HDAC8 (histone deacetylase 8) - Rat Genome Database

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Gene: HDAC8 (histone deacetylase 8) Homo sapiens
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Symbol: HDAC8
Name: histone deacetylase 8
RGD ID: 1344478
HGNC Page HGNC:13315
Description: Enables heat shock protein binding activity; histone deacetylase activity; and histone decrotonylase activity. Involved in mitotic sister chromatid cohesion; regulation of primary metabolic process; and regulation of protein stability. Predicted to be located in cytoplasm; nuclear chromosome; and nucleoplasm. Predicted to be part of histone deacetylase complex. Implicated in Cornelia de Lange syndrome 5 and Wilson-Turner syndrome. Biomarker of Hirschsprung's disease and chronic obstructive pulmonary disease.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CDA07; CDLS5; HD8; HDACL1; histone deacetylase-like 1; KDAC8; MRXS6; RPD3; Wilson-Turner syndrome (mental retardation, X-linked, syndromic-6, with gynecomastia and obesity); Wilson-Turner X-linked mental retardation syndrome; WTS
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X72,329,516 - 72,572,843 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX72,329,516 - 72,573,101 (-)EnsemblGRCh38hg38GRCh38
GRCh37X71,549,366 - 71,792,693 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X71,466,091 - 71,709,378 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X71,332,387 - 71,575,674NCBI
CeleraX71,892,584 - 72,136,175 (-)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX65,303,729 - 65,547,461 (-)NCBIHuRef
CHM1_1X71,442,370 - 71,685,931 (-)NCBICHM1_1
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
HDAC8Humanamphetamine abuse  ISOHdac8 (Rattus norvegicus)9681719mRNA:decreased expression:striatum (rat)RGD 
HDAC8HumanCardiomegaly treatmentISOHdac8 (Rattus norvegicus)9681716associated with HypertensionRGD 
HDAC8HumanCardiomegaly treatmentISOHdac8 (Mus musculus)13208811 RGD 
HDAC8Humanchronic obstructive pulmonary disease severityIEP 13208820mRNA:decreased expression:lung (human)RGD 
HDAC8HumanCornelia de Lange syndrome 5  IAGP 13208817DNA:snp:intron:c.164+5G>A (human)RGD 
HDAC8HumanCornelia de Lange syndrome 5  IAGP 11068490DNA:missense mutations more ...RGD 
HDAC8HumanGastrointestinal Motility Disorders  IEP 13208819protein:decreased expression:colon (human)RGD 
HDAC8HumanHirschsprung's disease  IEP 13208819protein:decreased expression:colon (human)RGD 
HDAC8Humanhypertension  ISOHdac8 (Rattus norvegicus) and Hdac8 (Mus musculus)13208602protein:decreased expression:heart (mouse and rat)RGD 
HDAC8Humanrenovascular hypertension treatmentISOHdac8 (Rattus norvegicus)13208809 RGD 
HDAC8HumanWilson-Turner syndrome  IAGP 13208817DNA:snp:intron:c.164+5G>A (human)RGD 
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Original Reference(s)
HDAC8Humanatrial heart septal defect  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Atrial septal defectClinVarPMID:25741868
HDAC8Humanautistic disorder  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
HDAC8Humanautosomal hemophilia A  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
HDAC8HumanCornelia de Lange syndrome 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 1ClinVarPMID:25741868
HDAC8HumanCornelia de Lange syndrome 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 1ClinVarPMID:25741868 and PMID:30158690
HDAC8HumanCornelia de Lange syndrome 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 1ClinVarPMID:25741868 and PMID:26671848
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:25741868 more ...
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:26463496 more ...
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:17576681 more ...
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:25741868
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:22889856 more ...
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:17576681 more ...
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:25741868 and PMID:28492532
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:22885700
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:18414213 more ...
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:25533962 more ...
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:18414213
HDAC8HumanCornelia de Lange syndrome 5  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Cornelia de Lange syndrome 5ClinVarPMID:25741868 and PMID:30158690
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Original Reference(s)
HDAC8HumanCornelia de Lange syndrome 5  ISSHdac8 (Mus musculus)13592920OMIM:300882MouseDO 
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HDAC8HumanCornelia de Lange syndrome 5  IAGP 7240710 OMIM 

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HDAC8Human(-)-epigallocatechin 3-gallate multiple interactionsEXP 6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of HDAC8 mRNACTDPMID:22079256
HDAC8Human1,2-dichloroethane decreases expressionISOHdac8 (Mus musculus)6480464ethylene dichloride results in decreased expression of HDAC8 mRNACTDPMID:28960355
HDAC8Human17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of HDAC8 mRNACTDPMID:22574217
HDAC8Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of HDAC8 mRNACTDPMID:32030086
HDAC8Human2,2',5,5'-tetrachlorobiphenyl increases expressionISOHdac8 (Rattus norvegicus)64804642 more ...CTDPMID:23829299
HDAC8Human2,4-dinitrotoluene affects expressionISOHdac8 (Rattus norvegicus)64804642 and 4-dinitrotoluene affects the expression of HDAC8 mRNACTDPMID:21346803
