Tyr (tyrosinase) - Rat Genome Database

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Gene: Tyr (tyrosinase) Rattus norvegicus
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Symbol: Tyr
Name: tyrosinase
RGD ID: 1589755
Description: Predicted to enable copper ion binding activity; protein homodimerization activity; and tyrosinase activity. Involved in several processes, including response to UV; response to cAMP; and response to vitamin D. Predicted to be located in melanosome and perinuclear region of cytoplasm. Used to study oculocutaneous albinism. Human ortholog(s) of this gene implicated in several diseases, including melanoma (multiple); ocular albinism 1; oculocutaneous albinism (multiple); retinoschisis; and vitiligo. Orthologous to human TYR (tyrosinase); PARTICIPATES IN alkaptonuria pathway; disulfiram pharmacodynamics pathway; dopamine beta-hydroxylase deficiency pathway; INTERACTS WITH 6-propyl-2-thiouracil; actinomycin D; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C; Tyr_mapped; tyrosinase (albino coat color) (mapped)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Tyrem1Kyo   TyrsiaKyo  
Genetic Models: KFRS2/Kyo DA-Tyrem1Kyo KFRS2/Kyo-/+
Is Marker For: Strains:   FHH.BN-(D1Hmgc14-D1Hmgc15)/Mcwi   KFRS2/Kyo   DA-Tyrem1Kyo   KFRS2/Kyo-/+   F344-TyrCKitH/Kyo   F344-AsipATyrCKitH/Kyo   F344-TyrCKitH/Hkv   F344-TyrCKitH.LEA-(Tel-D17Got10)/Hkv  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81150,527,687 - 150,622,857 (-)NCBIGRCr8
mRatBN7.21141,115,036 - 141,210,207 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1141,115,036 - 141,210,207 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1149,090,247 - 149,179,011 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01156,260,901 - 156,349,657 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01149,134,804 - 149,223,566 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01151,012,598 - 151,106,802 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1151,012,598 - 151,106,802 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01157,322,968 - 157,416,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,641,257 - 143,746,315 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1139,445,261 - 139,532,999 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
Species
Term
Qualifier
Evidence
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Reference
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Source
Original Reference(s)
TyrRatAlbinism treatmentISOTyr (Mus musculus)8694355 RGD 
TyrRatAlbinism  IMP 12792973 RGD 
TyrRatAlbinism  ISOTyr (Mus musculus)8694353DNA:missense mutation:cds:p.H420R(mouse)RGD 
TyrRatmelanoma  ISOTYR (Homo sapiens)8694387 RGD 
TyrRatmelanoma disease_progressionISOTYR (Homo sapiens)8694384 RGD 
TyrRatNeoplasm Metastasis no_associationISOTYR (Homo sapiens)8694395associated with melanomaRGD 
TyrRatocular albinism 1  ISOTYR (Homo sapiens)8694339DNA:mutations:cds:p.R402Q and p.S192Y(human)RGD 
TyrRatoculocutaneous albinism treatmentISOTyr (Mus musculus)8694345 RGD 
TyrRatoculocutaneous albinism  ISOTYR (Homo sapiens)1599686OCA1 more ...RGD 
TyrRatoculocutaneous albinism  IAGP 1599687DNA:missense mutation:exon:p.R299H (rat)RGD 
TyrRatoculocutaneous albinism  ISOTyr (Mus musculus)8694352DNA:missense mutation:cds:p.S128I(mouse)RGD 
TyrRatoculocutaneous albinism  ISOTYR (Homo sapiens)8694338DNA:mutations:multiple:RGD 
TyrRatoculocutaneous albinism type IA  ISOTYR (Homo sapiens)8694337DNA:mutations:multiple:RGD 
TyrRatoculocutaneous albinism type IA  ISOTYR (Homo sapiens)8694334DNA:missense mutation:exon: p.I151S(human)RGD 
TyrRatoculocutaneous albinism type IA  ISOTYR (Homo sapiens)8694340DNa:mutations:cds:p.R77Q more ...RGD 
TyrRatoculocutaneous albinism type IA treatmentISOTYR (Homo sapiens)8694335 RGD 
TyrRatoculocutaneous albinism type IA  ISOTyr (Mus musculus)8694335 RGD 
TyrRatpapilloma treatmentISOTyr (Mus musculus)8694346 RGD 
TyrRatPresbycusis treatmentISOTyr (Mus musculus)8694324associated with AlbinismRGD 
TyrRatPresbycusis onsetISOTyr (Mus musculus)8694327 RGD 
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Object Symbol
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Reference
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Original Reference(s)
TyrRatAlbinism  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: AlbinismClinVarPMID:10766867 more ...
