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Gene: Hrob (homologous recombination factor with OB-fold) Rattus norvegicus

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Symbol:

Hrob

Name:

homologous recombination factor with OB-fold

RGD ID:

1305385

Description:

Predicted to enable single-stranded DNA binding activity. Predicted to be involved in DNA repair; female gamete generation; and male gamete generation. Predicted to be located in site of DNA damage. Orthologous to human HROB (homologous recombination factor with OB-fold); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ankyrin repeat and socs box-containing 16; asb16; E2F1-inducible; E2F1-inducible gene; hypothetical protein LOC303566; LOC303566; uncharacterized protein C17orf53 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	87,705,846 - 87,722,635 (+)	NCBI		GRCr8
mRatBN7.2	10	87,206,017 - 87,222,483 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	87,206,049 - 87,222,483 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	92,235,757 - 92,252,069 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	91,707,723 - 91,724,057 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	87,101,040 - 87,117,376 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	90,192,608 - 90,214,486 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	90,192,627 - 90,214,486 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	89,978,419 - 90,001,064 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	91,329,706 - 91,347,594 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	91,344,075 - 91,361,964 (+)	NCBI
Celera	10	85,922,100 - 85,938,261 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hrob	Rat	GRN-related frontotemporal lobar degeneration with TDP43 inclusions		ISO	RGD:1602101	8554872	ClinVar Annotator: match by term: GRN-related frontotemporal lobar degeneration with Tdp43 inclusions	ClinVar	PMID:28492532
Hrob	Rat	hereditary breast ovarian cancer syndrome		ISO	RGD:1602101	8554872	ClinVar Annotator: match by term: Breast-ovarian cancer, familial, susceptibility to, 1	ClinVar	PMID:38922859
Hrob	Rat	Ovarian Dysgenesis 11		ISO	RGD:1602101	8554872	ClinVar Annotator: match by term: Ovarian dysgenesis 11	ClinVar	PMID:34707299\|PMID:38105698
Hrob	Rat	primary ovarian insufficiency		ISO	RGD:1602101	8554872	ClinVar Annotator: match by term: Premature ovarian insufficiency	ClinVar	PMID:34707299