HDAC8Human2,6-dinitrotoluene affects expressionISOHdac8 (Rattus norvegicus)64804642 and 6-dinitrotoluene affects the expression of HDAC8 mRNACTDPMID:21346803
HDAC8Human3,3'-diindolylmethane multiple interactionsISOHdac8 (Mus musculus)64804643 more ...CTDPMID:24200994
HDAC8Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of HDAC8 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of HDAC8 mRNACTDPMID:28628672
HDAC8Human4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of HDAC8 mRNACTDPMID:28628672
HDAC8Human4,4'-sulfonyldiphenol decreases methylationEXP 6480464bisphenol S results in decreased methylation of HDAC8 geneCTDPMID:31601247
HDAC8Humanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of HDAC8 intronCTDPMID:30157460
HDAC8HumanAflatoxin B2 alpha decreases methylationEXP 6480464aflatoxin B2 results in decreased methylation of HDAC8 intronCTDPMID:30157460
HDAC8Humanaristolochic acid A decreases expressionEXP 6480464aristolochic acid I results in decreased expression of HDAC8 mRNACTDPMID:33212167
HDAC8Humanarsenite(3-) multiple interactionsEXP 6480464arsenite promotes the reaction [G3BP1 protein binds to HDAC8 mRNA]CTDPMID:32406909
HDAC8Humanarsenous acid increases expressionEXP 6480464Arsenic Trioxide results in increased expression of HDAC8 mRNACTDPMID:22521957
HDAC8Humanbenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of HDAC8 5' UTRCTDPMID:27901495
HDAC8Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of HDAC8 3' UTR and Benzo(a)pyrene affects the methylation of HDAC8 promoterCTDPMID:27901495
HDAC8Humanbenzo[a]pyrene decreases methylationISOHdac8 (Mus musculus)6480464Benzo(a)pyrene results in decreased methylation of HDAC8 intronCTDPMID:27901495
HDAC8Humanberberine decreases expressionEXP 6480464Berberine results in decreased expression of HDAC8 mRNACTDPMID:27311644

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Biological Process
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Original Reference(s)
HDAC8Humancellular response to forskolin  ISOHdac8 (Rattus norvegicus)9068941 RGDPMID:28559304 and REF_RGD_ID:13208603
HDAC8Humancellular response to trichostatin A  ISOHdac8 (Rattus norvegicus)9068941 RGDPMID:26391271 and REF_RGD_ID:11344521
HDAC8Humanchromatin organization involved_inIEAUniProtKB-KW:KW-0156150520179 UniProtGO_REF:0000043
HDAC8Humanchromatin organization involved_inTAS 150520179 PMID:10748112 and PMID:12711221PINCPMID:10748112 and PMID:12711221
HDAC8Humanheterochromatin formation involved_inIBAFB:FBgn0015805 more ...150520179 GO_CentralGO_REF:0000033
HDAC8Humanmitotic sister chromatid cohesion involved_inIMP 150520179 PMID:22885700UniProtPMID:22885700
HDAC8Humannegative regulation of gene expression  ISOHdac8 (Rattus norvegicus)9068941Stx1aRGDPMID:28559304 and REF_RGD_ID:13208603
HDAC8Humannegative regulation of osteoblast differentiation  ISOHdac8 (Rattus norvegicus)9068941 RGDPMID:25019367 and REF_RGD_ID:13208813
HDAC8Humannegative regulation of protein modification process  ISOHdac8 (Rattus norvegicus)9068941histone H3-K9 acetylationRGDPMID:25019367 and REF_RGD_ID:13208813
HDAC8Humannegative regulation of protein ubiquitination involved_inIDA 150520179 PMID:16809764BHF-UCLPMID:16809764
HDAC8Humannegative regulation of transcription by RNA polymerase II involved_inTAS 150520179 PMID:10748112PINCPMID:10748112
HDAC8Humanregulation of protein stability involved_inIDA 150520179 PMID:16809764BHF-UCLPMID:16809764
HDAC8Humanregulation of telomere maintenance involved_inIMP 150520179 PMID:16809764BHF-UCLPMID:16809764
HDAC8Humanresponse to 11-deoxycorticosterone  ISOHdac8 (Rattus norvegicus)9068941 RGDPMID:23868068 and REF_RGD_ID:9681716
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Cellular Component
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HDAC8Humanchromosome located_inIEAUniProtKB-SubCell:SL-0468150520179 UniProtGO_REF:0000044
HDAC8Humanchromosome located_inIEAUniProtKB-KW:KW-0158150520179 UniProtGO_REF:0000043
HDAC8Humancytoplasm located_inTAS 150520179 PMID:12711221UniProtPMID:12711221
HDAC8Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
HDAC8Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
HDAC8Humanhistone deacetylase complex part_ofTAS 150520179 PMID:12711221UniProtPMID:12711221
HDAC8Humannuclear chromosome located_inTAS 150520179 PMID:10748112PINCPMID:10748112
HDAC8Humannucleoplasm located_inTAS 150520179 ReactomeReactome:R-HSA-3782637
HDAC8Humannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
HDAC8Humannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
HDAC8Humannucleus located_inTAS 150520179 PMID:12711221UniProtPMID:12711221
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Molecular Function
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HDAC8Humanchromatin binding  ISOHdac8 (Rattus norvegicus)9068941 RGDPMID:28559304 and REF_RGD_ID:13208603
HDAC8Humandeacetylase activity  ISOHdac8 (Rattus norvegicus)9068941 RGDPMID:23868068 and REF_RGD_ID:9681716
HDAC8HumanDNA-binding transcription factor binding enablesTAS 150520179 PMID:12711221UniProtPMID:12711221
HDAC8Humanhistone deacetylase activity enablesIEAInterPro:IPR003084150520179 InterProGO_REF:0000002
HDAC8Humanhistone deacetylase activity enablesIBAFB:FBgn0015805 more ...150520179 GO_CentralGO_REF:0000033
HDAC8Humanhistone deacetylase activity enablesIDA 150520179 PMID:28497810UniProtPMID:28497810
HDAC8Humanhistone deacetylase activity enablesTAS 150520179 PMID:10748112 and PMID:12711221PINCPMID:10748112 more ...