TyrRatbreast cancer  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant breast neoplasmClinVarPMID:10766867 more ...
TyrRatbreast cancer  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant breast neoplasmClinVarPMID:10766867 more ...
TyrRatChoroidal Neovascularization  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Choroidal neovascularizationClinVarPMID:10766867 more ...
TyrRatcongenital nystagmus  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital nystagmusClinVarPMID:10987646 more ...
TyrRatEye Abnormalities  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Abnormality of the eyeClinVarPMID:16098056 more ...
TyrRatfamilial melanoma  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Melanoma more ...ClinVarPMID:10766867 more ...
TyrRatfamilial melanoma  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: MELANOMA AND RENAL CELL CARCINOMA and SUSCEPTIBILITY TOClinVarPMID:10766867 more ...
TyrRatFoveal Hypoplasia  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Foveal hypoplasiaClinVarPMID:10766867 more ...
TyrRatgenetic disease  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:10987646 more ...
TyrRatHearing Loss  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Hearing impairmentClinVarPMID:11284711 more ...
TyrRathereditary breast ovarian cancer syndrome  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Breast-ovarian cancer more ...ClinVarPMID:18463683 more ...
TyrRatintellectual disability  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
TyrRatKeratosis Palmoplantaris with Periodontopathia and Onychogryposis  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Haim-Munk syndromeClinVarPMID:28492532
TyrRatmyopia  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: MyopiaClinVarPMID:13680365 more ...
TyrRatNonsyndromic Oculocutaneous Albinism  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Nonsyndromic Oculocutaneous AlbinismClinVarPMID:10987646 more ...
TyrRatocular albinism 1  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Ocular albinismClinVarPMID:13680365 more ...
TyrRatocular albinism with sensorineural deafness  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Albinism more ...ClinVarPMID:11284711 more ...
TyrRatoculocutaneous albinism  ISOTYR (Homo sapiens)8554872ClinVar Annotator: match by term: Oculocutaneous albinismClinVarPMID:10094567 more ...
TyrRatOculocutaneous Albinism Type I, Temperature-Sensitive  ISOTYR (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10766867 more ...
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Original Reference(s)
TyrRatbasal cell carcinoma  ISOTYR (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18488027
TyrRatmelanoma  ISOTYR (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18488027 more ...
TyrRatoculocutaneous albinism  ISOTYR (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:2511845 and PMID:9158138
TyrRatoculocutaneous albinism type IA  ISOTYR (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11781109
TyrRatoculocutaneous albinism type IB  ISOTYR (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
TyrRatSkin Neoplasms  ISOTYR (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18488027
Object Symbol
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Original Reference(s)
TyrRatbuphthalmos  ISSTyr (Mus musculus)13592920OMIM:231300MouseDO 
TyrRatoculocutaneous albinism  ISSTyr (Mus musculus)13592920 MouseDO 

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Original Reference(s)
TyrRat(+)-artemisinic acid decreases expressionISOTYR (Homo sapiens)6480464artemisic acid results in decreased expression of TYR mRNACTDPMID:23063590
TyrRat17beta-estradiol multiple interactionsISOTyr (Mus musculus)6480464Estradiol inhibits the reaction [imidazole results in increased expression of TYR protein]CTDPMID:3127403
TyrRat1H-imidazole multiple interactionsISOTyr (Mus musculus)6480464Estradiol inhibits the reaction [imidazole results in increased expression of TYR protein] and Estriol inhibits the reaction [imidazole results in increased expression of TYR protein]CTDPMID:3127403
TyrRat1H-imidazole increases expressionISOTyr (Mus musculus)6480464imidazole results in increased expression of TYR proteinCTDPMID:3127403
TyrRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOTyr (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of TYR mRNACTDPMID:21570461
TyrRat2,3,7,8-tetrachlorodibenzodioxine increases activityISOTYR (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased activity of TYR proteinCTDPMID:20973933
TyrRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOTYR (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of TYR mRNACTDPMID:20973933
TyrRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOTYR (Homo sapiens)6480464[Tetrachlorodibenzodioxin results in increased activity of TYR protein] which results in increased abundance of Melanins more ...CTDPMID:20973933
TyrRat2-hydroxypropanoic acid affects expressionISOTYR (Homo sapiens)6480464Lactic Acid affects the expression of TYR mRNACTDPMID:30851411
TyrRat2-palmitoylglycerol increases expressionISOTYR (Homo sapiens)64804642-palmitoylglycerol results in increased expression of TYR mRNACTDPMID:37199045
TyrRat3-(3,4-dihydroxyphenyl)propanoic acid multiple interactionsISOTYR (Homo sapiens)6480464[TYR protein results in increased oxidation of 3 and 4-dihydroxyphenylpropionic acid] which results in decreased abundance of GlutathioneCTDPMID:20685355
TyrRat3-(3,4-dihydroxyphenyl)propanoic acid increases oxidationISOTYR (Homo sapiens)6480464TYR protein results in increased oxidation of 3 and 4-dihydroxyphenylpropionic acidCTDPMID:20685355
TyrRat3-isobutyl-1-methyl-7H-xanthine increases expressionISOTyr (Mus musculus)64804641-Methyl-3-isobutylxanthine results in increased expression of TYR mRNACTDPMID:21972008 and PMID:26748310
TyrRat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOTyr (Mus musculus)64804641-Methyl-3-isobutylxanthine results in increased expression of and results in increased activity of TYR protein more ...CTDPMID:21972008 more ...
TyrRat3-phenylpropionic acid increases oxidationISOTYR (Homo sapiens)6480464TYR protein results in increased oxidation of 3-phenylpropionic acidCTDPMID:20685355
TyrRat3-phenylpropionic acid multiple interactionsISOTYR (Homo sapiens)6480464[TYR protein results in increased oxidation of 3-phenylpropionic acid] which results in decreased abundance of GlutathioneCTDPMID:20685355
TyrRat4-hydroxynon-2-enal decreases expressionISOTYR (Homo sapiens)64804644-hydroxy-2-nonenal results in decreased expression of TYR mRNACTDPMID:23489423
TyrRat5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole multiple interactionsISOTYR (Homo sapiens)6480464Omeprazole affects the N-linked glycosylation of and results in increased degradation of TYR protein and Omeprazole inhibits the reaction [ATP7A protein results in increased activity of TYR protein]CTDPMID:25337692
TyrRat5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole decreases expressionISOTyr (Mus musculus)6480464Omeprazole results in decreased expression of TYR proteinCTDPMID:25337692
TyrRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of TYR mRNACTDPMID:25825206

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Biological Process
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Original Reference(s)
TyrRatcell population proliferation acts_upstream_of_or_withinISOTyr (Mus musculus)1624291MGI:1855976 PMID:9548375RGDPMID:9548375
TyrRatcell population proliferation acts_upstream_of_or_withinIEAUniProtKB:P11344 and ensembl:ENSMUSP000000047701600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatmelanin biosynthetic process involved_inISOTYR (Homo sapiens)1624291 PMID:8126111RGDPMID:8126111
TyrRatmelanin biosynthetic process involved_inIEAUniProtKB-KW:KW-04701600115GO_REF:0000043UniProtGO_REF:0000043
TyrRatmelanin biosynthetic process involved_inIEAUniProtKB:P14679 and ensembl:ENSP000002633211600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatmelanin biosynthetic process acts_upstream_of_or_withinIEAUniProtKB:P11344 and ensembl:ENSMUSP000000047701600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatmelanin biosynthetic process acts_upstream_of_or_withinISOTyr (Mus musculus)1624291MGI:1855976 more ...RGDPMID:7665913 and PMID:9548375
TyrRatmelanin biosynthetic process involved_inIBAMGI:98880 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
TyrRatpigmentation  IMP 1599687 RGD 
TyrRatpigmentation acts_upstream_of_or_withinISOTyr (Mus musculus)1624291MGI:1855976 more ...RGDPMID:13880466 more ...
