Nherf1 (NHERF family PDZ scaffold protein 1) - Rat Genome Database

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Gene: Nherf1 (NHERF family PDZ scaffold protein 1) Chinchilla lanigera
Analyze
Symbol: Nherf1 (Ensembl: SLC9A3R1)
Name: NHERF family PDZ scaffold protein 1 (Ensembl:SLC9A3 regulator 1)
RGD ID: 8868874
Description: ENCODES a protein that exhibits beta-2 adrenergic receptor binding (ortholog); beta-catenin binding (ortholog); channel activator activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adenylate cyclase-activating dopamine receptor signaling pathway (ortholog); auditory receptor cell stereocilium organization (ortholog); PARTICIPATES IN eicosanoid signaling pathway; parathyroid hormone signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH chronic kidney disease (ortholog); genetic disease (ortholog); hypertension (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); brush border membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Na(+)/H(+) exchange regulatory cofactor NHE-RF1; SLC9A3 regulator 1; Slc9a3r1; solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,639,267 - 1,656,850 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,639,267 - 1,656,850 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton organization  (ISO)
adenylate cyclase-activating dopamine receptor signaling pathway  (ISO)
auditory receptor cell stereocilium organization  (ISO)
bile acid secretion  (ISO)
cerebrospinal fluid circulation  (ISO)
cilium organization  (ISO)
establishment of epithelial cell apical/basal polarity  (ISO)
establishment of Golgi localization  (ISO)
establishment of localization in cell  (ISO)
fibroblast migration  (ISO)
gamma-aminobutyric acid import  (ISO)
gland morphogenesis  (ISO)
glutathione transport  (ISO)
import across plasma membrane  (ISO)
intracellular phosphate ion homeostasis  (ISO)
maintenance of epithelial cell apical/basal polarity  (ISO)
microvillus assembly  (ISO)
negative regulation of canonical Wnt signaling pathway  (ISO)
negative regulation of cell motility  (ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of ERK1 and ERK2 cascade  (ISO)
negative regulation of fibroblast migration  (ISO)
negative regulation of mitotic cell cycle  (ISO)
negative regulation of phosphatidylinositol 3-kinase signaling  (ISO)
negative regulation of platelet-derived growth factor receptor signaling pathway  (ISO)
negative regulation of protein kinase B signaling  (ISO)
negative regulation of sodium ion transport  (ISO)
negative regulation of sodium:proton antiporter activity  (ISO)
nuclear migration  (ISO)
phospholipase C-activating dopamine receptor signaling pathway  (ISO)
plasma membrane organization  (ISO)
positive regulation of intrinsic apoptotic signaling pathway  (ISO)
positive regulation of monoatomic ion transmembrane transport  (ISO)
protein localization  (ISO)
protein localization to plasma membrane  (ISO)
regulation of cell shape  (ISO)
regulation of cell size  (ISO)
regulation of protein kinase activity  (ISO)
regulation of renal phosphate excretion  (ISO)
renal absorption  (ISO)
renal phosphate ion absorption  (ISO)
renal sodium ion transport  (ISO)
sensory perception of sound  (ISO)
sodium ion transport  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data
Nherf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,639,267 - 1,656,850 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,639,267 - 1,656,850 (+)NCBIChiLan1.0ChiLan1.0
NHERF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,748,628 - 74,769,353 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1774,748,628 - 74,769,353 (+)EnsemblGRCh38hg38GRCh38
GRCh371772,744,767 - 72,765,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,256,373 - 70,277,089 (+)NCBINCBI36Build 36hg18NCBI36
Build 341770,256,378 - 70,277,089NCBI
Celera1769,337,944 - 69,358,679 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,155,124 - 68,175,866 (+)NCBIHuRef
CHM1_11772,809,571 - 72,830,338 (+)NCBICHM1_1
T2T-CHM13v2.01775,640,506 - 75,661,228 (+)NCBIT2T-CHM13v2.0
Nherf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,054,138 - 115,072,009 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,054,167 - 115,072,007 (+)EnsemblGRCm39 Ensembl
GRCm3811115,163,341 - 115,181,178 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,163,341 - 115,181,181 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,024,655 - 115,042,492 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,979,493 - 115,014,684 (+)NCBIMGSCv36mm8
Celera11126,928,560 - 126,946,416 (+)NCBICelera
Cytogenetic Map11E2NCBI
Nherf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210100,403,189 - 100,420,290 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,403,069 - 100,420,598 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,463,056 - 105,480,181 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.010104,926,121 - 104,943,248 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.010100,324,177 - 100,341,277 (+)NCBIRnor_WKY
Rnor_6.010103,713,045 - 103,730,145 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,713,045 - 103,730,145 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,573,624 - 104,590,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,237,637 - 105,254,750 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,252,140 - 105,269,254 (+)NCBI
Celera1098,979,637 - 98,995,900 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
NHERF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11795,608,707 - 95,629,599 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,694,468 - 68,715,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,250,406 - 74,271,234 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,250,406 - 74,271,234 (+)Ensemblpanpan1.1panPan2
NHERF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,661,792 - 5,679,783 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,662,464 - 5,679,570 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,341,827 - 6,358,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,333,687 - 6,351,685 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,333,688 - 6,351,686 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,371,237 - 6,388,311 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,481,877 - 6,498,929 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,542,206 - 6,559,311 (-)NCBIUU_Cfam_GSD_1.0
Nherf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,275,339 - 6,292,156 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594119,770 - 136,789 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936594119,808 - 136,620 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NHERF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,466,121 - 6,483,548 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,466,138 - 6,483,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,455,107 - 6,472,510 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NHERF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,889,454 - 46,910,776 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,888,942 - 46,910,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,675,824 - 17,696,157 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nherf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,612,849 - 4,630,451 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,612,890 - 4,630,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013300   ⟹   ENSCLAP00000013149
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555531,639,267 - 1,656,850 (+)Ensembl
RefSeq Acc Id: XM_005412251   ⟹   XP_005412308
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555531,639,267 - 1,656,850 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412308 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005412308   ⟸   XM_005412251
- UniProtKB: A0A8C2VGW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013149   ⟸   ENSCLAT00000013300
Protein Domains
PDZ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009078 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000013149 ENTREZGENE
  ENSCLAP00000013149.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013300 ENTREZGENE
  ENSCLAT00000013300.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro EBP50_C-term UniProtKB/TrEMBL
  NHERF-1/NHERF-2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
NCBI Gene Slc9a3r1 ENTREZGENE
PANTHER PDZ DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR14191:SF7 UniProtKB/TrEMBL
Pfam EBP50_C UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PIRSF EBP50 UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/TrEMBL
UniProt A0A8C2VGW4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-03-29 Nherf1  NHERF family PDZ scaffold protein 1  Slc9a3r1  NHERF family PDZ scaffold protein 1  Symbol and/or name change 5135510 APPROVED
2022-11-01 Slc9a3r1  NHERF family PDZ scaffold protein 1  Slc9a3r1  SLC9A3 regulator 1  Symbol and/or name change 5135510 APPROVED
2016-08-03 Slc9a3r1  SLC9A3 regulator 1    solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1  Symbol and/or name change 5135510 APPROVED