HDAC8Humanhistone deacetylase activity, hydrolytic mechanism enablesIEARHEA:58196150520179 RHEAGO_REF:0000116
HDAC8Humanhistone deacetylase activity, hydrolytic mechanism enablesIEAEC:3.5.1.98150520179 UniProtGO_REF:0000003
HDAC8Humanhistone decrotonylase activity enablesIDA 150520179 PMID:28497810UniProtPMID:28497810
HDAC8HumanHsp70 protein binding enablesIPIUniProtKB:P0DMV8 and UniProtKB:P0DMV9150520179 PMID:16809764BHF-UCLPMID:16809764
HDAC8HumanHsp90 protein binding enablesIPIUniProtKB:P07900 and UniProtKB:P08238150520179 PMID:16809764BHF-UCLPMID:16809764
HDAC8Humanhydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
HDAC8Humanmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
HDAC8Humanprotein binding enablesIPIUniProtKB:P43246150520179 PMID:26221039UniProtPMID:26221039
HDAC8Humanprotein binding enablesIPIUniProtKB:Q9UPR3150520179 PMID:16809764BHF-UCLPMID:16809764
HDAC8Humanprotein decrotonylase activity enablesIEARHEA:69172150520179 RHEAGO_REF:0000116
HDAC8Humanprotein lysine deacetylase activity enablesIDA 150520179 PMID:22885700UniProtPMID:22885700
HDAC8Humanprotein lysine deacetylase activity enablesIEAARBA:ARBA00028193150520179 UniProtGO_REF:0000117
HDAC8Humanprotein lysine deacetylase activity enablesIEARHEA:58108150520179 RHEAGO_REF:0000116
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RGD Manual Annotations


  
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HDAC8Humanhistone modification pathway   TAS 9104959 RGD 
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HDAC8HumanAbnormal cardiovascular system morphology  IAGP 8699517 HPOORPHA:199
HDAC8HumanAbnormal facial shape  IAGP 8699517 HPOORPHA:3459
HDAC8HumanAbnormal morphology of ulna  IAGP 8699517 HPOORPHA:199
HDAC8HumanAbnormal speech pattern  IAGP 8699517 HPOORPHA:199
HDAC8HumanAbnormality of the uterus  IAGP 8699517 HPOORPHA:199
HDAC8HumanAbnormally low-pitched voice  IAGP 8699517 HPOORPHA:199
HDAC8HumanAnteverted nares  IAGP 8699517 HPOMIM:300882
HDAC8HumanAnteverted nares  IAGP 8699517 HPOORPHA:199
HDAC8HumanAnxiety  IAGP 8699517 HPOORPHA:199
HDAC8HumanAplasia/Hypoplasia of the cerebellum  IAGP 8699517 HPOORPHA:199
HDAC8HumanAtresia of the external auditory canal  IAGP 8699517 HPOORPHA:199
HDAC8HumanAtrial septal defect  IAGP 8699517 HPOORPHA:199
HDAC8HumanAttention deficit hyperactivity disorder  IAGP 8699517 HPOORPHA:199
HDAC8HumanAtypical behavior  IAGP 8699517 HPOMIM:300882
HDAC8HumanAutism  IAGP 8699517 HPOORPHA:199
HDAC8HumanBilateral single transverse palmar creases  IAGP 8699517 HPOORPHA:199
HDAC8HumanBlepharitis  IAGP 8699517 HPOORPHA:199
HDAC8HumanBrachycephaly  IAGP 8699517 HPOMIM:300882
HDAC8HumanBrachycephaly  IAGP 8699517 HPOORPHA:199
HDAC8HumanBroad nasal tip  IAGP 8699517 HPOMIM:300882
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HDAC8HumanAbnormal facial shape  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Abnormal facial shapeClinVarPMID:25741868 and PMID:26671848
HDAC8HumanAtrial septal defect  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Atrial septal defectClinVarPMID:25741868
HDAC8HumanAutism  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
HDAC8HumanDelayed speech and language development  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Delayed speechClinVarPMID:25741868 and PMID:26671848
HDAC8HumanGlobal developmental delay  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Retarded psychomotor developmentClinVarPMID:25741868 and PMID:26671848
HDAC8HumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Nonprogressive mental retardationClinVarPMID:25741868
HDAC8HumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:22885700 more ...
HDAC8HumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
HDAC8HumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
HDAC8HumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
HDAC8HumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
HDAC8HumanIntestinal malrotation  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: MalrotationClinVarPMID:25741868
HDAC8HumanIntrauterine growth retardation  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Prenatal-onset growth retardationClinVarPMID:25741868 and PMID:26671848
HDAC8HumanMicrocephaly  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Decreased size of skullClinVarPMID:25741868 and PMID:26671848
HDAC8HumanSparse scalp hair  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Sparse scalp hairClinVarPMID:25741868 and PMID:26671848
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Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. X-exome sequencing identifies a HDAC8 variant in a large pedigree with X-linked intellectual disability, truncal obesity, gynaecomastia, hypogonadism and unusual face. Harakalova M, etal., J Med Genet. 2012 Aug;49(8):539-43. doi: 10.1136/jmedgenet-2012-100921.
3. Decreased histone deacetylase activity in chronic obstructive pulmonary disease. Ito K, etal., N Engl J Med. 2005 May 12;352(19):1967-76.
4. Loss-of-function HDAC8 mutations cause a phenotypic spectrum of Cornelia de Lange syndrome-like features, ocular hypertelorism, large fontanelle and X-linked inheritance. Kaiser FJ, etal., Hum Mol Genet. 2014 Jun 1;23(11):2888-900. doi: 10.1093/hmg/ddu002. Epub 2014 Jan 8.
5. HDAC inhibition suppresses cardiac hypertrophy and fibrosis in DOCA-salt hypertensive rats via regulation of HDAC6/HDAC8 enzyme activity. Kee HJ, etal., Kidney Blood Press Res. 2013;37(4-5):229-39. doi: 10.1159/000350148. Epub 2013 Jul 8.
6. Expression of Class I and Class II a/b Histone Deacetylase is Dysregulated in Hypertensive Animal Models. Kee HJ, etal., Korean Circ J. 2017 May;47(3):392-400. doi: 10.4070/kcj.2016.0266. Epub 2017 May 12.
7. Roles of HDAC2 and HDAC8 in Cardiac Remodeling in Renovascular Hypertensive Rats and the Effects of Valproic Acid Sodium. Li RF, etal., Pharmacology. 2017;99(1-2):27-39. doi: 10.1159/000449467. Epub 2016 Sep 27.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Differential effects of binge methamphetamine injections on the mRNA expression of histone deacetylases (HDACs) in the rat striatum. Omonijo O, etal., Neurotoxicology. 2014 Oct 27;45C:178-184. doi: 10.1016/j.neuro.2014.10.008.