TyrRatpigmentation acts_upstream_of_or_withinIEAUniProtKB:P11344 and ensembl:ENSMUSP000000047701600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatpigmentation involved_inIBAMGI:98880 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
TyrRatresponse to blue light involved_inISOTYR (Homo sapiens)1624291 PMID:28842328RGDPMID:28842328
TyrRatresponse to blue light involved_inIEAUniProtKB:P14679 and ensembl:ENSP000002633211600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatresponse to cAMP  IEP 8694330 RGD 
TyrRatresponse to UV  IEP 8694330 RGD 
TyrRatresponse to vitamin D  IEP 8694330 RGD 
TyrRatthymus development acts_upstream_of_or_withinISOTyr (Mus musculus)1624291MGI:1856308 PMID:10890980RGDPMID:10890980
TyrRatthymus development acts_upstream_of_or_withinIEAUniProtKB:P11344 and ensembl:ENSMUSP000000047701600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Object Symbol
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Original Reference(s)
TyrRatcytoplasm located_inISOTYR (Homo sapiens)1624291 PMID:11092760RGDPMID:11092760
TyrRatcytoplasm located_inIEAUniProtKB:P14679 and ensembl:ENSP000002633211600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatcytoplasmic vesicle located_inIEAARBA:ARBA000271901600115GO_REF:0000117UniProtGO_REF:0000117
TyrRatmelanosome located_inISOTyr (Mus musculus)1624291 PMID:22275436 more ...RGDPMID:22275436 more ...
TyrRatmelanosome located_inIEAUniProtKB:P11344 and ensembl:ENSMUSP000000047701600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatmelanosome membrane located_inIEAUniProtKB-SubCell:SL-01601600115GO_REF:0000044UniProtGO_REF:0000044
TyrRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
TyrRatperinuclear region of cytoplasm located_inISOTYR (Homo sapiens)1624291 PMID:11092760RGDPMID:11092760
TyrRatperinuclear region of cytoplasm located_inIEAUniProtKB:P14679 and ensembl:ENSP000002633211600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
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Original Reference(s)
TyrRatcopper ion binding enablesISOTYR (Homo sapiens)1624291 PMID:11092760RGDPMID:11092760
TyrRatcopper ion binding enablesIEAUniProtKB:P14679 and ensembl:ENSP000002633211600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatidentical protein binding enablesISOTYR (Homo sapiens)1624291 PMID:28842328RGDPMID:28842328
TyrRatidentical protein binding enablesIEAUniProtKB:P14679 and ensembl:ENSP000002633211600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatidentical protein binding enablesIEAUniProtKB:P11344 and ensembl:ENSMUSP000000047701600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatidentical protein binding enablesISOTyr (Mus musculus)1624291PR:P11344 PMID:9918801RGDPMID:9918801
TyrRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
TyrRatmonooxygenase activity enablesIEAUniProtKB-KW:KW-05031600115GO_REF:0000043UniProtGO_REF:0000043
TyrRatoxidoreductase activity enablesIEAInterPro:IPR0022271600115GO_REF:0000002InterProGO_REF:0000002
TyrRatprotein binding enablesISOTYR (Homo sapiens) and UniProtKB:P14679-21624291UniProtKB:P26641 more ...RGDPMID:32814053
TyrRatprotein binding enablesISOTyr (Mus musculus)1624291UniProtKB:P07147 more ...RGDPMID:18042623 and PMID:9918801
TyrRatprotein binding enablesISOTYR (Homo sapiens)1624291UniProtKB:O43747 more ...RGDPMID:16162817 more ...
