NHERF1 (NHERF family PDZ scaffold protein 1) - Rat Genome Database

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Gene: NHERF1 (NHERF family PDZ scaffold protein 1) Chlorocebus sabaeus
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Symbol: NHERF1
Name: NHERF family PDZ scaffold protein 1
RGD ID: 18494745
Description: ENCODES a protein that exhibits gamma-aminobutyric acid transmembrane transporter activity (ortholog); molecular adaptor activity (ortholog); myosin II binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adenylate cyclase-activating dopamine receptor signaling pathway (ortholog); auditory receptor cell stereocilium organization (ortholog); PARTICIPATES IN eicosanoid signaling pathway; parathyroid hormone signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH chronic kidney disease (ortholog); genetic disease (ortholog); hypertension (ortholog); FOUND IN apical plasma membrane (ortholog); microvillus membrane (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Na(+)/H(+) exchange regulatory cofactor NHE-RF1; SLC9A3 regulator 1; SLC9A3R1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,889,454 - 46,910,776 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,888,942 - 46,910,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,675,824 - 17,696,157 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton organization  (IEA,ISO)
adenylate cyclase-activating dopamine receptor signaling pathway  (IEA,ISO)
auditory receptor cell stereocilium organization  (IEA,ISO)
bile acid secretion  (IEA)
cerebrospinal fluid circulation  (IEA,ISO)
cilium organization  (IEA)
establishment of epithelial cell apical/basal polarity  (IEA)
establishment of Golgi localization  (IEA)
establishment of localization in cell  (IEA,ISO)
fibroblast migration  (IEA,ISO)
gamma-aminobutyric acid import  (ISO)
gland morphogenesis  (IEA)
glutathione transport  (IEA)
import across plasma membrane  (ISO)
intracellular phosphate ion homeostasis  (IEA,ISO)
maintenance of epithelial cell apical/basal polarity  (IEA)
microvillus assembly  (IEA)
negative regulation of canonical Wnt signaling pathway  (IEA)
negative regulation of cell motility  (IEA)
negative regulation of cell population proliferation  (IEA)
negative regulation of ERK1 and ERK2 cascade  (IEA)
negative regulation of fibroblast migration  (IEA,ISO)
negative regulation of mitotic cell cycle  (IEA)
negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (IEA,ISO)
negative regulation of platelet-derived growth factor receptor signaling pathway  (IEA)
negative regulation of sodium ion transport  (IEA,ISO)
negative regulation of sodium:proton antiporter activity  (ISO)
nuclear migration  (IEA)
phospholipase C-activating dopamine receptor signaling pathway  (IEA,ISO)
plasma membrane organization  (IEA)
positive regulation of intrinsic apoptotic signaling pathway  (IEA)
positive regulation of monoatomic ion transmembrane transport  (ISO)
protein localization  (IEA,ISO)
protein localization to plasma membrane  (IEA)
regulation of cell shape  (IEA)
regulation of cell size  (IEA)
regulation of protein kinase activity  (ISO)
regulation of renal phosphate excretion  (IEA,ISO)
renal absorption  (IEA)
renal phosphate ion absorption  (IEA)
renal sodium ion transport  (IEA,ISO)
sensory perception of sound  (IEA,ISO)
sodium ion transport  (IEA,ISO)
Wnt signaling pathway  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NHERF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,889,454 - 46,910,776 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,888,942 - 46,910,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,675,824 - 17,696,157 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NHERF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,748,628 - 74,769,353 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,748,628 - 74,769,353 (+)EnsemblGRCh38hg38GRCh38
GRCh371772,744,767 - 72,765,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,256,373 - 70,277,089 (+)NCBINCBI36Build 36hg18NCBI36
Build 341770,256,378 - 70,277,089NCBI
Celera1769,337,944 - 69,358,679 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,155,124 - 68,175,866 (+)NCBIHuRef
CHM1_11772,809,571 - 72,830,338 (+)NCBICHM1_1
T2T-CHM13v2.01775,640,506 - 75,661,228 (+)NCBIT2T-CHM13v2.0
Nherf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,054,138 - 115,072,009 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,054,167 - 115,072,007 (+)EnsemblGRCm39 Ensembl
GRCm3811115,163,341 - 115,181,178 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,163,341 - 115,181,181 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,024,655 - 115,042,492 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,979,493 - 115,014,684 (+)NCBIMGSCv36mm8
Celera11126,928,560 - 126,946,416 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.65NCBI
Nherf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,902,165 - 100,919,265 (+)NCBIGRCr8
mRatBN7.210100,403,189 - 100,420,290 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,403,069 - 100,420,598 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,463,056 - 105,480,181 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,926,121 - 104,943,248 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,324,177 - 100,341,277 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,713,045 - 103,730,145 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,713,045 - 103,730,145 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,573,624 - 104,590,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,237,637 - 105,254,750 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,252,140 - 105,269,254 (+)NCBI
Celera1098,979,637 - 98,995,900 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Nherf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,639,267 - 1,656,850 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,639,267 - 1,656,850 (+)NCBIChiLan1.0ChiLan1.0
NHERF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,785,997 - 90,806,905 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,608,707 - 95,629,599 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,694,468 - 68,715,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,250,406 - 74,271,234 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,250,406 - 74,271,234 (+)Ensemblpanpan1.1panPan2
NHERF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,661,792 - 5,679,783 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,662,464 - 5,679,570 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,341,827 - 6,358,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,333,687 - 6,351,685 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,333,688 - 6,351,686 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,371,237 - 6,388,311 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,481,877 - 6,498,929 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,542,206 - 6,559,311 (-)NCBIUU_Cfam_GSD_1.0
Nherf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,275,339 - 6,292,156 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594119,770 - 136,789 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594119,808 - 136,620 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NHERF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,466,121 - 6,483,548 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,466,138 - 6,483,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,455,107 - 6,472,510 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Nherf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,612,849 - 4,630,451 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,612,890 - 4,630,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000002646   ⟹   ENSCSAP00000000945
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1646,888,942 - 46,910,842 (-)Ensembl
RefSeq Acc Id: XM_008011851   ⟹   XP_008010042
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11646,889,454 - 46,910,776 (-)NCBI
Vero_WHO_p1.0NW_02366607717,675,824 - 17,696,157 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008010042 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000945
  ENSCSAP00000000945.1
RefSeq Acc Id: XP_008010042   ⟸   XM_008011851
- UniProtKB: A0A0D9QX56 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000000945   ⟸   ENSCSAT00000002646


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004612 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002646.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro EBP50_C-term UniProtKB/TrEMBL
  NHER UniProtKB/TrEMBL
  NHERF-1/NHERF-2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
KEGG Report csab:103243077 UniProtKB/TrEMBL
NCBI Gene SLC9A3R1 ENTREZGENE
PANTHER PDZ DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR14191:SF7 UniProtKB/TrEMBL
Pfam EBP50_C UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PIRSF EBP50 UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/TrEMBL
UniProt A0A0D9QX56 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-03-29 NHERF1  NHERF family PDZ scaffold protein 1  SLC9A3R1  NHERF family PDZ scaffold protein 1  Symbol and/or name change 5135510 APPROVED
2022-11-01 SLC9A3R1  NHERF family PDZ scaffold protein 1  SLC9A3R1  SLC9A3 regulator 1  Symbol and/or name change 5135510 APPROVED