10. Physical and functional HAT/HDAC interplay regulates protein acetylation balance. Peserico A and Simone C, J Biomed Biotechnol. 2011;2011:371832. doi: 10.1155/2011/371832. Epub 2010 Dec 5.
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
14. Novel smooth muscle markers reveal abnormalities of the intestinal musculature in severe colorectal motility disorders. Wedel T, etal., Neurogastroenterol Motil. 2006 Jul;18(7):526-38.
15. miR-21-3p regulates cardiac hypertrophic response by targeting histone deacetylase-8. Yan M, etal., Cardiovasc Res. 2015 Mar 1;105(3):340-52. doi: 10.1093/cvr/cvu254. Epub 2014 Dec 10.
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PMID:1605216   PMID:1746601   PMID:8889548   PMID:10748112   PMID:10756090   PMID:10922473   PMID:10926844   PMID:11533236   PMID:12082111   PMID:12477932   PMID:12509458   PMID:12711221  
PMID:14578343   PMID:14684825   PMID:14701748   PMID:14702039   PMID:15342556   PMID:15477595   PMID:15590418   PMID:15772115   PMID:16681389   PMID:16809764   PMID:17721440   PMID:17786334  
PMID:18256683   PMID:19053282   PMID:19070599   PMID:19118036   PMID:19140693   PMID:19355988   PMID:19913121   PMID:20029090   PMID:20301283   PMID:20301533   PMID:20484414   PMID:20545365  
PMID:20628086   PMID:21455583   PMID:21499270   PMID:21790156   PMID:21873635   PMID:22046129   PMID:22391568   PMID:22885700   PMID:22944197   PMID:23111066   PMID:23430957   PMID:23482931  
PMID:23752268   PMID:24077923   PMID:24171457   PMID:24404147   PMID:24920679   PMID:25011684   PMID:25075551   PMID:25321483   PMID:25407689   PMID:25451941   PMID:25516458   PMID:25605725  
PMID:25793284   PMID:25836739   PMID:26200462   PMID:26221039   PMID:26383163   PMID:26387755   PMID:26389662   PMID:26402585   PMID:26412386   PMID:26463496   PMID:26671848   PMID:26679995  
PMID:26760575   PMID:26792731   PMID:26806311   PMID:26923266   PMID:26933971   PMID:26996235   PMID:27072133   PMID:27283490   PMID:27374062   PMID:27420561   PMID:27576763   PMID:27638301  
PMID:27933794   PMID:28004115   PMID:28232663   PMID:28319085   PMID:28390197   PMID:28497810   PMID:28509866   PMID:28581483   PMID:28611215   PMID:28749131   PMID:28846375   PMID:28937750  
PMID:29035536   PMID:29279609   PMID:29519750   PMID:29716651   PMID:29991052   PMID:30054507   PMID:30063117   PMID:30246374   PMID:30358439   PMID:30426726   PMID:30582912   PMID:30987999  
PMID:31402267   PMID:31421254   PMID:31508813   PMID:31605710   PMID:31606091   PMID:31633931   PMID:31730902   PMID:31741433   PMID:31748509   PMID:31907955   PMID:31970414   PMID:32171858  
1 to 10 of 12 rows



HDAC8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X72,329,516 - 72,572,843 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX72,329,516 - 72,573,101 (-)EnsemblGRCh38hg38GRCh38
GRCh37X71,549,366 - 71,792,693 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X71,466,091 - 71,709,378 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X71,332,387 - 71,575,674NCBI
CeleraX71,892,584 - 72,136,175 (-)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX65,303,729 - 65,547,461 (-)NCBIHuRef
CHM1_1X71,442,370 - 71,685,931 (-)NCBICHM1_1
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBIT2T-CHM13v2.0
Hdac8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X101,328,244 - 101,549,005 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX101,328,245 - 101,548,965 (-)EnsemblGRCm39 Ensembl
GRCm38X102,284,638 - 102,505,381 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX102,284,639 - 102,505,359 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X99,479,979 - 99,700,487 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X98,487,359 - 98,707,867 (-)NCBIMGSCv36mm8
CeleraX89,195,856 - 89,416,063 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX45.28NCBI
Hdac8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X71,425,240 - 71,632,865 (-)NCBIGRCr8
mRatBN7.2X67,385,288 - 67,593,014 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX67,385,289 - 67,592,923 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX68,868,650 - 69,076,271 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X72,368,892 - 72,576,504 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X69,930,041 - 70,137,656 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X72,163,777 - 72,370,058 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX72,163,777 - 72,370,044 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X73,566,613 - 73,589,000 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X73,694,610 - 73,698,948 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X90,336,001 - 90,544,511 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX67,738,891 - 67,946,303 (-)NCBICelera
Cytogenetic MapXq22NCBI
Hdac8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547511,748,365 - 12,013,241 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547511,748,502 - 12,012,884 (-)NCBIChiLan1.0ChiLan1.0
HDAC8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X72,002,591 - 72,248,461 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X72,006,198 - 72,252,066 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X61,565,790 - 61,811,588 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X71,649,178 - 71,894,896 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX71,649,341 - 71,894,896 (-)Ensemblpanpan1.1panPan2
HDAC8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X56,357,205 - 56,574,443 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX56,357,177 - 56,574,401 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX47,183,095 - 47,400,619 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X57,411,265 - 57,628,877 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX57,411,268 - 57,628,840 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X55,325,722 - 55,544,604 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X56,723,145 - 56,940,470 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X56,571,889 - 56,789,465 (-)NCBIUU_Cfam_GSD_1.0
