BRAT1 (BRCA1 associated ATM activator 1) - Rat Genome Database

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Gene: BRAT1 (BRCA1 associated ATM activator 1) Canis lupus familiaris
Analyze
Symbol: BRAT1
Name: BRCA1 associated ATM activator 1
RGD ID: 40912267
Description: INVOLVED IN apoptotic process (ortholog); cell migration (ortholog); glucose metabolic process (ortholog); ASSOCIATED WITH D-bifunctional protein deficiency (ortholog); Dravet syndrome (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BRCA1-associated ATM activator 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0614,640,227 - 14,654,490 (-)NCBIROS_Cfam_1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
BRAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0614,640,227 - 14,654,490 (-)NCBIROS_Cfam_1.0
BRAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3872,537,810 - 2,555,524 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl72,537,810 - 2,555,694 (-)EnsemblGRCh38hg38GRCh38
GRCh3772,577,444 - 2,595,158 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3672,544,037 - 2,561,672 (-)NCBINCBI36Build 36hg18NCBI36
Build 3472,350,755 - 2,368,387NCBI
Celera72,546,833 - 2,564,507 (-)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef72,496,221 - 2,514,225 (-)NCBIHuRef
CHM1_172,577,050 - 2,594,991 (-)NCBICHM1_1
T2T-CHM13v2.072,651,326 - 2,669,118 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v272,625,313 - 2,643,304 (-)NCBI
Brat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,688,222 - 140,705,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5140,690,766 - 140,705,134 (+)EnsemblGRCm39 Ensembl
GRCm385140,704,763 - 140,719,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,705,011 - 140,719,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv375141,180,977 - 141,195,288 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365140,957,497 - 140,971,808 (+)NCBIMGSCv36mm8
Celera5137,765,436 - 137,779,747 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map579.25NCBI
Brat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,043,004 - 19,065,686 (-)NCBIGRCr8
mRatBN7.21213,928,889 - 13,951,760 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1213,928,898 - 13,941,248 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01216,016,062 - 16,028,534 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,015,771 - 16,027,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01218,013,619 - 18,036,360 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,400,221 - 14,411,251 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1215,689,050 - 15,701,522 (-)NCBICelera
Cytogenetic Map12q11NCBI
Brat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546012,662,779 - 12,673,287 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546012,662,005 - 12,674,223 (-)NCBIChiLan1.0ChiLan1.0
BRAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v267,494,073 - 7,512,923 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1755,818,774 - 55,837,638 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v072,797,551 - 2,815,847 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.172,892,302 - 2,910,143 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl72,892,302 - 2,910,143 (-)Ensemblpanpan1.1panPan2
Brat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344142,647,090 - 142,658,339 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936823393,842 - 404,366 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936823393,878 - 404,348 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,905,656 - 1,918,227 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.131,905,648 - 1,918,229 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.232,110,087 - 2,122,201 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BRAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12818,945,857 - 18,964,077 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2818,946,072 - 18,961,182 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660902,809,620 - 2,827,548 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,284,652 - 30,296,771 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,282,829 - 30,296,748 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038668401   ⟹   XP_038524329
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0614,640,227 - 14,653,985 (-)NCBI
RefSeq Acc Id: XM_038668402   ⟹   XP_038524330
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0614,640,227 - 14,654,275 (-)NCBI
RefSeq Acc Id: XM_038668403   ⟹   XP_038524331
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0614,640,227 - 14,654,490 (-)NCBI
RefSeq Acc Id: XM_038668404   ⟹   XP_038524332
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0614,640,227 - 14,653,985 (-)NCBI
RefSeq Acc Id: XM_038668405   ⟹   XP_038524333
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0614,640,227 - 14,654,490 (-)NCBI
RefSeq Acc Id: XM_038668406   ⟹   XP_038524334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0614,640,227 - 14,653,985 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038524333   ⟸   XM_038668405
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MKQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524331   ⟸   XM_038668403
- Peptide Label: isoform X1
- UniProtKB: A0A8C0L3X3 (UniProtKB/TrEMBL),   A0A8C0TAU6 (UniProtKB/TrEMBL),   A0A8C0MKQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524330   ⟸   XM_038668402
- Peptide Label: isoform X1
- UniProtKB: A0A8C0L3X3 (UniProtKB/TrEMBL),   A0A8C0TAU6 (UniProtKB/TrEMBL),   A0A8C0MKQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524332   ⟸   XM_038668404
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MKQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524334   ⟸   XM_038668406
- Peptide Label: isoform X3
- UniProtKB: A0A8I3S1P3 (UniProtKB/TrEMBL),   A0A8P0NHW5 (UniProtKB/TrEMBL),   A0A8C0MKQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524329   ⟸   XM_038668401
- Peptide Label: isoform X1
- UniProtKB: A0A8C0L3X3 (UniProtKB/TrEMBL),   A0A8C0TAU6 (UniProtKB/TrEMBL),   A0A8C0MKQ6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016358 UniProtKB/TrEMBL
  ENSCAFG00030008159 UniProtKB/TrEMBL
  ENSCAFG00040019791 UniProtKB/TrEMBL
  ENSCAFG00845015772 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025950.4 UniProtKB/TrEMBL
  ENSCAFT00030014988.1 UniProtKB/TrEMBL
  ENSCAFT00030015079.1 UniProtKB/TrEMBL
  ENSCAFT00030015191.1 UniProtKB/TrEMBL
  ENSCAFT00040036567.1 UniProtKB/TrEMBL
  ENSCAFT00040036678.1 UniProtKB/TrEMBL
  ENSCAFT00040036766.1 UniProtKB/TrEMBL
  ENSCAFT00845028086 ENTREZGENE
  ENSCAFT00845028086.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  BRAT1 UniProtKB/TrEMBL
NCBI Gene BRAT1 ENTREZGENE
PANTHER BRCA1-ASSOCIATED ATM ACTIVATOR 1 UniProtKB/TrEMBL
  PTHR21331 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C0L3X3 ENTREZGENE
  A0A8C0MKQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MNQ2_CANLF UniProtKB/TrEMBL
  A0A8C0T557_CANLF UniProtKB/TrEMBL
  A0A8C0T5B8_CANLF UniProtKB/TrEMBL
  A0A8C0TAU6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S1P3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NHW5 ENTREZGENE, UniProtKB/TrEMBL