TyrRatprotein homodimerization activity enablesIEAUniProtKB:P11344 and ensembl:ENSMUSP000000047701600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRatprotein homodimerization activity enablesISOTyr (Mus musculus)1624291 PMID:9918801RGDPMID:9918801
TyrRattyrosinase activity enablesISOTYR (Homo sapiens)1624291 PMID:11092760RGDPMID:11092760
TyrRattyrosinase activity enablesIEAUniProtKB:P14679 and ensembl:ENSP000002633211600115GO_REF:0000107EnsemblGO_REF:0000107
TyrRattyrosinase activity enablesIBAPANTHER:PTN001352375 and UniProtKB:P146791600115GO_REF:0000033GO_CentralGO_REF:0000033
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Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Original Reference(s)
TyrRatriboflavin metabolic pathway  IEA 6907045 KEGGrno:00740
TyrRattyrosine metabolic pathway  IEA 6907045 KEGGrno:00350
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Original Reference(s)
TyrRatabsent coat pigmentation  IMP 12792973DNA:deletion:cds:RGD 
TyrRatabsent coat pigmentation  IAGP 1599687DNA:missense mutation:exon:p.R299HRGD 

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Reference Title
Reference Citation
1. Tyrosinase as an autoantigen in patients with vitiligo. Baharav E, etal., Clin Exp Immunol. 1996 Jul;105(1):84-8.
2. A Tyrosinase missense mutation causes albinism in the Wistar rat. Blaszczyk WM, etal., Pigment Cell Res. 2005 Apr;18(2):144-5.
3. Pink-eyed dilution protein controls the processing of tyrosinase. Chen K, etal., Mol Biol Cell 2002 Jun;13(6):1953-64.
4. Immunity to melanin and to tyrosinase in melanoma patients, and in people with vitiligo. Dordic M, etal., BMC Complement Altern Med. 2012 Jul 26;12:109.
5. Autosomal recessive ocular albinism associated with a functionally significant tyrosinase gene polymorphism. Fukai K, etal., Nat Genet. 1995 Jan;9(1):92-5.
6. Tyrosinase-like polypeptides in the uterus and in the central nervous system of rats. Garai J, etal., Steroids. 1992 Apr;57(4):183-8.
7. AAV-mediated tyrosinase gene transfer restores melanogenesis and retinal function in a model of oculo-cutaneous albinism type I (OCA1). Gargiulo A, etal., Mol Ther. 2009 Aug;17(8):1347-54. doi: 10.1038/mt.2009.112. Epub 2009 May 12.
8. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. A transgenic mouse model with inducible Tyrosinase gene expression using the tetracycline (Tet-on) system allows regulated rescue of abnormal chiasmatic projections found in albinism. Gimenez E, etal., Pigment Cell Res. 2004 Aug;17(4):363-70.
10. Assessment of tyrosinase variants and skin cancer risk in a large cohort of French subjects. Hu HH, etal., J Dermatol Sci. 2011 Nov;64(2):127-33. doi: 10.1016/j.jdermsci.2011.07.003. Epub 2011 Aug 22.
11. Tyrosinase is the modifier of retinoschisis in mice. Johnson BA, etal., Genetics. 2010 Dec;186(4):1337-44. doi: 10.1534/genetics.110.120840. Epub 2010 Sep 27.
12. Mutation spectrum of the TYR and SLC45A2 genes in patients with oculocutaneous albinism. Ko JM, etal., Mol Med Rep. 2012 Apr;5(4):943-8. doi: 10.3892/mmr.2012.764. Epub 2012 Jan 25.
13. Peripheral blood tyrosinase messenger RNA detection and survival in malignant melanoma. Kunter U, etal., J Natl Cancer Inst. 1996 May 1;88(9):590-4.
14. Molecular basis of mouse Himalayan mutation. Kwon BS, etal., Biochem Biophys Res Commun. 1989 May 30;161(1):252-60.
15. A novel missense mutation of the TYR gene in a pedigree with oculocutaneous albinism type 1 from China. Lin YY, etal., Chin Med J (Engl). 2011 Oct;124(20):3358-61.
16. Tyrosinase gene (TYR) mutations in Chinese patients with oculocutaneous albinism type 1. Liu J, etal., Clin Experiment Ophthalmol. 2010 Jan;38(1):37-42. doi: 10.1111/j.1442-9071.2009.02220.x.
17. Efficient gene targeting by TAL effector nucleases coinjected with exonucleases in zygotes. Mashimo T, etal., Sci Rep. 2013;3:1253. doi: 10.1038/srep01253. Epub 2013 Feb 13.