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hrob	Rat	Ovarian Dysgenesis 11		ISO	RGD:1602101	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hrob	Rat	17beta-estradiol	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of HROB mRNA	CTD	PMID:32741896
Hrob	Rat	17beta-estradiol 3-benzoate	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of HROB mRNA	CTD	PMID:32741896
Hrob	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of HROB mRNA	CTD	PMID:33387578
Hrob	Rat	acrylamide	decreases expression	ISO	RGD:1602101	6480464	Acrylamide results in decreased expression of HROB mRNA	CTD	PMID:32763439
Hrob	Rat	aflatoxin B1	increases expression	ISO	RGD:1602101	6480464	Aflatoxin B1 results in increased expression of HROB mRNA	CTD	PMID:22100608
Hrob	Rat	all-trans-retinoic acid	decreases expression	ISO	RGD:1602101	6480464	Tretinoin results in decreased expression of HROB mRNA	CTD	PMID:33167477
Hrob	Rat	aristolochic acid A	increases expression	ISO	RGD:1602101	6480464	aristolochic acid I results in increased expression of HROB mRNA	CTD	PMID:33212167
Hrob	Rat	arsane	multiple interactions	ISO	RGD:1602101	6480464	[sodium arsenate results in increased abundance of Arsenic] which results in increased expression of HROB more ...	CTD	PMID:32525701
Hrob	Rat	arsenic atom	multiple interactions	ISO	RGD:1602101	6480464	[sodium arsenate results in increased abundance of Arsenic] which results in increased expression of HROB more ...	CTD	PMID:32525701
Hrob	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1602101	6480464	Benzo(a)pyrene affects the methylation of HROB promoter	CTD	PMID:27901495
Hrob	Rat	benzo[a]pyrene	increases expression	ISO	RGD:1602101	6480464	Benzo(a)pyrene results in increased expression of HROB mRNA	CTD	PMID:32234424
Hrob	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of HROB mRNA	CTD	PMID:25181051
Hrob	Rat	bisphenol A	increases expression	ISO	RGD:1602101	6480464	bisphenol A results in increased expression of HROB mRNA	CTD	PMID:36232920
Hrob	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of HROB mRNA	CTD	PMID:32145629
Hrob	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with tributyltin] results in decreased expression of HROB mRNA	CTD	PMID:31129395
Hrob	Rat	bisphenol A	decreases expression	ISO	RGD:1602101	6480464	bisphenol A results in decreased expression of HROB mRNA	CTD	PMID:27685785\|PMID:29275510
Hrob	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of HROB mRNA	CTD	PMID:33453195
Hrob	Rat	calcitriol	multiple interactions	ISO	RGD:1602101	6480464	[Testosterone co-treated with Calcitriol] results in decreased expression of HROB mRNA	CTD	PMID:21592394
Hrob	Rat	calcitriol	decreases expression	ISO	RGD:1602101	6480464	Calcitriol results in decreased expression of HROB mRNA	CTD	PMID:21592394
Hrob	Rat	cannabidiol	increases expression	ISO	RGD:1602101	6480464	Cannabidiol results in increased expression of HROB mRNA	CTD	PMID:27918106
Hrob	Rat	cisplatin	multiple interactions	ISO	RGD:1602101	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of HROB mRNA	CTD	PMID:27392435
Hrob	Rat	cisplatin	increases expression	ISO	RGD:1602101	6480464	Cisplatin results in increased expression of HROB mRNA	CTD	PMID:27392435
Hrob	Rat	copper(II) sulfate	decreases expression	ISO	RGD:1602101	6480464	Copper Sulfate results in decreased expression of HROB mRNA	CTD	PMID:19549813
Hrob	Rat	diquat	decreases expression	ISO	RGD:1622992	6480464	Diquat results in decreased expression of HROB mRNA	CTD	PMID:36851058
Hrob	Rat	doxorubicin	decreases expression	ISO	RGD:1602101	6480464	Doxorubicin results in decreased expression of HROB mRNA	CTD	PMID:29803840
Hrob	Rat	FR900359	increases phosphorylation	ISO	RGD:1602101	6480464	FR900359 results in increased phosphorylation of HROB protein	CTD	PMID:37730182
Hrob	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of HROB mRNA	CTD	PMID:33387578
Hrob	Rat	methyl methanesulfonate	increases expression	ISO	RGD:1602101	6480464	Methyl Methanesulfonate results in increased expression of HROB mRNA	CTD	PMID:23649840
Hrob	Rat	N-methyl-4-phenylpyridinium	decreases expression	ISO	RGD:1602101	6480464	1-Methyl-4-phenylpyridinium results in decreased expression of HROB mRNA	CTD	PMID:24810058
Hrob	Rat	okadaic acid	increases expression	ISO	RGD:1602101	6480464	Okadaic Acid results in increased expression of HROB mRNA	CTD	PMID:38832940
Hrob	Rat	ozone	multiple interactions	ISO	RGD:1622992	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in increased more ...	CTD	PMID:34911549
Hrob	Rat	paracetamol	increases expression	ISO	RGD:1602101	6480464	Acetaminophen results in increased expression of HROB mRNA	CTD	PMID:22230336
Hrob	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of HROB mRNA	CTD	PMID:33387578
Hrob	Rat	paracetamol	decreases expression	ISO	RGD:1602101	6480464	Acetaminophen results in decreased expression of HROB mRNA	CTD	PMID:29067470
Hrob	Rat	potassium chromate	increases expression	ISO	RGD:1602101	6480464	potassium chromate(VI) results in increased expression of HROB mRNA	CTD	PMID:22714537
Hrob	Rat	silicon dioxide	increases expression	ISO	RGD:1622992	6480464	Silicon Dioxide results in increased expression of HROB mRNA	CTD	PMID:29341224
Hrob	Rat	sodium arsenate	multiple interactions	ISO	RGD:1602101	6480464	[sodium arsenate results in increased abundance of Arsenic] which results in increased expression of HROB more ...	CTD	PMID:32525701
Hrob	Rat	sodium arsenite	decreases expression	ISO	RGD:1602101	6480464	sodium arsenite results in decreased expression of HROB mRNA	CTD	PMID:38568856
Hrob	Rat	sunitinib	decreases expression	ISO	RGD:1602101	6480464	Sunitinib results in decreased expression of HROB mRNA	CTD	PMID:31533062
Hrob	Rat	testosterone	decreases expression	ISO	RGD:1602101	6480464	Testosterone results in decreased expression of HROB mRNA	CTD	PMID:21592394
Hrob	Rat	testosterone	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of HROB mRNA	CTD	PMID:32741896
Hrob	Rat	testosterone	multiple interactions	ISO	RGD:1602101	6480464	[Testosterone co-treated with Calcitriol] results in decreased expression of HROB mRNA	CTD	PMID:21592394
Hrob	Rat	tributylstannane	multiple interactions	EXP		6480464	[bisphenol A co-treated with tributyltin] results in decreased expression of HROB mRNA	CTD	PMID:31129395
Hrob	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of HROB mRNA	CTD	PMID:33387578

