CACNA1A (calcium voltage-gated channel subunit alpha1 A) - Rat Genome Database

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Gene: CACNA1A (calcium voltage-gated channel subunit alpha1 A) Canis lupus familiaris
Analyze
Symbol: CACNA1A
Name: calcium voltage-gated channel subunit alpha1 A
RGD ID: 12383950
Description: ENCODES a protein that exhibits calmodulin binding (ortholog); high voltage-gated calcium channel activity (ortholog); voltage-gated calcium channel activity (ortholog); INVOLVED IN adult walking behavior (ortholog); behavioral response to pain (ortholog); calcium ion import (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Alternating Hemiplegia of Childhood 1 (ortholog); FOUND IN calyx of Held (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium channel, voltage-dependent, P/Q type, alpha 1A subunit; voltage-dependent P/Q-type calcium channel subunit alpha-1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,747,087 - 49,036,627 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2048,821,025 - 49,036,032 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,694,916 - 48,910,172 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,339,396 - 49,554,755 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,280,733 - 49,553,801 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,549,923 - 48,765,101 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,976,279 - 49,191,383 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,219,720 - 49,435,029 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Aicardi-Goutieres Syndrome 4  (ISO)
alpha-mannosidosis  (ISO)
Alternating Hemiplegia of Childhood 1  (ISO)
amyotrophic lateral sclerosis  (ISO)
Ataxia  (ISO)
attention deficit hyperactivity disorder  (ISO)
Auditory Neuropathy  (ISO)
autism spectrum disorder  (ISO)
autistic disorder  (ISO)
bone marrow disease  (ISO)
cerebellar ataxia  (ISO)
cerebral palsy  (ISO)
cerebral venous thrombosis  (ISO)
Charcot-Marie-Tooth disease dominant intermediate B  (ISO)
childhood absence epilepsy  (ISO)
childhood electroclinical syndrome  (ISO)
combined immunodeficiency  (ISO)
combined T cell and B cell immunodeficiency  (ISO)
developmental and epileptic encephalopathy 1  (ISO)
developmental and epileptic encephalopathy 2  (ISO)
developmental and epileptic encephalopathy 42  (ISO)
developmental and epileptic encephalopathy 52  (ISO)
Developmental Disabilities  (ISO)
disorder of sexual development  (ISO)
Dysarthria  (ISO)
epilepsy  (ISO)
episodic ataxia  (ISO)
episodic ataxia type 2  (ISO)
exfoliation syndrome  (ISO)
familial hemiplegic migraine  (ISO)
familial hemiplegic migraine 1  (ISO)
generalized dystonia  (ISO)
Generalized Epilepsy  (ISO)
genetic disease  (ISO)
glutaric acidemia I  (ISO)
intellectual disability  (ISO)
Lambert-Eaton myasthenic syndrome  (ISO)
learning disability  (ISO)
Marshall-Smith syndrome  (ISO)
migraine  (ISO)
migraine with aura  (ISO)
Muscle Spasticity  (ISO)
Muscle Weakness  (ISO)
myelitis  (ISO)
myoclonic-atonic epilepsy  (ISO)
Nervous System Malformations  (ISO)
neurodevelopmental disorder with hypotonia, language delay, and skeletal defects with or without seizures  (ISO)
Neurodevelopmental Disorders  (ISO)
neurogenic bladder  (ISO)
Neurologic Gait Disorders  (ISO)
progressive bulbar palsy  (ISO)
spastic ataxia  (ISO)
Spastic Paraparesis  (ISO)
spinocerebellar ataxia type 6  (ISO)
Spinocerebellar Ataxias  (ISO)
Sporadic Hemiplegic Migraine  (ISO)
subependymal giant cell astrocytoma  (ISO)
sudden infant death syndrome  (ISO)
temporal lobe epilepsy  (ISO)
Tremor  (ISO)
vascular dementia  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adult walking behavior  (ISO)
behavioral response to pain  (ISO)
calcium ion import  (ISO)
calcium ion import across plasma membrane  (IBA)
calcium ion transmembrane transport  (IEA)
calcium ion transport  (ISO)
calcium ion-regulated exocytosis of neurotransmitter  (ISO)
calcium-ion regulated exocytosis  (ISO)
cellular response to amyloid-beta  (IEA)
central nervous system neuron differentiation  (ISO)
cerebellar molecular layer development  (ISO)
cerebellar Purkinje cell differentiation  (ISO)
cerebellar Purkinje cell layer development  (ISO)
cerebellum maturation  (ISO)
chemical synaptic transmission  (ISO)
dendrite morphogenesis  (ISO)
establishment of localization in cell  (ISO)
gamma-aminobutyric acid secretion  (ISO)
gamma-aminobutyric acid signaling pathway  (ISO)
glucose homeostasis  (ISO)
hormone biosynthetic process  (ISO)
intracellular chloride ion homeostasis  (ISO)
membrane depolarization  (ISO)
modulation of chemical synaptic transmission  (IEA)
