Pcgf1 (polycomb group ring finger 1)

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Gene: Pcgf1 (polycomb group ring finger 1) Mus musculus

Analyze

Symbol:

Pcgf1

Name:

polycomb group ring finger 1

RGD ID:

1557454

MGI Page

MGI

Description:

Is expressed in several structures, including adrenal gland; cardiac muscle tissue; genitourinary system; nervous system; and otocyst. Orthologous to human PCGF1 (polycomb group ring finger 1); PARTICIPATES IN histone modification pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

2010002K04Rik; AU024121; nervous system polycomb 1; nervous system Polycomb-1; Ns; Nspc1; polycomb group RING finger protein 1; RING finger protein 68

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PCGF1 (polycomb group ring finger 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Pcgf1 (polycomb group ring finger 1)	HGNC	Treefam, EggNOG, OrthoMCL, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Pcgf1 (polycomb group ring finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PCGF1 (polycomb group ring finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PCGF1 (polycomb group ring finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pcgf1 (polycomb group ring finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PCGF1 (polycomb group ring finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	PCGF1 (polycomb group ring finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pcgf1 (polycomb group ring finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PCGF1 (polycomb group ring finger 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Rattus norvegicus (Norway rat):	Pcgf1 (polycomb group ring finger 1)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Rattus norvegicus (Norway rat):	LOC103692167 (polycomb group RING finger protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	pcgf1 (polycomb group ring finger 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|ZFIN)

Related Pseudogenes:

Gm8930

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	83,054,173 - 83,057,836 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	83,054,850 - 83,057,836 (+)	Ensembl
GRCm38	6	83,077,552 - 83,080,855 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	83,077,869 - 83,080,855 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	83,028,384 - 83,030,849 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	83,044,048 - 83,046,513 (+)	NCBI			mm8
Celera	6	85,060,962 - 85,063,427 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	35.94	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (ISO)

2-hydroxypropanoic acid (ISO)

4-amino-2,6-dinitrotoluene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (ISO)

choline (EXP)

copper(II) sulfate (ISO)

cycloheximide (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

endosulfan (ISO)

folic acid (EXP)

L-methionine (EXP)

oxaliplatin (ISO)

paracetamol (EXP)

phenobarbital (ISO)

rac-lactic acid (ISO)

sunitinib (ISO)

titanium dioxide (EXP)

topotecan (ISO)

tungsten (EXP)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aging (ISO)

chromatin silencing (IBA)

histone H2A monoubiquitination (ISO)

histone H2A-K119 monoubiquitination (IBA,ISO)

negative regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (ISO)

nucleus (IDA,ISO)

PcG protein complex (IDA,ISO)

PRC1 complex (IBA)

Molecular Function

metal ion binding (IEA)

promoter-specific chromatin binding (IBA)

protein binding (IPI,ISO)

protein C-terminus binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal embryo size (IEA)

abnormal embryo turning (IEA)

abnormal forebrain development (IEA)

abnormal heart looping (IEA)

abnormal heart morphology (IEA)

abnormal midbrain development (IEA)

abnormal neural tube closure (IEA)

abnormal pharyngeal arch morphology (IEA)

embryonic lethality prior to tooth bud stage (IEA)

preweaning lethality, complete penetrance (IEA)

References

References - curated


1.	Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
2.	Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4.	Ko MS, etal., Development 2000 Apr;127(8):1737-49.
5.	MGD data from the GO Consortium
6.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7.	RGD automated import pipeline
8.	RGD automated import pipeline for gene-chemical interactions
9.	Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.

Additional References at PubMed

PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11287196	PMID:12477932	PMID:14610273	PMID:15489334	PMID:16141072	PMID:16141073	PMID:17296600	PMID:18287559
PMID:21267068	PMID:21677750	PMID:21873635	PMID:22174793	PMID:22325148	PMID:22411870	PMID:23395003	PMID:24113379	PMID:24194600	PMID:24457600	PMID:26496610	PMID:27705745
PMID:28393894	PMID:28596365	PMID:29727681

Genomics

Comparative Map Data

Pcgf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	83,054,173 - 83,057,836 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	83,054,850 - 83,057,836 (+)	Ensembl
GRCm38	6	83,077,552 - 83,080,855 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	83,077,869 - 83,080,855 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	83,028,384 - 83,030,849 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	83,044,048 - 83,046,513 (+)	NCBI			mm8
Celera	6	85,060,962 - 85,063,427 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	35.94	NCBI

