc Id: NM_030656   ⟹   NP_085914
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,122,793 - 101,132,746 (+)NCBI
mRatBN7.2993,675,384 - 93,685,337 (+)NCBI
Rnor_6.09100,281,339 - 100,291,292 (+)NCBI
Rnor_5.0999,939,444 - 99,949,397 (+)NCBI
RGSC_v3.4992,412,128 - 92,422,075 (+)RGD
Celera991,210,785 - 91,220,737 (+)NCBI
Sequence:
RefSeq Acc Id: NP_085914   ⟸   NM_030656
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9R2C7 (UniProtKB/Swiss-Prot),   P09139 (UniProtKB/Swiss-Prot),   Q5I0N5 (UniProtKB/TrEMBL),   A6JQX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263635   ⟸   NM_001276706
- Peptide Label: isoform 3
- UniProtKB: Q5I0N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257588   ⟸   NM_001270659
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JYE8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070626   ⟸   ENSRNOT00000079305
Ensembl Acc Id: ENSRNOP00000030340   ⟸   ENSRNOT00000029127
Aminotransferase class V

Name Modeler Protein Id AA Range Protein Structure
AF-P09139-F1-model_v2 AlphaFold P09139 1-414 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 35 of 35 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-26657 BioCyc
BioCyc Pathway GLYSYN-ALA-PWY [glycine biosynthesis III] BioCyc
BioCyc Pathway Image GLYSYN-ALA-PWY BioCyc
Ensembl Genes ENSRNOG00000023856 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000029127 ENTREZGENE
  ENSRNOT00000029127.4 UniProtKB/Swiss-Prot
  ENSRNOT00000079305 ENTREZGENE
Gene3D-CATH 3.40.640.10 UniProtKB/Swiss-Prot
  3.90.1150.10 UniProtKB/Swiss-Prot
InterPro Aminotrans_V_dom UniProtKB/Swiss-Prot
  Aminotrans_V_PyrdxlP_BS UniProtKB/Swiss-Prot
  PyrdxlP-dep_Trfase UniProtKB/Swiss-Prot
  PyrdxlP-dep_Trfase_dom1 UniProtKB/Swiss-Prot
  PyrdxlP-dep_Trfase_major UniProtKB/Swiss-Prot
  SP_NH2Trfase/AEP_transaminase UniProtKB/Swiss-Prot
KEGG Report rno:24792 UniProtKB/Swiss-Prot
NCBI Gene 24792 ENTREZGENE
PANTHER ALANINE--GLYOXYLATE AMINOTRANSFERASE UniProtKB/Swiss-Prot
  AMINOTRANSFERASE CLASS V UniProtKB/Swiss-Prot
Pfam Aminotran_5 UniProtKB/Swiss-Prot
PhenoGen Agxt PhenoGen
PIRSF SPT UniProtKB/Swiss-Prot
PROSITE AA_TRANSFER_CLASS_5 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000023856 RatGTEx
Superfamily-SCOP SSF53383 UniProtKB/Swiss-Prot
UniProt A0A0G2JYE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8A1U8X5_RAT UniProtKB/TrEMBL
  A6JQX5 ENTREZGENE, UniProtKB/TrEMBL
  A6JQX6_RAT UniProtKB/TrEMBL
  A6JQX7_RAT UniProtKB/TrEMBL
  P09139 ENTREZGENE
  Q5I0N5 ENTREZGENE, UniProtKB/TrEMBL
  Q9R2C7 ENTREZGENE
  SPYA_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q9R2C7 UniProtKB/Swiss-Prot
1 to 35 of 35 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-01 Agxt  alanine--glyoxylate aminotransferase  Agxt  alanine--glyoxylate and serine--pyruvate aminotransferase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-03-22 Agxt  alanine--glyoxylate and serine--pyruvate aminotransferase  Agxt  alanine-glyoxylate aminotransferase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2003-04-09 Agxt  alanine-glyoxylate aminotransferase      Symbol and Name updated 629477 APPROVED
2003-03-07 Agxt  alanine-glyoxylate aminotransferase  Spat  Serine-pyruvate aminotransferase  Data merged from RGD:3743 628472 PROVISIONAL
2002-11-06 Agxt  angiotensin receptor 2    Alanine-glyoxylate aminotransferase (Serine-pyruvate aminotransferase)  Name updated 625702 APPROVED
2002-06-10 Agxt  Alanine-glyoxylate aminotransferase (Serine-pyruvate aminotransferase)      Symbol and Name status set to approved 70586 APPROVED
2002-06-10 Spat  Serine-pyruvate aminotransferase      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_cellular_localization products of alternative initiation sites are localized to mitochondria and peroxisomes 632169
gene_expression expressed in liver 632168
gene_transcript variant transcripts are transcribed from different initiation sites in exon 1 and differ at the 5-terminal sequence 632169
gene_transcript variant transcript encoding polypeptide targeted to the mitochondria has 70 additional nucleotides which encode the N-terminal mitochondrial targeting sequence 632169