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hrob	Rat	DNA biosynthetic process	involved_in	IEA	UniProtKB-KW:KW-0237	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Hrob	Rat	DNA damage response	involved_in	ISS	UniProtKB:Q8N3J3	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Hrob	Rat	DNA damage response	involved_in	IEA	UniProtKB:Q8N3J3\|ensembl:ENSP00000466618	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hrob	Rat	DNA damage response	involved_in	IEA	UniProtKB-KW:KW-0227	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Hrob	Rat	DNA damage response	involved_in	ISO	RGD:1602101	1624291	PMID:31467087	RGD	PMID:31467087
Hrob	Rat	DNA recombination	involved_in	IEA	UniProtKB-KW:KW-0233	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Hrob	Rat	DNA repair	involved_in	IEA	UniProtKB-KW:KW-0234	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Hrob	Rat	DNA synthesis involved in DNA repair	involved_in	ISS	UniProtKB:Q8N3J3	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Hrob	Rat	DNA synthesis involved in DNA repair	involved_in	ISO	RGD:1602101	1624291	PMID:31467087	RGD	PMID:31467087
Hrob	Rat	DNA synthesis involved in DNA repair	involved_in	IEA	UniProtKB:Q8N3J3\|ensembl:ENSP00000466618	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hrob	Rat	female gamete generation	involved_in	IEA	UniProtKB:Q32P12\|ensembl:ENSMUSP00000097961	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hrob	Rat	female gamete generation	involved_in	ISO	RGD:1622992	1624291	PMID:31467087	RGD	PMID:31467087
Hrob	Rat	female gamete generation	involved_in	ISS	UniProtKB:Q32P12	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Hrob	Rat	interstrand cross-link repair	involved_in	ISS	UniProtKB:Q8N3J3	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Hrob	Rat	interstrand cross-link repair	involved_in	IEA	UniProtKB:Q8N3J3\|ensembl:ENSP00000466618	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hrob	Rat	interstrand cross-link repair	involved_in	ISO	RGD:1602101	1624291	PMID:31467087	RGD	PMID:31467087
Hrob	Rat	male gamete generation	involved_in	IEA	UniProtKB:Q32P12\|ensembl:ENSMUSP00000097961	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hrob	Rat	male gamete generation	involved_in	ISO	RGD:1622992	1624291	PMID:31467087	RGD	PMID:31467087
Hrob	Rat	male gamete generation	involved_in	ISS	UniProtKB:Q32P12	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Hrob	Rat	recombinational repair	involved_in	IEA	InterPro:IPR028045	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hrob	Rat	chromosome	located_in	IEA	UniProtKB-KW:KW-0158	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Hrob	Rat	chromosome	located_in	IEA	UniProtKB-SubCell:SL-0468	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Hrob	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Hrob	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Hrob	Rat	site of DNA damage	located_in	ISO	RGD:1602101	1624291	PMID:31467087	RGD	PMID:31467087
Hrob	Rat	site of DNA damage	located_in	IEA	UniProtKB:Q8N3J3\|ensembl:ENSP00000466618	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hrob	Rat	site of DNA damage	located_in	ISS	UniProtKB:Q8N3J3	1600115	GO_REF:0000024	UniProt	GO_REF:0000024

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hrob	Rat	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Hrob	Rat	protein binding	enables	ISO	RGD:1602101	1624291	UniProtKB:Q9UJA3 PMID:31467087	RGD	PMID:31467087
Hrob	Rat	protein binding	enables	ISO	RGD:1602101,UniProtKB:Q8N3J3-3	1624291	UniProtKB:Q9UPY8 PMID:32296183	RGD	PMID:32296183
Hrob	Rat	single-stranded DNA binding	enables	ISS	UniProtKB:Q32P12	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Hrob	Rat	single-stranded DNA binding	enables	ISO	RGD:1622992	1624291	PMID:31467087	RGD	PMID:31467087
Hrob	Rat	single-stranded DNA binding	enables	IEA	UniProtKB:Q32P12\|ensembl:ENSMUSP00000097961	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:16288221	PMID:31467087

Hrob
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	87,705,846 - 87,722,635 (+)	NCBI		GRCr8
mRatBN7.2	10	87,206,017 - 87,222,483 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	87,206,049 - 87,222,483 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	92,235,757 - 92,252,069 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	91,707,723 - 91,724,057 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	87,101,040 - 87,117,376 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	90,192,608 - 90,214,486 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	90,192,627 - 90,214,486 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	89,978,419 - 90,001,064 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	91,329,706 - 91,347,594 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	91,344,075 - 91,361,964 (+)	NCBI
Celera	10	85,922,100 - 85,938,261 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

HROB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	44,141,930 - 44,162,476 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	44,141,906 - 44,162,476 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	42,219,298 - 42,239,844 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	39,574,852 - 39,595,369 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	38,927,986 - 38,948,557 (+)	NCBI		Celera
Cytogenetic Map	17	q21.31	NCBI
HuRef	17	37,983,300 - 38,003,871 (+)	NCBI		HuRef
CHM1_1	17	42,454,660 - 42,475,226 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	44,995,027 - 45,015,576 (+)	NCBI		T2T-CHM13v2.0

Hrob
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	102,139,677 - 102,156,009 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	102,139,708 - 102,156,013 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	102,248,857 - 102,265,183 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	102,248,882 - 102,265,187 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	102,110,196 - 102,126,497 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	102,064,975 - 102,081,268 (+)	NCBI		MGSCv36	mm8
Celera	11	113,955,724 - 113,972,051 (+)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	66.21	NCBI

Hrob
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	17,256,593 - 17,264,872 (+)	NCBI	ChiLan1.0	ChiLan1.0

HROB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	20,744,231 - 20,767,556 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	22,708,577 - 22,731,897 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	13,233,464 - 13,254,726 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	13,395,473 - 13,415,346 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	13,395,473 - 13,409,505 (-)	Ensembl	panpan1.1		panPan2

HROB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	19,230,345 - 19,245,518 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	19,230,399 - 19,245,624 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	18,621,143 - 18,636,309 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	19,926,089 - 19,941,286 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	19,926,137 - 19,941,347 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	18,779,466 - 18,794,637 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	18,962,526 - 18,977,694 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	19,107,482 - 19,122,654 (-)	NCBI		UU_Cfam_GSD_1.0

Hrob
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	18,559,665 - 18,575,134 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	620,754 - 633,499 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	619,120 - 633,590 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HROB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	19,044,043 - 19,077,829 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	19,044,569 - 19,077,877 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	19,338,655 - 19,344,491 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HROB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	62,230,588 - 62,251,090 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	62,230,261 - 62,250,734 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	32,998,346 - 33,023,368 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hrob
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624795	799,533 - 806,876 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Hrob
57 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	106
Count of miRNA genes:	85
Interacting mature miRNAs:	93
Transcripts:	ENSRNOT00000065182
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
631555	Bp134	Blood pressure QTL 134		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	80515287	91230079	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
4889948	Bss91	Bone structure and strength QTL 91	4		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	10	82564856	92369470	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	74372084	94965338	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	78775516	98279596	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	94965338	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	64890616	107211142	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	80515287	101325465	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	72552416	93995749	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	84022321	93995963	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	78899655	87307728	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
12880055	Am11	Aortic mass QTL 11		0.004	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	84007272	95933025	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2301398	Kidm38	Kidney mass QTL 38		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	84007272	95933025	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	85565469	103884409	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat

RH137587

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	87,222,067 - 87,222,194 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	90,214,071 - 90,214,197	NCBI	Rnor6.0
Rnor_5.0	10	90,000,649 - 90,000,775	UniSTS	Rnor5.0
RGSC_v3.4	10	91,347,179 - 91,347,305	UniSTS	RGSC3.4
Celera	10	85,937,846 - 85,937,972	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	9	49	104	91	90	59	25	59	6	216	97	84	45	60	31


RefSeq Transcripts	NM_001017988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC134158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY623029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY623030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE114522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065182 ⟹ ENSRNOP00000063602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	87,206,049 - 87,222,483 (+)	Ensembl
Rnor_6.0 Ensembl	10	90,192,629 - 90,214,486 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080965 ⟹ ENSRNOP00000075073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	87,206,056 - 87,222,477 (+)	Ensembl
Rnor_6.0 Ensembl	10	90,192,627 - 90,214,397 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103088 ⟹ ENSRNOP00000086283

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	87,206,056 - 87,222,477 (+)	Ensembl

RefSeq Acc Id:

NM_001017988 ⟹ NP_001017988

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	87,706,204 - 87,722,635 (+)	NCBI
mRatBN7.2	10	87,206,049 - 87,222,483 (+)	NCBI
Rnor_6.0	10	90,192,629 - 90,214,486 (+)	NCBI
Rnor_5.0	10	89,978,419 - 90,001,064 (+)	NCBI
RGSC_v3.4	10	91,329,706 - 91,347,594 (+)	RGD
Celera	10	85,922,100 - 85,938,261 (+)	RGD

Sequence:

show sequence

AGCTACTGTTATGGCGGCGGCTTCGAAAGTCGCTTTGGGCGCACATTCTTAGGCGACCCTCTCTCAGCTTCCGCTGCGGTCTTAAAGACGCTTCTCTCTGACGCTGCTCTGGGGATACTGTCTGGCAC
AGTTCCCCACTTTACATCAGGGTCGAGTTGGAGGTGAACCCCTCGAGTCTGATACGGCCGGGCCAATCCACCGGCCGAGCCACGGACTGTCGTCATGGATTTCTTATCTGCTTTGGAGAATGCAGAGA
ACCACATTGTTAGTGCACTGCCCGGGGATGCCGTGTGCCTGAGACCCAACTCTTCCAGACCACAGGAGACTCCGCAGGCACACTCCTCAAAACTGTCGCCATCATACCCTGCCTCCAACCGGTCAGTC
CTAGGACTGTGTTTCCCTACTTCCCGCATGCCAGAGACCATCAAGGAGCCACCCTGCAAAGGAGCCATGTTCCTGAGACCTGTGTCAATTTCCAGCAGCAGCTCAGGCAGTCAGCAAAGAATGACAGG
AACAAAAGTGTCCCAGGAGTCATCAGGACGTCAGTCCTCGGCCGCACACTCTGGATTTATCTTTGAGAGCTGTCAACATGGCATTGGTGACTTCGAAACACTTGATCAAGATGAGTTTGACAAGGCCC
TGGCGAGCATGGAGTTCGAGGGAGCTGGCTTGGAGCCAGAAGTTAACCGTGGAGCCTCCCAGATCCTGCCTGCCAAGCACTGTGAGGATCCCGTATTGGCGAAAAAGGCCCGAGTAGCTGATCTGAGT
GGATCTTTCCAGGAGGGGCCCATCGTCCACTGTAGAAAGCCATGGCCTTCCTTAAGACCGACTACAGCCACAGGAGGCCTTCCTGTCCCAGCTACATCAGATATTTCCACTTCCCATCAAAGGGGCTC
CCCCGTTCCTGCACCTCAGTATTCACCAGTAGCTGGAAGGACCCTCCAAAACGGCCCACAGAACTATGTGCCTGGTCAGCCACTTCAGTCTCCCAGAGCTTGGTCAAGTGGCAAACCCCGTTTTTCTG
GACCTCAATGTCCCCACAGCAGCTCTGCAGCATTTTGTCGGGGGCCCTCGCCATCCCGAGCCCCAGTGTCTTCTGTTGAATCTCCTTTCAGCACCCCCAGAAGTACTTCCACCACAGTTACTCAGCCA
GCTCTTCAGACACCAGTAGTCACCAACCACCTGGTACAGCTTGTCACCGCTACCAACCGGACTCCCCAGCAGCCCTCCCGCCCCTCCATTCGAGCTAAAACCCGCCGCTTTCCTGGCCCAGCAGGACT
TCTGCCTCATCAACACAGCGGGGAGAATCTGGAGGAGATCATGGTTTCCACACCCCAGACTCCGACTCACGGTGCTCTGGCTAAATTCCAGACTGAGATTGTTACCAGTTCCCAGGGATCAGTGGAAG
AAGACTTTGGGCGAGGGCCCTGGCTCACCATGAAATCTGCTCTGGGCCTGGATGAGGGAGACCCCACCTGCTTTCTCTATACCTACAGTATTGTCATGGTGCTACGCAAGGCAGCCCTCAAACAGCTC
CCCAGGAACAAGGTCCCCAACATGGCAGTGATGATCAAGTCCCTGACCCGGAGCACAATGGACGCCAGTGTGGTTTTTAAGGACCCCACAGGAGAGATGCTTGGAACAGTGCACAGAGTGCTTTTGGA
GACACACCAGAATGAGCTGAAGCCTGGCTCCGTGCTGTTGCTGAAGCAGATTGGAGTGTTTTCTCCTTCCCTCAGAAACCACTACCTGAATGTGACACCCAACAACCTGGTCCACATTTACAGTCTAG
ATTCTGGGGATGGGGACTTCCTCAAGCCACCTCAGCCTTTGCCCAAGGATCTGGGAAACTCCCATGGCAGCCTCCAGCCTGATGTGGCTGCAGAACCCACACAGGGCCTCAGAACAGCACAGAACCCA
CCGGCGTCTCCCGAAGAAGAGCTCCCAGAGGCAGATGACCTGGATGGACTCCTGAGTGAGCTCCCCGAGGACTTCTTCTGTGAGCCCAGCGGCTGGAGCTGTCTCAAGACAGGGCACCCACCATGAGC
TGGCAGCCTCTGCCCCCACACAAGCTCTTGGTGCATCTGGTCACATCCAAGGGAGAGAGACAGTGTAGCTGGGGACGATTCAAGCCCATGGTCTGACGCCTCCCCATGGCCACCTTGGAATGCTCGGT
GACAGCCAGACAGTGCGCTGTGTGTCTTGACTACTTCCTCTGGCATGGGCATCCTGGAAACCTGAGCAAGCCTCGCTCCCCATCATCCTTGTCCCTGTCACATCATCCTCTGGCCAATAAGAAAAGCA
GGATCCTCCCACCCCGTCTTAACTTTAGAGAGGTTGGGCCTGATTTCCTTGTCCCATTGTTCCTCAATACCTTGACAGCTGAGGAGCCCAAAGGAGCTACAAGCACATCAGAGGCCTAATGGACCTAA
CTGGTGCACAAGGGTGACTGTGAGGTGCAGGCTACTGTGCTTGGTTCTGAAATAAAGCATCCCTTCCTCACCTGCCACCTTGCGTCCCACACCTCCTCCTCTTCCGCTGCTACCCTCTCATCCCCTCC
TGACCAGGGCAGCCAAGCAGGTGGACCAGGAGGCAGAGCAAGCAGCATTCACGAGAGAAAGAGAGAGACAGAGAGAGAGAGAGCGCACATGTTTATAAACTTTTTCCTCCCTTTCTCCTCCAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006247329 ⟹ XP_006247391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	87,705,846 - 87,722,635 (+)	NCBI
mRatBN7.2	10	87,206,019 - 87,222,483 (+)	NCBI
Rnor_6.0	10	90,192,608 - 90,214,486 (+)	NCBI
Rnor_5.0	10	89,978,419 - 90,001,064 (+)	NCBI