PCGF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	74,505,043 - 74,507,695 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	74,505,043 - 74,507,695 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	74,732,170 - 74,734,822 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	74,585,678 - 74,588,329 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	74,643,825 - 74,646,441	NCBI
Celera	2	74,563,334 - 74,565,985 (-)	NCBI
Cytogenetic Map	2	p13.1	NCBI
HuRef	2	74,468,431 - 74,471,082 (-)	NCBI		HuRef
CHM1_1	2	74,661,580 - 74,664,231 (-)	NCBI		CHM1_1

Pcgf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	115,576,165 - 115,587,019 (+)	NCBI
Rnor_6.0 Ensembl	4	113,910,685 - 113,913,687 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	113,911,129 - 113,913,718 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	178,596,101 - 178,598,690 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	117,290,410 - 117,292,999 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	4	104,578,940 - 104,581,529 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Pcgf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	11,282,091 - 11,286,753 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	11,282,562 - 11,284,970 (+)	NCBI	ChiLan1.0	ChiLan1.0

PCGF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	76,077,962 - 76,080,714 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	76,077,962 - 76,080,720 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	74,571,721 - 74,574,468 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

PCGF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	17	48,633,332 - 48,635,554 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	17	48,633,207 - 48,642,435 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Pcgf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936556	719,601 - 722,339 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCGF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	68,540,674 - 68,543,271 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	71,865,575 - 71,868,290 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCGF1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	32,769,805 - 32,772,806 (+)	NCBI
ChlSab1.1 Ensembl	14	32,770,492 - 32,772,804 (+)	Ensembl

Pcgf1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	28,999,506 - 29,007,744 (+)	NCBI

Position Markers

AU024121

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	22,734,383 - 22,734,468	UniSTS	GRCm38
GRCm38	6	83,080,563 - 83,080,727	UniSTS	GRCm38
MGSCv37	6	22,684,383 - 22,684,468	UniSTS	GRCm37
MGSCv37	6	83,030,557 - 83,030,721	UniSTS	GRCm37
Celera	6	85,063,135 - 85,063,299	UniSTS
Celera	6	22,781,756 - 22,781,841	UniSTS
Cytogenetic Map	6	C3	UniSTS
Cytogenetic Map	6	A3.1	UniSTS
cM Map	6	35.0	UniSTS
Whitehead/MRC_RH	6	850.27	UniSTS

RH99023

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	22,734,242 - 22,734,386	UniSTS	GRCm38
MGSCv37	6	22,684,242 - 22,684,386	UniSTS	GRCm37
Celera	6	22,781,615 - 22,781,759	UniSTS
Cytogenetic Map	6	A3.1	UniSTS
Cytogenetic Map	6	C3	UniSTS
cM Map	6	35.0	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87426034	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45314059	87426034	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1301254	Skts11_m	skin tumor susceptibility 11 (mouse)			Not determined		6	51179150	85179300	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54373427	88379171	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
4141990	Etax6_m	ethanol induced ataxia 6 (mouse)			Not determined			71322621	86275719	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71575060	105575178	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71981024	105981170	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71981024	105981170	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73500000	134700000	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75447583	104503555	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75544356	92607450	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75544356	94225955	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75544356	94225955	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75607306	109607450	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75716503	109716697	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76463949	110464093	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77100000	90000000	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	78000000	97000000	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78629504	121115387	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81500000	102200000	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1281
Count of miRNA genes:	490
Interacting mature miRNAs:	549
Transcripts:	ENSMUST00000092614, ENSMUST00000165164, ENSMUST00000176027, ENSMUST00000176089, ENSMUST00000176100, ENSMUST00000176372, ENSMUST00000177177
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_197992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030255588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC104324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC134899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK008048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC028560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000092614 ⟹ ENSMUSP00000090277

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,078,390 - 83,080,847 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000165164 ⟹ ENSMUSP00000130614

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,078,346 - 83,080,855 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000176027 ⟹ ENSMUSP00000135664

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,078,630 - 83,080,757 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000176089 ⟹ ENSMUSP00000135268

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,078,691 - 83,080,757 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000176100 ⟹ ENSMUSP00000135882

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,077,869 - 83,078,995 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000176372

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,080,020 - 83,080,854 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000177177 ⟹ ENSMUSP00000135291

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,078,630 - 83,080,854 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000204211

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,078,718 - 83,079,710 (+)	Ensembl

RefSeq Acc Id:

NM_197992 ⟹ NP_932109

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	83,055,371 - 83,057,836 (+)	NCBI
GRCm38	6	83,078,390 - 83,080,855 (+)	ENTREZGENE
MGSCv37	6	83,028,384 - 83,030,849 (+)	RGD
Celera	6	85,060,962 - 85,063,427 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