Hdac8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X45,327,793 - 45,554,498 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367621,425,335 - 1,652,063 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367621,425,337 - 1,652,058 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX58,210,192 - 58,450,573 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X58,210,182 - 58,450,681 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HDAC8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X62,154,374 - 62,393,149 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX62,154,365 - 62,393,196 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660654,003,868 - 4,261,439 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hdac8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249032,620,501 - 2,852,822 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249032,620,571 - 2,852,247 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in HDAC8
296 total Variants

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR449Ahsa-miR-449aMirtarbaseexternal_infoWestern blotNon-Functional MTI19252524
MIR93hsa-miR-93-5pOncomiRDBexternal_infoNANA22180714

Predicted Target Of
Summary Value
Count of predictions:5565
Count of miRNA genes:1448
Interacting mature miRNAs:1957
Transcripts:ENST00000373554, ENST00000373556, ENST00000373559, ENST00000373560, ENST00000373561, ENST00000373568, ENST00000373571, ENST00000373573, ENST00000373583, ENST00000373589, ENST00000412342, ENST00000415409, ENST00000421523, ENST00000429103, ENST00000436675, ENST00000439122, ENST00000444609, ENST00000470998, ENST00000478743, ENST00000486704
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

RH93559  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,549,455 - 71,549,613UniSTSGRCh37
Build 36X71,466,180 - 71,466,338RGDNCBI36
CeleraX71,892,673 - 71,892,831RGD
Cytogenetic MapXq13UniSTS
HuRefX65,303,818 - 65,303,976UniSTS
GeneMap99-GB4 RH MapX242.82UniSTS
DXS7027E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,549,407 - 71,549,560UniSTSGRCh37
Build 36X71,466,132 - 71,466,285RGDNCBI36
CeleraX71,892,625 - 71,892,778RGD
Cytogenetic MapXq13UniSTS
HuRefX65,303,770 - 65,303,923UniSTS
DXS1163  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,770,890 - 71,771,056UniSTSGRCh37
Build 36X71,687,615 - 71,687,781RGDNCBI36
CeleraX72,114,114 - 72,114,280RGD
Cytogenetic MapXq13UniSTS
HuRefX65,525,830 - 65,525,996UniSTS
DXS1377  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,755,655 - 71,755,733UniSTSGRCh37
Build 36X71,672,380 - 71,672,458RGDNCBI36
CeleraX72,098,879 - 72,098,957RGD
Cytogenetic MapXq13UniSTS
HuRefX65,510,595 - 65,510,673UniSTS
RH120411  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,614,064 - 71,614,388UniSTSGRCh37
Build 36X71,530,789 - 71,531,113RGDNCBI36
CeleraX71,957,283 - 71,957,607RGD
Cytogenetic MapXq13UniSTS
HuRefX65,368,720 - 65,369,044UniSTS
TNG Radiation Hybrid MapX415.0UniSTS
SGC34789  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,562,332 - 71,562,481UniSTSGRCh37
Build 36X71,479,057 - 71,479,206RGDNCBI36
CeleraX71,905,551 - 71,905,700RGD
Cytogenetic MapXq13UniSTS
HuRefX65,316,332 - 65,316,481UniSTS
GeneMap99-GB4 RH MapX239.44UniSTS
Whitehead-RH MapX185.2UniSTS
NCBI RH MapX407.2UniSTS
A009W47  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,562,236 - 71,562,394UniSTSGRCh37
Build 36X71,478,961 - 71,479,119RGDNCBI36
CeleraX71,905,455 - 71,905,613RGD
Cytogenetic MapXq13UniSTS
HuRefX65,316,236 - 65,316,394UniSTS
GeneMap99-GB4 RH MapX239.21UniSTS
NCBI RH MapX405.8UniSTS
G30088  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,693,319 - 71,693,420UniSTSGRCh37
Build 36X71,610,044 - 71,610,145RGDNCBI36
CeleraX72,036,543 - 72,036,644RGD
Cytogenetic MapXq13UniSTS
HuRefX65,448,166 - 65,448,267UniSTS
RH16247  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,562,238 - 71,562,372UniSTSGRCh37
Build 36X71,478,963 - 71,479,097RGDNCBI36
CeleraX71,905,457 - 71,905,591RGD
Cytogenetic MapXq13UniSTS
HuRefX65,316,238 - 65,316,372UniSTS
GeneMap99-GB4 RH MapX239.31UniSTS
L77829  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,625,533 - 71,625,602UniSTSGRCh37
Build 36X71,542,258 - 71,542,327RGDNCBI36
CeleraX71,968,752 - 71,968,821RGD
Cytogenetic MapXq13UniSTS
HuRefX65,380,190 - 65,380,259UniSTS
G32931  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X71,562,236 - 71,562,394UniSTSGRCh37
CeleraX71,905,455 - 71,905,613UniSTS
Cytogenetic MapXq13UniSTS
HuRefX65,316,236 - 65,316,394UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4973 1726 2351 6 624 1951 465 2269 7306 6472 53 3734 1 852 1744 1617 175 1


1 to 30 of 62 rows
RefSeq Transcripts NG_015851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_051952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024452405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047442252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047442255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047442256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047442257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054327390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054327391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054327392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054327393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054327394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054327395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054327396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 62 rows

Ensembl Acc Id: ENST00000373554   ⟹   ENSP00000362655
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,567,582 - 72,572,853 (-)Ensembl
Ensembl Acc Id: ENST00000373556   ⟹   ENSP00000362657
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,567,582 - 72,572,856 (-)Ensembl
Ensembl Acc Id: ENST00000373559   ⟹   ENSP00000362660
