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Gene: Cox6a1 (cytochrome c oxidase subunit 6A1) Rattus norvegicus
Symbol: Cox6a1
Name: cytochrome c oxidase subunit 6A1
Description: Predicted to contribute to cytochrome-c oxidase activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to localize to mitochondrial respiratory chain complex IV. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease recessive intermediate D. Orthologous to human COX6A1 (cytochrome c oxidase subunit 6A1); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: COX6AL; cytochrome c oxidase polypeptide VIa-liver; cytochrome c oxidase subunit 6A1, mitochondrial; Cytochrome c oxidase subunit VIa (liver); cytochrome c oxidase, subunit VIa, polypeptide 1
Homo sapiens (human) : COX6A1 (cytochrome c oxidase subunit 6A1)  HGNC  Alliance
Mus musculus (house mouse) : Cox6a1 (cytochrome c oxidase subunit 6A1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : LOC102012060 (cytochrome c oxidase subunit 6A1, mitochondrial)
Pan paniscus (bonobo/pygmy chimpanzee) : LOC103783978 (cytochrome c oxidase subunit 6A1, mitochondrial)
Canis lupus familiaris (dog) : LOC477508 (cytochrome c oxidase subunit 6A1, mitochondrial)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : LOC101954852 (cytochrome c oxidase subunit 6A1, mitochondrial)
Sus scrofa (pig) : COX6A1 (cytochrome c oxidase subunit 6A1)
Chlorocebus sabaeus (African green monkey) : COX6A1 (cytochrome c oxidase subunit 6A1)
Heterocephalus glaber (naked mole-rat) : LOC101698437 (cytochrome c oxidase subunit 6A1, mitochondrial)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.01247,024,442 - 47,027,495 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,024,442 - 47,027,495 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,817,758 - 48,820,811 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,530,091 - 42,533,144 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11242,393,577 - 42,396,520 (+)NCBI
Celera1242,883,040 - 42,886,093 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Cox6a1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 2384
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.