18. Melanin precursors prevent premature age-related and noise-induced hearing loss in albino mice. Murillo-Cuesta S, etal., Pigment Cell Melanoma Res. 2010 Feb;23(1):72-83. doi: 10.1111/j.1755-148X.2009.00646.x. Epub 2009 Oct 19.
19. Absence of strial melanin coincides with age-associated marginal cell loss and endocochlear potential decline. Ohlemiller KK, etal., Hear Res. 2009 Mar;249(1-2):1-14. doi: 10.1016/j.heares.2008.12.005. Epub 2008 Dec 25.
20. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
1 to 20 of 34 rows
PMID:1145200   PMID:7665913   PMID:8126111   PMID:9548375   PMID:9918801   PMID:10890980   PMID:11092760   PMID:13880466   PMID:17247639   PMID:22275436   PMID:26620560  



Tyr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81150,527,687 - 150,622,857 (-)NCBIGRCr8
mRatBN7.21141,115,036 - 141,210,207 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1141,115,036 - 141,210,207 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1149,090,247 - 149,179,011 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01156,260,901 - 156,349,657 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01149,134,804 - 149,223,566 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01151,012,598 - 151,106,802 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1151,012,598 - 151,106,802 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01157,322,968 - 157,416,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,641,257 - 143,746,315 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1139,445,261 - 139,532,999 (-)NCBICelera
Cytogenetic Map1q32NCBI
TYR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381189,177,875 - 89,295,759 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1189,177,875 - 89,295,759 (+)EnsemblGRCh38hg38GRCh38
GRCh371188,911,043 - 89,028,927 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361188,550,688 - 88,668,575 (+)NCBINCBI36Build 36hg18NCBI36
Build 341188,550,687 - 88,668,474NCBI
Celera1185,603,013 - 85,720,910 (-)NCBICelera
Cytogenetic Map11q14.3NCBI
HuRef1185,151,456 - 85,265,865 (+)NCBIHuRef
CHM1_11188,794,044 - 88,911,928 (+)NCBICHM1_1
T2T-CHM13v2.01189,097,534 - 89,215,415 (+)NCBIT2T-CHM13v2.0
Tyr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39787,073,979 - 87,142,637 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl787,073,979 - 87,142,720 (-)EnsemblGRCm39 Ensembl
GRCm38787,424,771 - 87,493,512 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl787,424,771 - 87,493,512 (-)EnsemblGRCm38mm10GRCm38
MGSCv37794,575,915 - 94,641,921 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36787,303,166 - 87,369,172 (-)NCBIMGSCv36mm8
Celera784,786,868 - 84,854,808 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map749.01NCBI
Tyr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554144,244,035 - 4,314,001 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554144,244,035 - 4,314,001 (-)NCBIChiLan1.0ChiLan1.0
TYR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2990,055,036 - 90,172,775 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11191,099,017 - 91,216,729 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01184,188,557 - 84,306,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11187,769,989 - 87,888,138 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1187,769,606 - 87,888,138 (+)Ensemblpanpan1.1panPan2
TYR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12110,799,940 - 10,894,187 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2110,799,940 - 10,894,191 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2110,649,581 - 10,749,918 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02110,980,195 - 11,074,816 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2110,980,195 - 11,074,820 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12110,768,466 - 10,862,962 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02110,834,102 - 10,934,647 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02110,884,281 - 10,984,898 (-)NCBIUU_Cfam_GSD_1.0
