Brat1 (BRCA1-associated ATM activator 1) - Rat Genome Database

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Gene: Brat1 (BRCA1-associated ATM activator 1) Rattus norvegicus
Analyze
Symbol: Brat1
Name: BRCA1-associated ATM activator 1
RGD ID: 1565146
Description: Predicted to be involved in several processes, including positive regulation of cell growth; positive regulation of protein phosphorylation; and response to ionizing radiation. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be active in nucleus. Orthologous to human BRAT1 (BRCA1 associated ATM activator 1); INTERACTS WITH bisphenol A; dibutyl phthalate; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Brat1-ps1; BRCA1-associated ATM activator 1, pseudogene 1; LOC498150; RGD1565146; similar to hypothetical gene supported by AF226663
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,043,004 - 19,065,686 (-)NCBIGRCr8
mRatBN7.21213,928,889 - 13,951,760 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1213,928,898 - 13,941,248 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01216,016,062 - 16,028,534 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,015,771 - 16,027,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01218,013,619 - 18,036,360 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,400,221 - 14,411,251 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1215,689,050 - 15,701,522 (-)NCBICelera
Cytogenetic Map12q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16452482   PMID:19946888   PMID:22977523   PMID:25070371   PMID:25631046   PMID:25657994  


Genomics

Comparative Map Data
Brat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,043,004 - 19,065,686 (-)NCBIGRCr8
mRatBN7.21213,928,889 - 13,951,760 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1213,928,898 - 13,941,248 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01216,016,062 - 16,028,534 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,015,771 - 16,027,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01218,013,619 - 18,036,360 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,400,221 - 14,411,251 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1215,689,050 - 15,701,522 (-)NCBICelera
Cytogenetic Map12q11NCBI
BRAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3872,537,810 - 2,555,524 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl72,537,810 - 2,555,694 (-)EnsemblGRCh38hg38GRCh38
GRCh3772,577,444 - 2,595,158 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3672,544,037 - 2,561,672 (-)NCBINCBI36Build 36hg18NCBI36
Build 3472,350,755 - 2,368,387NCBI
Celera72,546,833 - 2,564,507 (-)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef72,496,221 - 2,514,225 (-)NCBIHuRef
CHM1_172,577,050 - 2,594,991 (-)NCBICHM1_1
T2T-CHM13v2.072,651,326 - 2,669,118 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v272,625,313 - 2,643,304 (-)NCBI
AA881470
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,688,222 - 140,705,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5140,690,766 - 140,705,134 (+)EnsemblGRCm39 Ensembl
GRCm385140,704,763 - 140,719,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,705,011 - 140,719,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv375141,180,977 - 141,195,288 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365140,957,497 - 140,971,808 (+)NCBIMGSCv36mm8
Celera5137,765,436 - 137,779,747 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map188.2NCBI
Brat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546012,662,779 - 12,673,287 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546012,662,005 - 12,674,223 (-)NCBIChiLan1.0ChiLan1.0
BRAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v267,494,073 - 7,512,923 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1755,818,774 - 55,837,638 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v072,797,551 - 2,815,847 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.172,892,302 - 2,910,143 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl72,892,302 - 2,910,143 (-)Ensemblpanpan1.1panPan2
BRAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0614,640,227 - 14,654,490 (-)NCBIROS_Cfam_1.0
Brat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344142,647,090 - 142,658,339 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936823393,842 - 404,366 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936823393,878 - 404,348 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,905,656 - 1,918,227 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.131,905,648 - 1,918,229 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.232,110,087 - 2,122,201 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BRAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12818,945,857 - 18,964,077 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2818,946,072 - 18,961,182 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660902,809,620 - 2,827,548 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,284,652 - 30,296,771 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,282,829 - 30,296,748 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Brat1
89 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:136
Interacting mature miRNAs:148
Transcripts:ENSRNOT00000001661, ENSRNOT00000064726
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121300829619212979Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat

Markers in Region
RH140358  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21213,937,447 - 13,937,634 (+)MAPPERmRatBN7.2
Rnor_6.01216,024,621 - 16,024,807NCBIRnor6.0
Rnor_5.01218,022,178 - 18,022,364UniSTSRnor5.0
RGSC_v3.41214,408,005 - 14,408,191UniSTSRGSC3.4
Celera1215,697,609 - 15,697,795UniSTS
RH 3.4 Map12204.04UniSTS
Cytogenetic Map12q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 16 12 50 6 55 6 216 63 119 42
Low 5 129 177 141 14 141 32 45 34 52 26 15 24
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000064726   ⟹   ENSRNOP00000059762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1213,928,914 - 13,941,246 (-)Ensembl
Rnor_6.0 Ensembl1216,015,771 - 16,027,881 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097546   ⟹   ENSRNOP00000089150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1213,928,898 - 13,941,248 (-)Ensembl
RefSeq Acc Id: XM_003751133   ⟹   XP_003751181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,043,004 - 19,055,203 (-)NCBI
mRatBN7.21213,928,889 - 13,941,254 (-)NCBI
Rnor_6.01216,016,062 - 16,028,427 (-)NCBI
Rnor_5.01218,013,619 - 18,036,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248968   ⟹   XP_006249030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,043,004 - 19,055,342 (-)NCBI
mRatBN7.21213,928,889 - 13,941,414 (-)NCBI
Rnor_6.01216,016,062 - 16,028,534 (-)NCBI
Rnor_5.01218,013,619 - 18,036,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598487   ⟹   XP_017453976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,043,004 - 19,055,342 (-)NCBI
mRatBN7.21213,928,889 - 13,941,414 (-)NCBI
Rnor_6.01216,016,062 - 16,028,534 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089962   ⟹   XP_038945890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,043,004 - 19,065,686 (-)NCBI
mRatBN7.21213,928,889 - 13,951,760 (-)NCBI
RefSeq Acc Id: XM_039089964   ⟹   XP_038945892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,043,004 - 19,054,635 (-)NCBI
mRatBN7.21213,928,889 - 13,940,706 (-)NCBI
RefSeq Acc Id: XM_039089965   ⟹   XP_038945893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,043,004 - 19,055,342 (-)NCBI
mRatBN7.21213,928,889 - 13,941,414 (-)NCBI
RefSeq Acc Id: XM_063271873   ⟹   XP_063127943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,043,004 - 19,054,635 (-)NCBI
RefSeq Acc Id: XM_063271874   ⟹   XP_063127944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,043,004 - 19,054,048 (-)NCBI
RefSeq Acc Id: XM_063271875   ⟹   XP_063127945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,044,919 - 19,055,342 (-)NCBI
RefSeq Acc Id: XP_003751181   ⟸   XM_003751133
- Peptide Label: isoform X1
- UniProtKB: D3ZSM9 (UniProtKB/TrEMBL),   A6K1R4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249030   ⟸   XM_006248968
- Peptide Label: isoform X1
- UniProtKB: D3ZSM9 (UniProtKB/TrEMBL),   A6K1R4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453976   ⟸   XM_017598487
- Peptide Label: isoform X2
- UniProtKB: A6K1R4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059762   ⟸   ENSRNOT00000064726
RefSeq Acc Id: XP_038945890   ⟸   XM_039089962
- Peptide Label: isoform X1
- UniProtKB: D3ZSM9 (UniProtKB/TrEMBL),   A6K1R4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945893   ⟸   XM_039089965
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038945892   ⟸   XM_039089964
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000089150   ⟸   ENSRNOT00000097546
RefSeq Acc Id: XP_063127943   ⟸   XM_063271873
- Peptide Label: isoform X3
- UniProtKB: A6K1R4 (UniProtKB/TrEMBL),   A0A8I6A979 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127944   ⟸   XM_063271874
- Peptide Label: isoform X3
- UniProtKB: A6K1R4 (UniProtKB/TrEMBL),   A0A8I6A979 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127945   ⟸   XM_063271875
- Peptide Label: isoform X6
- UniProtKB: A6K1R6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSM9-F1-model_v2 AlphaFold D3ZSM9 1-816 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565146 AgrOrtholog
BioCyc Gene G2FUF-19932 BioCyc
Ensembl Genes ENSRNOG00000001236 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064726.4 UniProtKB/TrEMBL
  ENSRNOT00000097546.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  BRAT1 UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
KEGG Report rno:498150 UniProtKB/TrEMBL
NCBI Gene 498150 ENTREZGENE
PANTHER BRCA1-ASSOCIATED ATM ACTIVATOR 1 UniProtKB/TrEMBL
  PTHR21331 UniProtKB/TrEMBL
Pfam HEAT UniProtKB/TrEMBL
PhenoGen Brat1 PhenoGen
RatGTEx ENSRNOG00000001236 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6A979 ENTREZGENE, UniProtKB/TrEMBL
  A6K1R4 ENTREZGENE, UniProtKB/TrEMBL
  A6K1R5_RAT UniProtKB/TrEMBL
  A6K1R6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSM9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-13 Brat1  BRCA1-associated ATM activator 1  Brat1-ps1  BRCA1-associated ATM activator 1, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-02-24 Brat1-ps1  BRCA1-associated ATM activator 1, pseudogene 1  Brat1  BRCA1-associated ATM activator 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-02-02 Brat1  BRCA1-associated ATM activator 1  RGD1565146  similar to hypothetical gene supported by AF226663  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565146  similar to hypothetical gene supported by AF226663   RGD1565146_predicted  similar to hypothetical gene supported by AF226663 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565146_predicted  similar to hypothetical gene supported by AF226663 (predicted)  LOC498150  similar to hypothetical gene supported by AF226663  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498150  similar to hypothetical gene supported by AF226663      Symbol and Name status set to provisional 70820 PROVISIONAL