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,474,535 - 72,572,812 (-)Ensembl
Ensembl Acc Id: ENST00000373560   ⟹   ENSP00000362661
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,474,407 - 72,572,830 (-)Ensembl
Ensembl Acc Id: ENST00000373568   ⟹   ENSP00000362669
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,351,300 - 72,572,842 (-)Ensembl
Ensembl Acc Id: ENST00000373571   ⟹   ENSP00000362672
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,466,696 - 72,572,843 (-)Ensembl
Ensembl Acc Id: ENST00000373573   ⟹   ENSP00000362674
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,516 - 72,572,843 (-)Ensembl
Ensembl Acc Id: ENST00000373583   ⟹   ENSP00000362685
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,516 - 72,572,877 (-)Ensembl
Ensembl Acc Id: ENST00000373589   ⟹   ENSP00000362691
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,560 - 72,573,101 (-)Ensembl
Ensembl Acc Id: ENST00000412342   ⟹   ENSP00000400180
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,464,668 - 72,572,778 (-)Ensembl
Ensembl Acc Id: ENST00000415409   ⟹   ENSP00000396424
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,385,109 - 72,572,843 (-)Ensembl
Ensembl Acc Id: ENST00000421523   ⟹   ENSP00000398997
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,495,159 - 72,572,809 (-)Ensembl
Ensembl Acc Id: ENST00000436675   ⟹   ENSP00000416489
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,351,791 - 72,572,858 (-)Ensembl
Ensembl Acc Id: ENST00000439122   ⟹   ENSP00000414486
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,473,416 - 72,573,083 (-)Ensembl
Ensembl Acc Id: ENST00000444609
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,568,755 - 72,573,079 (-)Ensembl
Ensembl Acc Id: ENST00000470998   ⟹   ENSP00000497317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,330,832 - 72,464,564 (-)Ensembl
Ensembl Acc Id: ENST00000478743
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,421,655 - 72,572,847 (-)Ensembl
Ensembl Acc Id: ENST00000486704
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,571,946 - 72,572,816 (-)Ensembl
Ensembl Acc Id: ENST00000647594   ⟹   ENSP00000496814
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,568 - 72,572,865 (-)Ensembl
Ensembl Acc Id: ENST00000647606   ⟹   ENSP00000497286
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,351,792 - 72,568,791 (-)Ensembl
Ensembl Acc Id: ENST00000647641
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,333,656 - 72,572,848 (-)Ensembl
Ensembl Acc Id: ENST00000647654   ⟹   ENSP00000497568
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,559 - 72,572,843 (-)Ensembl
Ensembl Acc Id: ENST00000647718
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,460,155 - 72,572,816 (-)Ensembl
Ensembl Acc Id: ENST00000647859   ⟹   ENSP00000497530
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,568 - 72,572,843 (-)Ensembl
Ensembl Acc Id: ENST00000647886   ⟹   ENSP00000497188
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,557 - 72,572,859 (-)Ensembl
Ensembl Acc Id: ENST00000647974   ⟹   ENSP00000497324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,473,441 - 72,572,095 (-)Ensembl
Ensembl Acc Id: ENST00000647980   ⟹   ENSP00000498002
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,568 - 72,572,847 (-)Ensembl
Ensembl Acc Id: ENST00000648036   ⟹   ENSP00000496994
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,473,431 - 72,572,810 (-)Ensembl
Ensembl Acc Id: ENST00000648101
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,495,194 - 72,572,627 (-)Ensembl
Ensembl Acc Id: ENST00000648139   ⟹   ENSP00000496818
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,351,379 - 72,572,816 (-)Ensembl
Ensembl Acc Id: ENST00000648158
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,473,417 - 72,475,729 (-)Ensembl
Ensembl Acc Id: ENST00000648276   ⟹   ENSP00000497619
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,920 - 72,464,712 (-)Ensembl
Ensembl Acc Id: ENST00000648285
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,464,029 - 72,572,817 (-)Ensembl
Ensembl Acc Id: ENST00000648298   ⟹   ENSP00000496866
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,457,402 - 72,572,843 (-)Ensembl
Ensembl Acc Id: ENST00000648452   ⟹   ENSP00000497268
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,538 - 72,572,865 (-)Ensembl
Ensembl Acc Id: ENST00000648459   ⟹   ENSP00000498072
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,559 - 72,568,022 (-)Ensembl
Ensembl Acc Id: ENST00000648504   ⟹   ENSP00000497668
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,559 - 72,572,698 (-)Ensembl
Ensembl Acc Id: ENST00000648577   ⟹   ENSP00000497552
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,484,851 - 72,572,816 (-)Ensembl
Ensembl Acc Id: ENST00000648711   ⟹   ENSP00000498040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,351,622 - 72,572,659 (-)Ensembl
Ensembl Acc Id: ENST00000648731   ⟹   ENSP00000497907
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,578 - 72,572,681 (-)Ensembl
Ensembl Acc Id: ENST00000648834   ⟹   ENSP00000497764
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,351,421 - 72,572,818 (-)Ensembl
Ensembl Acc Id: ENST00000648850   ⟹   ENSP00000497384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,519 - 72,494,380 (-)Ensembl
Ensembl Acc Id: ENST00000648855
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,557 - 72,572,685 (-)Ensembl
Ensembl Acc Id: ENST00000648870   ⟹   ENSP00000497599
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,457,406 - 72,572,856 (-)Ensembl
Ensembl Acc Id: ENST00000648939   ⟹   ENSP00000497442
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,559 - 72,572,787 (-)Ensembl
Ensembl Acc Id: ENST00000648962   ⟹   ENSP00000497516
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,473,416 - 72,572,821 (-)Ensembl
Ensembl Acc Id: ENST00000649097   ⟹   ENSP00000497551