CGTCTCCTCAGGGGGGCCAGATTGCGATCGCGATGAGGCTTCGGAACCAGCTCCAGTCAGTGTA
CAAGATGGACCCACTACGGAACGAGGAGGAGGTCCGGGTGAAGATCAAAGACCTGAATGAACAC
ATCGTTTGCTGCCTGTGCGCGGGCTACTTCGTGGATGCCACCACCATCACAGAGTGTCTCCACA
CCTTCTGCAAAAGTTGTATCGTGAAGTACCTGCAAACCAGCAAGTACTGCCCCATGTGCAACAT
CAAGATCCACGAGACGCAGCCGTTGCTCAATCTCAAACTGGATCGGGTCATGCAGGACATAGTG
TATAAGCTAGTGCCAGGCTTGCAAGACAGTGAAGAGAAACGGATTCGGGAATTCTATCAGTCCC
GAGGCTTAGACAGAGTCTCCCAGCCCAGTGGTGAAGAGCCAGCCCTGAGCAACCTTGGCCTCCC
CTTCAGCAGTTTTGACCACTCTAAAGCCCACTATTATCGATATGATGAACAGCTGAGCCTATGC
CTGGAGCGGCTGAGTTCTGGCAAAGACAAGAATAAAAATGTCCTTCAGAACAAGTATGTTCGGT
GTTCTGTGAGAGCTGAGGTCCGCCATCTCCGAAGGGTTCTGTGTCACCGACTAATGCTAAATCC
ACAGCATGTACAGCTCCTTTTTGACAATGAGGTTCTCCCAGATCACATGACAATGAAACAGCTA
TGGCTGTCCCGCTGGTTCGGCAAGCCATCTCCTTTGCTTCTCCAATACAGTGTGAAAGAGAAGA
GGAGGTAGGGGCCAGGCTTGCTTCCACCCCCTTCCCACCCCTCCCCAGATATTTATGTGAAATT
AACTGTGGCTTTATTTTTTGAAATAAATGCTTTTAAAAAGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_030255588 ⟹ XP_030111448

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	83,054,173 - 83,057,836 (+)	NCBI
GRCm38	6	83,077,552 - 83,080,855 (+)	NCBI

Sequence:

show sequence

TTCTTTTAAAATTCCGCCGTAGGGACCCAGTGATGACAGTGTACCAGACCCGGGAACCCCTGTG
TCCTCCCCAAGTGCGGGCCCGGGCCTATGCTACTGCAGGCACTCGCTGCCCAAGTCTCCTCGCT
GTCAATCCTCCCCTCCTCCTTCGGCATCTGCTCTGCATTAGTCTGTCCCAGGCCTCCGCAGGCG
CCGATGATTAAATCATCATCATTAGCCAGGGCCTATTCTCCCCATCCTCGGCAGCAGGGAGAGA
GTGGGGAGTAAGAGCTCCCGGTTCCCCGGGGGGTCTCTCCCTCTCCACCCCGCCCAGGGCACCC
TCTCCCAGACTTCGCGAGCCCGGAAAAAACTCCCGCGGCGCAGACGGGAGAAGGCCCGCGGCTG
GGACGCAGCTCCGCAACGCGGACGCCGCAGCGGAGCAGGACTGCACTGTATAGAGAGGACCCCG
GGTCGGAGGCGAGGTCGGGTCCCAGGACTCCCACACTCCGGAGCTGTAGCGGCGGGCGATAGCC
CGGCTTCGGGGTCCCAGGGCACACAGGCTCTCTTAGCACAAGCTACCGAAGTTGATCCAGAGGT
TGTGTGCGCGCCGTTGGAAGGACGCCCGTGGGAGCGTGCACCGCAGAGACCCTGCTTCACTCAA
CCCCCCTCCATAACGACCACCGATTGTTGGGGGGGCAGCGGGCTCAGGAGGAGGTCCGGGTGAA
GATCAAAGACCTGAATGAACACATCGTTTGCTGCCTGTGCGCGGGCTACTTCGTGGATGCCACC
ACCATCACAGAGTGTCTCCACACCTTCTGCAAAAGTTGTATCGTGAAGTACCTGCAAACCAGCA
AGTACTGCCCCATGTGCAACATCAAGATCCACGAGACGCAGCCGTTGCTCAATCTCAAACTGGA
TCGGGTCATGCAGGACATAGTGTATAAGCTAGTGCCAGGCTTGCAAGACAGTGAAGAGAAACGG
ATTCGGGAATTCTATCAGTCCCGAGGCTTAGACAGAGTCTCCCAGCCCAGTGGTGAAGAGCCAG
CCCTGAGCAACCTTGGCCTCCCCTTCAGCAGTTTTGACCACTCTAAAGCCCACTATTATCGATA
TGATGAACAGCTGAGCCTATGCCTGGAGCGGCTGAGTTCTGGCAAAGACAAGAATAAAAATGTC
CTTCAGAACAAGTATGTTCGGTGTTCTGTGAGAGCTGAGGTCCGCCATCTCCGAAGGGTTCTGT
GTCACCGACTAATGCTAAATCCACAGCATGTACAGCTCCTTTTTGACAATGAGGTTCTCCCAGA
TCACATGACAATGAAACAGCTATGGCTGTCCCGCTGGTTCGGCAAGCCATCTCCTTTGCTTCTC
CAATACAGTGTGAAAGAGAAGAGGAGGTAGGGGCCAGGCTTGCTTCCACCCCCTTCCCACCCCT
CCCCAGATATTTATGTGAAATTAACTGTGGCTTTATTTTTTGAAATAAATGCTTTTAAAAAGCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_932109	(Get FASTA)	NCBI Sequence Viewer
	XP_030111448	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH28560	(Get FASTA)	NCBI Sequence Viewer
	Q8R023	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_932109 ⟸ NM_197992