Sequence:

show sequence

GCCTTCCCTTTAAGAGGGCGGAGCTACTGTTATGGCGGCGGCTTCGAAAGTCGCTTTGGGCGCA
CATTCTTAGGCGACCCTCTCTCAGCTTCCGCTGCGGTCTTAAAGACGCTTCTCTCTGACGCTGCTCTGGGGATACTGTCTGGCACAGTTCCCCACTTTACATCAGGGTCGAGTTGGAGGTGAACCCCT
CGAGTCTGATACGGCCGGGCCAATCCACCGGCCGAGCCACGGACTGTCGTCATGACGTGTGGTTTTCAGAAGTTGTTTTCTGTGGAAGAGGACTTTGAAGATGAGGATTTCTTATCTGCTTTGGAGAA
TGCAGAGAACCACATTGTTAGTGCACTGCCCGGGGATGCCGTGTGCCTGAGACCCAACTCTTCCAGACCACAGGAGACTCCGCAGGCACACTCCTCAAAACTGTCGCCATCATACCCTGCCTCCAACC
GGTCAGTCCTAGGACTGTGTTTCCCTACTTCCCGCATGCCAGAGACCATCAAGGAGCCACCCTGCAAAGGAGCCATGTTCCTGAGACCTGTGTCAATTTCCAGCAGCAGCTCAGGCAGTCAGCAAAGA
ATGACAGGAACAAAAGTGTCCCAGGAGTCATCAGGACGTCAGTCCTCGGCCGCACACTCTGGATTTATCTTTGAGAGCTGTCAACATGGCATTGGTGACTTCGAAACACTTGATCAAGATGAGTTTGA
CAAGGCCCTGGCGAGCATGGAGTTCGAGGGAGCTGGCTTGGAGCCAGAAGTTAACCGTGGAGCCTCCCAGATCCTGCCTGCCAAGCACTGTGAGGATCCCGTATTGGCGAAAAAGGCCCGAGTAGCTG
ATCTGAGTGGATCTTTCCAGGAGGGGCCCATCGTCCACTGTAGAAAGCCATGGCCTTCCTTAAGACCGACTACAGCCACAGGAGGCCTTCCTGTCCCAGCTACATCAGATATTTCCACTTCCCATCAA
AGGGGCTCCCCCGTTCCTGCACCTCAGTATTCACCAGTAGCTGGAAGGACCCTCCAAAACGGCCCACAGAACTATGTGCCTGGTCAGCCACTTCAGTCTCCCAGAGCTTGGTCAAGTGGCAAACCCCG
TTTTTCTGGACCTCAATGTCCCCACAGCAGCTCTGCAGCATTTTGTCGGGGGCCCTCGCCATCCCGAGCCCCAGTGTCTTCTGTTGAATCTCCTTTCAGCACCCCCAGAAGTACTTCCACCACAGTTA
CTCAGCCAGCTCTTCAGACACCAGTAGTCACCAACCACCTGGTACAGCTTGTCACCGCTACCAACCGGACTCCCCAGCAGCCCTCCCGCCCCTCCATTCGAGCTAAAACCCGCCGCTTTCCTGGCCCA
GCAGGACTTCTGCCTCATCAACACAGCGGGGAGAATCTGGAGGAGATCATGGTTTCCACACCCCAGACTCCGACTCACGGTGCTCTGGCTAAATTCCAGACTGAGATTGTTACCAGTTCCCAGGGATC
AGTGGAAGAAGACTTTGGGCGAGGGCCCTGGCTCACCATGAAATCTGCTCTGGGCCTGGATGAGGGAGACCCCACCTGCTTTCTCTATACCTACAGTATTGTCATGGTGCTACGCAAGGCAGCCCTCA
AACAGCTCCCCAGGAACAAGGTCCCCAACATGGCAGTGATGATCAAGTCCCTGACCCGGAGCACAATGGACGCCAGTGTGGTTTTTAAGGACCCCACAGGAGAGATGCTTGGAACAGTGCACAGAGTG
CTTTTGGAGACACACCAGAATGAGCTGAAGCCTGGCTCCGTGCTGTTGCTGAAGCAGATTGGAGTGTTTTCTCCTTCCCTCAGAAACCACTACCTGAATGTGACACCCAACAACCTGGTCCACATTTA
CAGTCTAGATTCTGGGGATGGGGACTTCCTCAAGCCACCTCAGCCTTTGCCCAAGGATCTGGGAAACTCCCATGGCAGCCTCCAGCCTGATGTGGCTGCAGAACCCACACAGGGCCTCAGAACAGCAC
AGAACCCACCGGCGTCTCCCGAAGAAGAGCTCCCAGAGGCAGATGACCTGGATGGACTCCTGAGTGAGCTCCCCGAGGACTTCTTCTGTGAGCCCAGCGGCTGGAGCTGTCTCAAGACAGGGCACCCA
CCATGAGCTGGCAGCCTCTGCCCCCACACAAGCTCTTGGTGCATCTGGTCACATCCAAGGGAGAGAGACAGTGTAGCTGGGAACGATTCAAGCCCATGGTCTGACGCCTCCCCATGGCCACCTTGGAA
TGCTCGGTGACAGCCAGACAGTGCGCTGTGTGTCTTGACTACTTCCTCTGGCATGGGCATCCTGGAAACCTGAGCAAGCCTCGCTCCCCATCATCCTTGTCCCTGTCACATCATCCTCTGGCCAATAA
GAAAAGCAGGATCCTCCCACCCCGTCTTAACTTTAGAGAGGTTGGGCCTGATTTCCTTGTCCCATTGTTCCTCAATACCTTGACAGCTGAGGAGCCCAAAGGAGCTACAAGCACATCAGAGGCCTAAT
GGACCTAACTGGTGCACAAGGGTGACTGTGAGGTGCAGGCTACTGTGCTTGGTTCTGAAATAAAGCATCCCTTCCTCACCTGCCACCCTGCGTCCCACACCTCCTCCTCTTCCGCTGCTACCCTCTCA
TCCCCTCCTGACCAGGGCAGCCAAGCAGGTGGACCAGGAGGCAGAGCAAGCAGCATTCACGAGAGAAAGAGAGAGACAGAGAGAGAGAGAGCGCACATGTTTATAAACTTTTTCCTCCCTTTCTCCTC
C

