Symbol:
Gdnf
Name:
glial cell derived neurotrophic factor
RGD ID:
8744389
Description:
ENCODES a protein that exhibits glial cell-derived neurotrophic factor receptor binding (ortholog); growth factor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); cellular response to dexamethasone stimulus (ortholog); commissural neuron axon guidance (ortholog); ASSOCIATED WITH acoustic neuroma (ortholog); alcohol dependence (ortholog); alcohol use disorder (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog); Golgi apparatus (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
glial cell line-derived neurotrophic factor
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955426 22,386,450 - 22,412,324 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955426 22,386,613 - 22,412,324 (-) NCBI ChiLan1.0 ChiLan1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Gdnf Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955426 22,386,450 - 22,412,324 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955426 22,386,613 - 22,412,324 (-) NCBI ChiLan1.0 ChiLan1.0
GDNF Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 5 37,812,677 - 37,840,041 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 5 37,812,677 - 37,840,041 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 5 37,812,779 - 37,840,143 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 5 37,851,510 - 37,875,539 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 5 37,851,509 - 37,870,655 NCBI Celera 5 37,699,155 - 37,726,173 (-) NCBI Celera Cytogenetic Map 5 p13.2 NCBI HuRef 5 37,765,313 - 37,792,316 (-) NCBI HuRef CHM1_1 5 37,814,804 - 37,841,806 (-) NCBI CHM1_1 T2T-CHM13v2.0 5 38,061,739 - 38,089,107 (-) NCBI T2T-CHM13v2.0
Gdnf Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 15 7,839,529 - 7,867,061 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 15 7,840,327 - 7,867,056 (+) Ensembl GRCm39 Ensembl GRCm38 15 7,810,048 - 7,837,580 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 15 7,810,846 - 7,837,575 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 15 7,761,011 - 7,787,575 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 15 7,758,226 - 7,784,790 (+) NCBI MGSCv36 mm8 Celera 15 7,656,819 - 7,683,345 (+) NCBI Celera Cytogenetic Map 15 A1 NCBI cM Map 15 3.8 NCBI
Gdnf Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 58,621,327 - 58,647,242 (+) NCBI GRCr8 mRatBN7.2 2 56,894,022 - 56,919,935 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 56,895,010 - 56,917,209 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 2 63,981,903 - 64,007,772 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 62,069,964 - 62,095,814 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 57,071,144 - 57,096,990 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 56,884,181 - 56,912,964 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 56,887,987 - 56,910,238 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 76,896,991 - 76,922,471 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 57,399,312 - 57,424,030 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 57,327,544 - 57,352,263 (+) NCBI Celera 2 52,510,468 - 52,532,694 (+) NCBI Celera Cytogenetic Map 2 q16 NCBI
GDNF Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 4 72,503,313 - 72,530,699 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 5 70,643,011 - 70,684,335 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 5 72,539,374 - 72,566,918 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 5 77,573,466 - 77,600,478 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 5 77,577,313 - 77,601,362 (+) Ensembl panpan1.1 panPan2
GDNF Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 4 70,966,694 - 70,991,860 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 4 70,971,432 - 70,989,714 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 ROS_Cfam_1.0 4 71,483,108 - 71,516,105 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 4 71,487,859 - 71,508,270 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 4 71,230,252 - 71,263,217 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 4 71,343,690 - 71,376,610 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 4 71,882,215 - 71,915,204 (+) NCBI UU_Cfam_GSD_1.0
Gdnf Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024407213 227,058,585 - 227,083,871 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936518 4,288,154 - 4,310,753 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936518 4,291,391 - 4,310,752 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