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,538 - 72,572,816 (-)Ensembl
Ensembl Acc Id: ENST00000649116   ⟹   ENSP00000497925
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,457,416 - 72,572,843 (-)Ensembl
Ensembl Acc Id: ENST00000649181   ⟹   ENSP00000498150
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,618 - 72,572,781 (-)Ensembl
Ensembl Acc Id: ENST00000649242   ⟹   ENSP00000497943
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,460,259 - 72,572,816 (-)Ensembl
Ensembl Acc Id: ENST00000649274   ⟹   ENSP00000497032
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,725 - 72,572,704 (-)Ensembl
Ensembl Acc Id: ENST00000649518   ⟹   ENSP00000498169
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,460,342 - 72,572,866 (-)Ensembl
Ensembl Acc Id: ENST00000649543   ⟹   ENSP00000496826
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,351,144 - 72,572,816 (-)Ensembl
Ensembl Acc Id: ENST00000649752   ⟹   ENSP00000497267
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,457,621 - 72,572,843 (-)Ensembl
Ensembl Acc Id: ENST00000650076   ⟹   ENSP00000497022
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,574 - 72,495,179 (-)Ensembl
Ensembl Acc Id: ENST00000650126   ⟹   ENSP00000498144
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,473,431 - 72,572,847 (-)Ensembl
Ensembl Acc Id: ENST00000650471   ⟹   ENSP00000498027
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,805 - 72,572,843 (-)Ensembl
Ensembl Acc Id: ENST00000650477
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,569 - 72,349,797 (-)Ensembl
Ensembl Acc Id: ENST00000650604   ⟹   ENSP00000497105
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,329,568 - 72,573,081 (-)Ensembl
Ensembl Acc Id: ENST00000650636   ⟹   ENSP00000497191
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX72,562,220 - 72,572,816 (-)Ensembl
RefSeq Acc Id: NM_001166418   ⟹   NP_001159890
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
GRCh37X71,549,366 - 71,792,953 (-)ENTREZGENE
HuRefX65,303,729 - 65,547,461 (-)ENTREZGENE
CHM1_1X71,442,370 - 71,685,931 (-)NCBI
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001166419   ⟹   NP_001159891
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,473,416 - 72,572,843 (-)NCBI
GRCh37X71,549,366 - 71,792,953 (-)ENTREZGENE
HuRefX65,303,729 - 65,547,461 (-)ENTREZGENE
CHM1_1X71,586,254 - 71,685,931 (-)NCBI
T2T-CHM13v2.0X70,906,322 - 71,005,758 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001166420   ⟹   NP_001159892
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,567,582 - 72,572,843 (-)NCBI
GRCh37X71,549,366 - 71,792,953 (-)ENTREZGENE
HuRefX65,303,729 - 65,547,461 (-)ENTREZGENE
CHM1_1X71,680,391 - 71,685,931 (-)NCBI
T2T-CHM13v2.0X71,000,497 - 71,005,758 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001166422   ⟹   NP_001159894
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,567,582 - 72,572,843 (-)NCBI
GRCh37X71,549,366 - 71,792,953 (-)ENTREZGENE
HuRefX65,303,729 - 65,547,461 (-)ENTREZGENE
CHM1_1X71,680,391 - 71,685,931 (-)NCBI
T2T-CHM13v2.0X71,000,497 - 71,005,758 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001166448   ⟹   NP_001159920
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,473,416 - 72,572,843 (-)NCBI
GRCh37X71,549,366 - 71,792,953 (-)ENTREZGENE
HuRefX65,303,729 - 65,547,461 (-)ENTREZGENE
CHM1_1X71,586,254 - 71,685,931 (-)NCBI
T2T-CHM13v2.0X70,906,322 - 71,005,758 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001410725   ⟹   NP_001397654
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
RefSeq Acc Id: NM_001410727   ⟹   NP_001397656
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
RefSeq Acc Id: NM_001410728   ⟹   NP_001397657
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
RefSeq Acc Id: NM_001410729   ⟹   NP_001397658
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,457,399 - 72,572,843 (-)NCBI
T2T-CHM13v2.0X70,890,301 - 71,005,758 (-)NCBI
RefSeq Acc Id: NM_001410730   ⟹   NP_001397659
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,473,416 - 72,572,843 (-)NCBI
T2T-CHM13v2.0X70,906,322 - 71,005,758 (-)NCBI
RefSeq Acc Id: NM_018486   ⟹   NP_060956
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
GRCh37X71,549,366 - 71,792,953 (-)ENTREZGENE
Build 36X71,466,091 - 71,709,378 (-)NCBI Archive
HuRefX65,303,729 - 65,547,461 (-)ENTREZGENE
CHM1_1X71,442,370 - 71,685,931 (-)NCBI
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
Sequence:
RefSeq Acc Id: NR_051952
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
GRCh37X71,549,366 - 71,792,953 (-)NCBI
HuRefX65,303,729 - 65,547,461 (-)NCBI
CHM1_1X71,442,370 - 71,685,931 (-)NCBI
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017029640   ⟹   XP_016885129
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017029643   ⟹   XP_016885132
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017029644   ⟹   XP_016885133
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017029645   ⟹   XP_016885134
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047442252   ⟹   XP_047298208
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,352,442 - 72,572,843 (-)NCBI
RefSeq Acc Id: XM_047442255   ⟹   XP_047298211
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
RefSeq Acc Id: XM_047442256   ⟹   XP_047298212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,101 (-)NCBI
RefSeq Acc Id: XM_047442257   ⟹   XP_047298213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,494,341 (-)NCBI
RefSeq Acc Id: XM_054327390   ⟹   XP_054183365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
RefSeq Acc Id: XM_054327391   ⟹   XP_054183366
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X70,785,332 - 71,005,758 (-)NCBI
RefSeq Acc Id: XM_054327392   ⟹   XP_054183367
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
RefSeq Acc Id: XM_054327393   ⟹   XP_054183368
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
RefSeq Acc Id: XM_054327394   ⟹   XP_054183369
