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Gene: Cox6a1 (cytochrome c oxidase subunit 6A1) Rattus norvegicus
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Symbol: Cox6a1
Name: cytochrome c oxidase subunit 6A1
Description: Predicted to contribute to cytochrome-c oxidase activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to localize to mitochondrial respiratory chain complex IV. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease recessive intermediate D. Orthologous to human COX6A1 (cytochrome c oxidase subunit 6A1); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: COX6AL; cytochrome c oxidase polypeptide VIa-liver; cytochrome c oxidase subunit 6A1, mitochondrial; Cytochrome c oxidase subunit VIa (liver); cytochrome c oxidase, subunit VIa, polypeptide 1
Orthologs:
Homo sapiens (human) : COX6A1 (cytochrome c oxidase subunit 6A1)  HGNC  Alliance
Mus musculus (house mouse) : Cox6a1 (cytochrome c oxidase subunit 6A1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : LOC102012060 (cytochrome c oxidase subunit 6A1, mitochondrial)
Pan paniscus (bonobo/pygmy chimpanzee) : LOC103783978 (cytochrome c oxidase subunit 6A1, mitochondrial)
Canis lupus familiaris (dog) : LOC477508 (cytochrome c oxidase subunit 6A1, mitochondrial)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : LOC101954852 (cytochrome c oxidase subunit 6A1, mitochondrial)
Sus scrofa (pig) : COX6A1 (cytochrome c oxidase subunit 6A1)
Chlorocebus sabaeus (African green monkey) : COX6A1 (cytochrome c oxidase subunit 6A1)
Heterocephalus glaber (naked mole-rat) : LOC101698437 (cytochrome c oxidase subunit 6A1, mitochondrial)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01247,024,442 - 47,027,495 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,024,442 - 47,027,495 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,817,758 - 48,820,811 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,530,091 - 42,533,144 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11242,393,577 - 42,396,520 (+)NCBI
Celera1242,883,040 - 42,886,093 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Cox6a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 2384
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2020-05-05
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.