GDNF Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 16 22,936,604 - 22,966,536 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 16 22,936,602 - 22,965,929 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 16 24,176,604 - 24,179,641 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
GDNF Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 4 36,662,033 - 36,691,761 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 4 36,665,009 - 36,684,257 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666071 27,015,956 - 27,043,442 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Gdnf
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCLAT00000020594 ⟹ ENSCLAP00000020397
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955426 22,386,450 - 22,412,324 (-) Ensembl
RefSeq Acc Id:
XM_005386218 ⟹ XP_005386275
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955426 22,386,613 - 22,409,865 (-) NCBI
Sequence:
AGCACATTAAACTATTCGCGCGTGTAGCAAGGGCGAGGGTTATGTGGAAAACACGTCCGGCAAACGCAGATGTGTTTTAGGAACACGACAGAGAGACGAACGGGGAAGCCTCGGGTTGGAGCCCAGAC
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RefSeq Acc Id:
XM_005386219 ⟹ XP_005386276
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955426 22,386,613 - 22,409,865 (-) NCBI
Sequence:
AGCACATTAAACTATTCGCGCGTGTAGCAAGGGCGAGGGTTATGTGGAAAACACGTCCGGCAAA
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RefSeq Acc Id:
XM_005386220 ⟹ XP_005386277
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955426 22,386,613 - 22,391,203 (-) NCBI
Sequence:
TAATTTTCCTCTTACTCAGTTGGCGAAATACTGCACCAAATGCTGAAATACCCAGAAGACATCA
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RefSeq Acc Id:
XM_005386221 ⟹ XP_005386278
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955426 22,386,613 - 22,412,324 (-) NCBI
Sequence:
GCTGCGCCCGGGACCCGCGCAGCCTCAGCCCAGAGCGCGGCGCGCGCAGCCCTGTCACCCCTCG
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RefSeq Acc Id:
XM_005386222 ⟹ XP_005386279
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955426 22,386,613 - 22,407,196 (-) NCBI
Sequence:
CCCGCCGGTAAGAGGCCTCCCGAGGCGCCCGCCGAAGACCGCTCCCTCGGCCGCCGCCGCGCGC
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RefSeq Acc Id:
XM_005386223 ⟹ XP_005386280
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955426 22,386,613 - 22,412,324 (-) NCBI
Sequence:
GCTGCGCCCGGGACCCGCGCAGCCTCAGCCCAGAGCGCGGCGCGCGCAGCCCTGTCACCCCTCGCTCGAGGCAGGGGCGGCCGCTCGGACTTCGGCTCCTGGGGGTGCGGGAGGCCGGCGGGGGAGGC
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RefSeq Acc Id:
XM_013514924 ⟹ XP_013370378
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955426 22,386,613 - 22,407,232 (-) NCBI
Sequence:
CTGGTGCTGCTCCACACCGCGTCCGCCTTCCCGCTGCCCGCCGGAAGACTCAATAGATCCTAGA
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RefSeq Acc Id:
XP_005386280 ⟸ XM_005386223
- Peptide Label:
isoform X5
- UniProtKB:
A0A8C2VVS0 (UniProtKB/TrEMBL)
- Sequence:
MKLWDVVAVCLVLLHTASAFPLPAGKRPPEAPAEDRSLGRRRAPLALSSDSNMPEDYPDQFDDVMDFIQATIRRLKRSPDKQIAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVT
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RefSeq Acc Id:
XP_005386278 ⟸ XM_005386221
- Peptide Label:
isoform X6
- Sequence:
MKLWDVVAVCLVLLHTASAFPLPAANMPEDYPDQFDDVMDFIQATIRRLKRSPDKQIAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAET
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RefSeq Acc Id:
XP_005386276 ⟸ XM_005386219
- Peptide Label:
isoform X2
- Sequence:
MCFRNTTERRTGKPRVGAQTDSGQRPRKPRRARSPQTPAPVCCLHRPGAAAGRDSKMKLWDVVA
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RefSeq Acc Id:
XP_005386275 ⟸ XM_005386218
- Peptide Label:
isoform X1
- Sequence:
MCFRNTTERRTGKPRVGAQTDSGQRPRKPRRARSPQTPAPVCCLHRPGAAAGRDSKMKLWDVVA
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RefSeq Acc Id:
XP_005386279 ⟸ XM_005386222
- Peptide Label:
isoform X4
- Sequence:
MPEDYPDQFDDVMDFIQATIRRLKRSPDKQIAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETMYDKILKNLSRSRRLVSDKVGQACCR
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RefSeq Acc Id:
XP_005386277 ⟸ XM_005386220
- Peptide Label:
isoform X3
- Sequence:
MLKYPEDIKRLQVHTALIGGLTPGSVLSFFPMGPPEVYISHLICCVTAYIRDRASPRANMPEDY
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RefSeq Acc Id:
XP_013370378 ⟸ XM_013514924
- Peptide Label:
isoform X4
- Sequence:
MPEDYPDQFDDVMDFIQATIRRLKRSPDKQIAVLPRRERNRQAAAANPENSRGKGRRGQRGKNR
hide sequence
Ensembl Acc Id:
ENSCLAP00000020397 ⟸ ENSCLAT00000020594