Tyr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494774,823,234 - 74,920,675 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936736421,598 - 519,253 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936736421,623 - 519,085 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TYR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl922,517,047 - 22,604,290 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1922,517,047 - 22,604,290 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2925,164,768 - 25,214,580 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TYR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1180,330,051 - 80,444,646 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604345,283,848 - 45,401,720 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tyr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624845844,293 - 933,098 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624845844,492 - 933,098 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Tyr
550 total Variants

Predicted Target Of
Summary Value
Count of predictions:529
Count of miRNA genes:257
Interacting mature miRNAs:326
Transcripts:ENSRNOT00000021971
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 64 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat

1 to 10 of 64 rows
RH133723  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21141,116,373 - 141,116,572 (+)MAPPERmRatBN7.2
Rnor_6.01151,013,936 - 151,014,134NCBIRnor6.0
Rnor_5.01157,324,306 - 157,324,504UniSTSRnor5.0
RGSC_v3.41143,642,595 - 143,642,793UniSTSRGSC3.4
Celera1139,446,599 - 139,446,797UniSTS
RH 3.4 Map11113.39UniSTS
Cytogenetic Map1q32UniSTS


The following Strains have been annotated to Tyr


This gene Tyr is modified in the following models/strains:
KFRS2/Kyo     DA-Tyrem1Kyo     KFRS2/Kyo-/+    




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 10 16 97 51 49 19 24 19 6 112 62 77 15 29 30


RefSeq Transcripts NM_001107535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000021971   ⟹   ENSRNOP00000021971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1141,115,036 - 141,210,207 (-)Ensembl
Rnor_6.0 Ensembl1151,012,598 - 151,106,802 (-)Ensembl
RefSeq Acc Id: NM_001107535   ⟹   NP_001101005
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,527,687 - 150,622,857 (-)NCBI
mRatBN7.21141,115,036 - 141,210,207 (-)NCBI
Rnor_6.01151,012,598 - 151,106,802 (-)NCBI
Rnor_5.01157,322,968 - 157,416,594 (-)NCBI
RGSC_v3.41143,641,257 - 143,746,315 (-)RGD
Celera1139,445,261 - 139,532,999 (-)RGD
Sequence:
Protein RefSeqs NP_001101005 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM18593 (Get FASTA)   NCBI Sequence Viewer  
  EDM18594 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021971
  ENSRNOP00000021971.4
RefSeq Acc Id: NP_001101005   ⟸   NM_001107535
- Peptide Label: precursor
- UniProtKB: D4A9G4 (UniProtKB/TrEMBL),   A6I5Y6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021971   ⟸   ENSRNOT00000021971
Tyrosinase copper-binding

Name Modeler Protein Id AA Range Protein Structure
AF-D4A9G4-F1-model_v2 AlphaFold D4A9G4 1-530 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 26 of 26 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-58587 BioCyc
BioCyc Pathway PWY-6481 [L-dopa and L-dopachrome biosynthesis] BioCyc
  PWY-7917 [pheomelanin biosynthesis] BioCyc
BioCyc Pathway Image PWY-6481 BioCyc
  PWY-7917 BioCyc
Ensembl Genes ENSRNOG00000016421 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021971 ENTREZGENE
  ENSRNOT00000021971.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1280.10 UniProtKB/TrEMBL
InterPro Di-copper_centre UniProtKB/TrEMBL
  Tyrosinase UniProtKB/TrEMBL
  Tyrosinase/Hemocyanin UniProtKB/TrEMBL
KEGG Report rno:308800 UniProtKB/TrEMBL
NCBI Gene 308800 ENTREZGENE
PANTHER TYROSINASE UniProtKB/TrEMBL
  TYROSINASE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Tyrosinase UniProtKB/TrEMBL
PhenoGen Tyr PhenoGen
PRINTS TYROSINASE UniProtKB/TrEMBL
PROSITE TYROSINASE_1 UniProtKB/TrEMBL
  TYROSINASE_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016421 RatGTEx
Superfamily-SCOP Di-copper_centre UniProtKB/TrEMBL
UniProt A6I5Y6 ENTREZGENE, UniProtKB/TrEMBL
  A6I5Y7_RAT UniProtKB/TrEMBL
  D4A9G4 ENTREZGENE, UniProtKB/TrEMBL
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2007-02-12   tyrosinase  Tyr  tyrosinase (albino coat color) (mapped)  Name updated to reflect Human and Mouse nomenclature 1299863 PROVISIONAL
2007-02-12 Tyr  tyrosinase (albino coat color) (mapped)  Tyr_mapped  tyrosinase (albino coat color) (mapped)  Data merged from RGD:3922 1299863 PROVISIONAL
2006-11-19 Tyr  tyrosinase (albino coat color) (mapped)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 Tyr_mapped  tyrosinase (albino coat color) (mapped)  Tyr  tyrosinase  Symbol and Name updated 1556543 APPROVED
2002-06-10 Tyr  Tyrosinase (albino coat color)      Symbol and Name status set to approved 70586 APPROVED