- UniProtKB:

Q8R023 (UniProtKB/Swiss-Prot), A0A0R4J141 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRLRNQLQSVYKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYL
QTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSRGLDRVSQPSG
EEPALSNLGLPFSSFDHSKAHYYRYDEQLSLCLERLSSGKDKNKNVLQNKYVRCSVRAEVRHLR
RVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQLWLSRWFGKPSPLLLQYSVKEKRR

hide sequence

RefSeq Acc Id:	XP_030111448 ⟸ XM_030255588
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSMUSP00000135291 ⟸ ENSMUST00000177177

RefSeq Acc Id:

ENSMUSP00000090277 ⟸ ENSMUST00000092614

RefSeq Acc Id:

ENSMUSP00000130614 ⟸ ENSMUST00000165164

RefSeq Acc Id:

ENSMUSP00000135664 ⟸ ENSMUST00000176027

RefSeq Acc Id:

ENSMUSP00000135268 ⟸ ENSMUST00000176089

RefSeq Acc Id:

ENSMUSP00000135882 ⟸ ENSMUST00000176100

Protein Domains

RAWUL RING-type

Promoters

RGD ID:

6839731

Promoter ID:

MM_KWN:46568

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6

Transcripts:

NM_197992, UC009CMH.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	83,027,736 - 83,028,552 (+)	MPROMDB

RGD ID:

6890122

Promoter ID:

EPDNEW_M8511

Type:

initiation region

Name:

Pcgf1_1

Description:

Mus musculus polycomb group ring finger 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M8512

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	83,078,379 - 83,078,439	EPDNEW

RGD ID:

6890124

Promoter ID:

EPDNEW_M8512

Type:

initiation region

Name:

Pcgf1_2

Description:

Mus musculus polycomb group ring finger 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M8511

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	83,078,626 - 83,078,686	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1917087	AgrOrtholog
Ensembl Genes	ENSMUSG00000069678	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000090277	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000130614	UniProtKB/Swiss-Prot
	ENSMUSP00000135268	UniProtKB/TrEMBL
	ENSMUSP00000135291	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000135664	UniProtKB/TrEMBL
	ENSMUSP00000135882	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000092614	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000165164	UniProtKB/Swiss-Prot
	ENSMUST00000176027	UniProtKB/TrEMBL
	ENSMUST00000176089	UniProtKB/TrEMBL
	ENSMUST00000176100	UniProtKB/TrEMBL
	ENSMUST00000177177	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	RAWUL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ubiquitin-rel_dom	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:69837	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1917087	ENTREZGENE
NCBI Gene	69837	ENTREZGENE
Pfam	RAWUL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Pcgf1	PhenoGen
PROSITE	ZF_RING_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	RING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54236	UniProtKB/TrEMBL
UniProt	A0A0R4J141	ENTREZGENE, UniProtKB/TrEMBL
	H3BK63_MOUSE	UniProtKB/TrEMBL
	H3BK85_MOUSE	UniProtKB/TrEMBL
	H3BL61_MOUSE	UniProtKB/TrEMBL
	H3BLR0_MOUSE	UniProtKB/TrEMBL
	PCGF1_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations