Pcgf1 (polycomb group ring finger 1) - Rat Genome Database

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Gene: Pcgf1 (polycomb group ring finger 1) Rattus norvegicus
Analyze
Symbol: Pcgf1
Name: polycomb group ring finger 1
RGD ID: 1549782
Description: Predicted to enable promoter-specific chromatin binding activity. Predicted to be involved in chromatin remodeling and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of PRC1 complex. Orthologous to human PCGF1 (polycomb group ring finger 1); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC103692167; nervous system polycomb 1; nervous system Polycomb-1; Nspc1; polycomb group RING finger protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,140,144 - 117,144,729 (+)NCBIGRCr8
mRatBN7.24115,576,165 - 115,587,019 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4115,583,867 - 115,587,008 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,060,942 - 121,063,610 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04116,836,134 - 116,838,802 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04115,450,721 - 115,453,389 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04113,911,129 - 113,913,718 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4113,910,685 - 113,913,687 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04178,596,101 - 178,598,690 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,290,410 - 117,292,999 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4104,578,940 - 104,581,529 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (ISO)
PcG protein complex  (IEA,ISO,ISS)
PRC1 complex  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. PRC1 complex diversity: where is it taking us? Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
7. Age-related alterations in retinal neurovascular and inflammatory transcripts. Van Kirk CA, etal., Mol Vis. 2011;17:1261-74. Epub 2011 May 7.
Additional References at PubMed
PMID:15620699   PMID:16943429   PMID:21282530   PMID:26151332   PMID:28596365  


Genomics

Comparative Map Data
Pcgf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,140,144 - 117,144,729 (+)NCBIGRCr8
mRatBN7.24115,576,165 - 115,587,019 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4115,583,867 - 115,587,008 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,060,942 - 121,063,610 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04116,836,134 - 116,838,802 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04115,450,721 - 115,453,389 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04113,911,129 - 113,913,718 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4113,910,685 - 113,913,687 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04178,596,101 - 178,598,690 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,290,410 - 117,292,999 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4104,578,940 - 104,581,529 (+)NCBICelera
Cytogenetic Map4q34NCBI
PCGF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,505,043 - 74,507,695 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,505,043 - 74,507,695 (-)EnsemblGRCh38hg38GRCh38
GRCh37274,732,170 - 74,734,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,585,678 - 74,588,329 (-)NCBINCBI36Build 36hg18NCBI36
Build 34274,643,825 - 74,646,441NCBI
Celera274,563,334 - 74,565,985 (-)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,468,431 - 74,471,082 (-)NCBIHuRef
CHM1_1274,661,580 - 74,664,231 (-)NCBICHM1_1
T2T-CHM13v2.0274,513,608 - 74,522,718 (-)NCBIT2T-CHM13v2.0
Pcgf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,047,573 - 83,057,836 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,054,850 - 83,057,836 (+)EnsemblGRCm39 Ensembl
GRCm38683,077,552 - 83,080,855 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,077,869 - 83,080,855 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,028,384 - 83,030,849 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,044,048 - 83,046,513 (+)NCBIMGSCv36mm8
Celera685,060,962 - 85,063,427 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
Pcgf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,282,091 - 11,286,753 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,282,562 - 11,284,970 (+)NCBIChiLan1.0ChiLan1.0
PCGF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21251,879,959 - 51,884,137 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A51,883,903 - 51,886,893 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A74,571,721 - 74,574,468 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A76,077,962 - 76,080,714 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A76,077,962 - 76,080,720 (-)Ensemblpanpan1.1panPan2
PCGF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,633,207 - 48,642,435 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,633,332 - 48,635,554 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,274,395 - 48,283,486 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01749,491,958 - 49,501,052 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1749,492,226 - 49,495,088 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11748,509,085 - 48,518,179 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01748,575,839 - 48,584,927 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,133,545 - 49,142,643 (+)NCBIUU_Cfam_GSD_1.0
Pcgf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629210,015,424 - 10,018,322 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936556718,615 - 721,908 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936556719,601 - 722,339 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCGF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1368,540,674 - 68,543,271 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,865,575 - 71,868,290 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCGF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,769,805 - 32,772,806 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1432,770,492 - 32,772,804 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604579,398,487 - 79,401,700 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcgf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474929,004,390 - 29,010,393 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474928,999,506 - 29,007,744 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcgf1
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:84
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000011173
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat

Markers in Region
AU024121  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24115,586,713 - 115,586,885 (+)MAPPERmRatBN7.2
Rnor_6.04113,913,421 - 113,913,592NCBIRnor6.0
Rnor_6.04114,779,149 - 114,779,320NCBIRnor6.0
Rnor_5.04178,598,393 - 178,598,564UniSTSRnor5.0
RGSC_v3.44117,292,702 - 117,292,873UniSTSRGSC3.4
Celera4104,581,232 - 104,581,403UniSTS
Cytogenetic Map4q34UniSTS
RH139696  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24115,583,602 - 115,583,790 (+)MAPPERmRatBN7.2
Rnor_6.04114,776,038 - 114,776,225NCBIRnor6.0
Rnor_6.04113,910,310 - 113,910,497NCBIRnor6.0
Rnor_5.04178,595,282 - 178,595,469UniSTSRnor5.0
RGSC_v3.44117,289,591 - 117,289,778UniSTSRGSC3.4
Celera4104,578,121 - 104,578,308UniSTS
Cytogenetic Map4q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 7 7 15
Below cutoff 2 22 20 16 12 16 2 2 57 35 24 10 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011173   ⟹   ENSRNOP00000011173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,583,867 - 115,586,975 (+)Ensembl
Rnor_6.0 Ensembl4113,910,685 - 113,913,687 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089635   ⟹   ENSRNOP00000070914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,584,370 - 115,587,008 (+)Ensembl
Rnor_6.0 Ensembl4114,776,797 - 114,779,446 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102339   ⟹   ENSRNOP00000093754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,585,151 - 115,587,008 (+)Ensembl
RefSeq Acc Id: NM_001007000   ⟹   NP_001007001
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,142,061 - 117,144,729 (+)NCBI
mRatBN7.24115,584,344 - 115,587,012 (+)NCBI
Rnor_6.04113,911,129 - 113,913,718 (+)NCBI
Rnor_5.04178,596,101 - 178,598,690 (+)NCBI
RGSC_v3.44117,290,410 - 117,292,999 (+)RGD
Celera4104,578,940 - 104,581,529 (+)RGD
Sequence:
RefSeq Acc Id: XM_039107592   ⟹   XP_038963520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,140,144 - 117,144,729 (+)NCBI
mRatBN7.24115,583,550 - 115,587,019 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001007001 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963520 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAT74859 (Get FASTA)   NCBI Sequence Viewer  
  EDL91116 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011173
  ENSRNOP00000011173.6
  ENSRNOP00000070914
  ENSRNOP00000070914.1
  ENSRNOP00000093754.1
GenBank Protein Q6DLV9 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001007001   ⟸   NM_001007000
- UniProtKB: Q6DLV9 (UniProtKB/Swiss-Prot),   A0A0G2JZ54 (UniProtKB/TrEMBL),   A6IAJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011173   ⟸   ENSRNOT00000011173
RefSeq Acc Id: XP_038963520   ⟸   XM_039107592
- Peptide Label: isoform X1
- UniProtKB: G3V730 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000070914   ⟸   ENSRNOT00000089635
RefSeq Acc Id: ENSRNOP00000093754   ⟸   ENSRNOT00000102339
Protein Domains
RAWUL   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6DLV9-F1-model_v2 AlphaFold Q6DLV9 1-243 view protein structure
AF-G3V730-F1-model_v2 AlphaFold G3V730 1-259 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1549782 AgrOrtholog
BioCyc Gene G2FUF-44030 BioCyc
Ensembl Genes ENSRNOG00000008360 Ensembl
  ENSRNOG00000051433 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011173.7 UniProtKB/TrEMBL
  ENSRNOT00000089635 ENTREZGENE
  ENSRNOT00000089635.2 UniProtKB/TrEMBL
  ENSRNOT00000102339.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RAWUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:312480 UniProtKB/Swiss-Prot
NCBI Gene 312480 ENTREZGENE
PANTHER POLYCOMB GROUP RING FINGER PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RAWUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pcgf1 PhenoGen
PROSITE ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008360 RatGTEx
  ENSRNOG00000051433 RatGTEx
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0G2JZ54 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AI51_RAT UniProtKB/TrEMBL
  A6IAJ8 ENTREZGENE, UniProtKB/TrEMBL
  G3V730 ENTREZGENE, UniProtKB/TrEMBL
  PCGF1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pcgf1  polycomb group ring finger 1  LOC103692167  polycomb group RING finger protein 1  Data merged from RGD:9188290 737654 PROVISIONAL
2014-08-25 LOC103692167  polycomb group RING finger protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Pcgf1  polycomb group ring finger 1  Nspc1  nervous system polycomb 1  Symbol and Name updated 1299863 APPROVED
2005-09-15 Nspc1  nervous system polycomb 1      Symbol and Name status set to provisional 70820 PROVISIONAL