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
RefSeq Acc Id: XM_054327395   ⟹   XP_054183370
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
RefSeq Acc Id: XM_054327396   ⟹   XP_054183371
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X70,762,405 - 71,005,016 (-)NCBI
RefSeq Acc Id: XM_054327397   ⟹   XP_054183372
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X70,762,405 - 70,927,246 (-)NCBI
RefSeq Acc Id: XR_008485495
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X70,762,405 - 71,005,758 (-)NCBI
RefSeq Acc Id: XR_938402
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,329,516 - 72,572,843 (-)NCBI
Sequence:
1 to 30 of 61 rows
Protein RefSeqs NP_001159890 (Get FASTA)   NCBI Sequence Viewer  
  NP_001159891 (Get FASTA)   NCBI Sequence Viewer  
  NP_001159892 (Get FASTA)   NCBI Sequence Viewer  
  NP_001159894 (Get FASTA)   NCBI Sequence Viewer  
  NP_001159920 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397654 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397656 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397657 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397658 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397659 (Get FASTA)   NCBI Sequence Viewer  
  NP_060956 (Get FASTA)   NCBI Sequence Viewer  
  XP_016885129 (Get FASTA)   NCBI Sequence Viewer  
  XP_016885132 (Get FASTA)   NCBI Sequence Viewer  
  XP_016885133 (Get FASTA)   NCBI Sequence Viewer  
  XP_016885134 (Get FASTA)   NCBI Sequence Viewer  
  XP_047298208 (Get FASTA)   NCBI Sequence Viewer  
  XP_047298211 (Get FASTA)   NCBI Sequence Viewer  
  XP_047298212 (Get FASTA)   NCBI Sequence Viewer  
  XP_047298213 (Get FASTA)   NCBI Sequence Viewer  
  XP_054183365 (Get FASTA)   NCBI Sequence Viewer  
  XP_054183366 (Get FASTA)   NCBI Sequence Viewer  
  XP_054183367 (Get FASTA)   NCBI Sequence Viewer  
  XP_054183368 (Get FASTA)   NCBI Sequence Viewer  
  XP_054183369 (Get FASTA)   NCBI Sequence Viewer  
  XP_054183370 (Get FASTA)   NCBI Sequence Viewer  
  XP_054183371 (Get FASTA)   NCBI Sequence Viewer  
  XP_054183372 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF73076 (Get FASTA)   NCBI Sequence Viewer  
  AAF73428 (Get FASTA)   NCBI Sequence Viewer  
  AAH50433 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 61 rows
1 to 5 of 77 rows
1 to 5 of 77 rows
RefSeq Acc Id: NP_060956   ⟸   NM_018486
- Peptide Label: isoform 1
- UniProtKB: Q9NYH4 (UniProtKB/Swiss-Prot),   Q9NP76 (UniProtKB/Swiss-Prot),   Q9BY41 (UniProtKB/Swiss-Prot),   Q86VC8 (UniProtKB/Swiss-Prot),   B4DV22 (UniProtKB/Swiss-Prot),   B4DKN0 (UniProtKB/Swiss-Prot),   A8MQ62 (UniProtKB/Swiss-Prot),   A6NJR3 (UniProtKB/Swiss-Prot),   A6NET3 (UniProtKB/Swiss-Prot),   A6ND61 (UniProtKB/Swiss-Prot),   A6ND12 (UniProtKB/Swiss-Prot),   A0A3B3ITZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001159890   ⟸   NM_001166418
- Peptide Label: isoform 2
- UniProtKB: A0A3B3ISE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001159891   ⟸   NM_001166419
- Peptide Label: isoform 3
- UniProtKB: A0A3B3IRZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001159920   ⟸   NM_001166448
- Peptide Label: isoform 6
- UniProtKB: Q9BY41 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001159894   ⟸   NM_001166422
- Peptide Label: isoform 5
- UniProtKB: A0A3B3IS93 (UniProtKB/TrEMBL)
- Sequence:
Histone deacetylase

Name Modeler Protein Id AA Range Protein Structure
AF-Q9BY41-F1-model_v2 AlphaFold Q9BY41 1-377 view protein structure

RGD ID:6808734
Promoter ID:HG_KWN:67240
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000340176,   ENST00000373556,   ENST00000373560,   ENST00000373561,   ENST00000373568,   ENST00000373571,   ENST00000373583,   ENST00000373589,   NM_001166418,   NM_001166420,   NM_001166448,   OTTHUMT00000057193,   OTTHUMT00000057198,   OTTHUMT00000057201,   OTTHUMT00000057204,   OTTHUMT00000318662,   OTTHUMT00000318663,   OTTHUMT00000318664,   OTTHUMT00000318665,   UC004EAW.2,   UC010NLK.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36X71,709,276 - 71,709,792 (-)MPROMDB
RGD ID:13627454
Promoter ID:EPDNEW_H29002
Type:initiation region
Name:HDAC8_1
Description:histone deacetylase 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X72,572,816 - 72,572,876EPDNEW


1 to 40 of 107 rows
Database
Acc Id
Source(s)
COSMIC HDAC8 COSMIC
Ensembl Genes ENSG00000147099 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000373554 ENTREZGENE
  ENST00000373554.6 UniProtKB/Swiss-Prot
  ENST00000373556 ENTREZGENE
  ENST00000373556.8 UniProtKB/Swiss-Prot
  ENST00000373559 ENTREZGENE
  ENST00000373559.8 UniProtKB/Swiss-Prot
  ENST00000373573 ENTREZGENE
  ENST00000373573.9 UniProtKB/Swiss-Prot
  ENST00000373583 ENTREZGENE
  ENST00000373589 ENTREZGENE
  ENST00000373589.9 UniProtKB/Swiss-Prot
  ENST00000415409 ENTREZGENE
  ENST00000439122 ENTREZGENE
  ENST00000439122.7 UniProtKB/Swiss-Prot
  ENST00000647594 ENTREZGENE
  ENST00000647654 ENTREZGENE
  ENST00000647886 ENTREZGENE
  ENST00000648139 ENTREZGENE
  ENST00000648834 ENTREZGENE
  ENST00000649116.1 UniProtKB/Swiss-Prot
  ENST00000650126 ENTREZGENE
  ENST00000650471 ENTREZGENE
Gene3D-CATH 3.40.800.20 UniProtKB/Swiss-Prot
GTEx ENSG00000147099 GTEx
HGNC ID HGNC:13315 ENTREZGENE
Human Proteome Map HDAC8 Human Proteome Map
InterPro HDAC_PDAC UniProtKB/Swiss-Prot
  His_deacetylse UniProtKB/Swiss-Prot
  His_deacetylse_1 UniProtKB/Swiss-Prot
  His_deacetylse_dom UniProtKB/Swiss-Prot
  His_deacetylse_dom_sf UniProtKB/Swiss-Prot
  Ureohydrolase_dom_sf UniProtKB/Swiss-Prot
KEGG Report hsa:55869 UniProtKB/Swiss-Prot
NCBI Gene HDAC8 ENTREZGENE
OMIM 300269 OMIM
PANTHER HISTONE DEACETYLASE 8 UniProtKB/Swiss-Prot
  HISTONE DEACETYLASE HDAC1-RELATED UniProtKB/Swiss-Prot
Pfam Hist_deacetyl UniProtKB/Swiss-Prot
1 to 40 of 107 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 HDAC8  histone deacetylase 8  WTS  Wilson-Turner X-linked mental retardation syndrome  Data merged from RGD:1342868 737654 PROVISIONAL