hide sequence

RefSeq Acc Id:

XM_039086108 ⟹ XP_038942036

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	87,706,185 - 87,722,635 (+)	NCBI
mRatBN7.2	10	87,206,019 - 87,222,483 (+)	NCBI

RefSeq Acc Id:

XM_039086109 ⟹ XP_038942037

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	87,706,185 - 87,722,635 (+)	NCBI
mRatBN7.2	10	87,206,019 - 87,222,483 (+)	NCBI

RefSeq Acc Id:

XM_039086110 ⟹ XP_038942038

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	87,706,536 - 87,722,635 (+)	NCBI
mRatBN7.2	10	87,206,387 - 87,222,483 (+)	NCBI

RefSeq Acc Id:

XM_039086111 ⟹ XP_038942039

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	87,706,183 - 87,716,673 (+)	NCBI
mRatBN7.2	10	87,206,017 - 87,216,221 (+)	NCBI

RefSeq Acc Id:

XM_039086112 ⟹ XP_038942040

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	87,712,635 - 87,722,635 (+)	NCBI
mRatBN7.2	10	87,212,488 - 87,222,483 (+)	NCBI

RefSeq Acc Id:

XM_063269157 ⟹ XP_063125227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	87,706,182 - 87,716,673 (+)	NCBI


Protein RefSeqs	NP_001017988	(Get FASTA)	NCBI Sequence Viewer
	XP_006247391	(Get FASTA)	NCBI Sequence Viewer
	XP_038942036	(Get FASTA)	NCBI Sequence Viewer
	XP_038942037	(Get FASTA)	NCBI Sequence Viewer
	XP_038942038	(Get FASTA)	NCBI Sequence Viewer
	XP_038942039	(Get FASTA)	NCBI Sequence Viewer
	XP_038942040	(Get FASTA)	NCBI Sequence Viewer
	XP_063125227	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAT46046	(Get FASTA)	NCBI Sequence Viewer
	AAT46047	(Get FASTA)	NCBI Sequence Viewer
	EDM06180	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063602
	ENSRNOP00000063602.1
	ENSRNOP00000075073
	ENSRNOP00000086283
	ENSRNOP00000107729
GenBank Protein	Q6GX86	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001017988 ⟸ NM_001017988

- UniProtKB:

Q6GX87 (UniProtKB/Swiss-Prot), Q6GX86 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MDFLSALENAENHIVSALPGDAVCLRPNSSRPQETPQAHSSKLSPSYPASNRSVLGLCFPTSRMPETIKEPPCKGAMFLRPVSISSSSSGSQQRMTGTKVSQESSGRQSSAAHSGFIFESCQHGIGDF
ETLDQDEFDKALASMEFEGAGLEPEVNRGASQILPAKHCEDPVLAKKARVADLSGSFQEGPIVHCRKPWPSLRPTTATGGLPVPATSDISTSHQRGSPVPAPQYSPVAGRTLQNGPQNYVPGQPLQSP
RAWSSGKPRFSGPQCPHSSSAAFCRGPSPSRAPVSSVESPFSTPRSTSTTVTQPALQTPVVTNHLVQLVTATNRTPQQPSRPSIRAKTRRFPGPAGLLPHQHSGENLEEIMVSTPQTPTHGALAKFQT
EIVTSSQGSVEEDFGRGPWLTMKSALGLDEGDPTCFLYTYSIVMVLRKAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMLGTVHRVLLETHQNELKPGSVLLLKQIGVFSPSLRNHYLNV
TPNNLVHIYSLDSGDGDFLKPPQPLPKDLGNSHGSLQPDVAAEPTQGLRTAQNPPASPEEELPEADDLDGLLSELPEDFFCEPSGWSCLKTGHPP

hide sequence

RefSeq Acc Id:	XP_006247391 ⟸ XM_006247329
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K9P1 (UniProtKB/TrEMBL), A6HJH5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTCGFQKLFSVEEDFEDEDFLSALENAENHIVSALPGDAVCLRPNSSRPQETPQAHSSKLSPSYPASNRSVLGLCFPTSRMPETIKEPPCKGAMFLRPVSISSSSSGSQQRMTGTKVSQESSGRQSSA AHSGFIFESCQHGIGDFETLDQDEFDKALASMEFEGAGLEPEVNRGASQILPAKHCEDPVLAKKARVADLSGSFQEGPIVHCRKPWPSLRPTTATGGLPVPATSDISTSHQRGSPVPAPQYSPVAGRT LQNGPQNYVPGQPLQSPRAWSSGKPRFSGPQCPHSSSAAFCRGPSPSRAPVSSVESPFSTPRSTSTTVTQPALQTPVVTNHLVQLVTATNRTPQQPSRPSIRAKTRRFPGPAGLLPHQHSGENLEEIM VSTPQTPTHGALAKFQTEIVTSSQGSVEEDFGRGPWLTMKSALGLDEGDPTCFLYTYSIVMVLRKAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMLGTVHRVLLETHQNELKPGSVLLL KQIGVFSPSLRNHYLNVTPNNLVHIYSLDSGDGDFLKPPQPLPKDLGNSHGSLQPDVAAEPTQGLRTAQNPPASPEEELPEADDLDGLLSELPEDFFCEPSGWSCLKTGHPP hide sequence

Ensembl Acc Id:

ENSRNOP00000063602 ⟸ ENSRNOT00000065182

Ensembl Acc Id:

ENSRNOP00000075073 ⟸ ENSRNOT00000080965

RefSeq Acc Id:	XP_038942039 ⟸ XM_039086111
- Peptide Label:	isoform X5

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6GX86-F1-model_v2	AlphaFold	Q6GX86	1-607	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13697784

Promoter ID:

EPDNEW_R8303

Type:

multiple initiation site

Name:

LOC303566_1

Description:

E2F1-inducible gene

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	90,192,627 - 90,192,687	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-23116	BioCyc
Ensembl Genes	ENSRNOG00000020908	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000065182	ENTREZGENE
	ENSRNOT00000065182.2	UniProtKB/Swiss-Prot
	ENSRNOT00000080965	ENTREZGENE
	ENSRNOT00000103088	ENTREZGENE
	ENSRNOT00000167474	ENTREZGENE
InterPro	DUF4539	UniProtKB/Swiss-Prot
KEGG Report	rno:303566	UniProtKB/Swiss-Prot
NCBI Gene	303566	ENTREZGENE
PANTHER	HOMOLOGOUS RECOMBINATION OB-FOLD PROTEIN	UniProtKB/Swiss-Prot
	PTHR14523	UniProtKB/Swiss-Prot
Pfam	DUF4539	UniProtKB/Swiss-Prot
PhenoGen	Hrob	PhenoGen
RatGTEx	ENSRNOG00000020908	RatGTEx
UniProt	A0A0G2K9P1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A3H9	ENTREZGENE, UniProtKB/TrEMBL
	A6HJH5	ENTREZGENE, UniProtKB/TrEMBL
	CQ053_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q6GX87	ENTREZGENE
UniProt Secondary	Q6GX87	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-09-13	Hrob	homologous recombination factor with OB-fold	LOC303566	E2F1-inducible gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2007-09-21	LOC303566	E2F1-inducible gene	Asb16	ankyrin repeat and SOCS box-containing 16	Symbol and Name updated	1299863	APPROVED
2005-12-06	Asb16	ankyrin repeat and SOCS box-containing 16	Asb16_predicted	ankyrin repeat and SOCS box-containing 16 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Asb16_predicted	ankyrin repeat and SOCS box-containing 16 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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