musculoskeletal movement, spinal reflex action  (ISO)
negative regulation of hormone biosynthetic process  (ISO)
negative regulation of neuron apoptotic process  (ISO)
nervous system process  (ISO)
neuromuscular process  (ISO)
neuromuscular process controlling balance  (ISO)
neuromuscular synaptic transmission  (ISO)
neuron apoptotic process  (ISO)
neuron cellular homeostasis  (ISO)
neuron-neuron synaptic transmission  (ISO)
positive regulation of cytosolic calcium ion concentration  (IEA,ISO)
receptor clustering  (ISO)
regulation of acetylcholine secretion, neurotransmission  (ISO)
regulation of axonogenesis  (ISO)
regulation of calcium ion-dependent exocytosis  (ISO)
regulation of hormone levels  (ISO)
regulation of membrane potential  (ISO)
regulation of sulfur amino acid metabolic process  (ISO)
regulation of voltage-gated calcium channel activity  (ISO)
response to amyloid-beta  (IEA)
response to pain  (ISO)
rhythmic synaptic transmission  (ISO)
spinal cord motor neuron differentiation  (ISO)
synapse assembly  (ISO)
synaptic transmission, GABAergic  (ISO)
synaptic transmission, glutamatergic  (ISO)
transmission of nerve impulse  (ISO)
vestibular nucleus development  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
alfentanil pharmacodynamics pathway  (ISO)
bupivacaine pharmacodynamics pathway  (ISO)
buprenorphine pharmacodynamics pathway   (ISO)
calcium transport pathway   (ISO)
calcium/calcium-mediated signaling pathway  (ISO)
chloroprocaine pharmacodynamics pathway  (ISO)
citalopram pharmacodynamics pathway  (ISO)
cocaine pharmacodynamics pathway  (ISO)
codeine and morphine pharmacodynamics pathway  (ISO)
desipramine pharmacodynamics pathway  (ISO)
diphenoxylate pharmacodynamics pathway  (ISO)
escitalopram pharmacodynamics pathway  (ISO)
ethylmorphine pharmacodynamics pathway  (ISO)
fentanyl pharmacodynamics pathway  (ISO)
fluoxetine pharmacodynamics pathway  (ISO)
gliclazide pharmacodynamics pathway  (ISO)
glyburide pharmacodynamics pathway  (ISO)
heroin pharmacodynamics pathway  (ISO)
hydrocodone pharmacodynamics pathway  (ISO)
hydromorphone pharmacodynamics pathway  (ISO)
imipramine pharmacodynamics pathway   (ISO)
insulin secretion pathway  (ISO)
levacetylmethadol pharmacodynamics pathway  (ISO)
levobupivacaine phgarmacodynamics pathway  (ISO)
levorphanol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
mepivacaine pharmacodynamics pathway  (ISO)
methadone pharmacodynamics pathway  (ISO)
nalbuphine pharmacodynamics pathway  (ISO)
naloxone pharmacodynamics pathway  (ISO)
naltrexone pharmacodynamics pathway  (ISO)
nicotine pharmacodynamics pathway  (ISO)
oxybuprocaine pharmacodynamics pathway  (ISO)
oxycodone pharmacodynamics pathway  (ISO)
oxymorphone pharmacodynamics pathway  (ISO)
pentazocine pharmacodynamics pathway   (ISO)
potassium channel inhibitors pharmacodynamics pathway  (ISO)
prilocaine pharmacodynamics pathway  (ISO)
procaine pharmacodynamics pathway  (ISO)
remifentanil pharmacodynamics pathway  (ISO)
ropivacaine pharmacodynamics pathway  (ISO)
tramadol pharmacodynamics pathway  (ISO)

References
Additional References at PubMed
PMID:16097083   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CACNA1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,747,087 - 49,036,627 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2048,821,025 - 49,036,032 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,694,916 - 48,910,172 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,339,396 - 49,554,755 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,280,733 - 49,553,801 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,549,923 - 48,765,101 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,976,279 - 49,191,383 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,219,720 - 49,435,029 (+)NCBIUU_Cfam_GSD_1.0
CACNA1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381913,206,442 - 13,506,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1913,206,442 - 13,624,489 (-)EnsemblGRCh38hg38GRCh38
GRCh371913,317,256 - 13,617,293 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,178,256 - 13,478,274 (-)NCBINCBI36Build 36hg18NCBI36
Build 341913,179,114 - 13,478,317NCBI
Celera1913,207,639 - 13,507,772 (-)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,889,634 - 13,189,171 (-)NCBIHuRef
CHM1_11913,318,256 - 13,618,198 (-)NCBICHM1_1
T2T-CHM13v2.01913,331,719 - 13,631,840 (-)NCBIT2T-CHM13v2.0
Cacna1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,065,257 - 85,366,880 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,065,268 - 85,366,875 (+)EnsemblGRCm39 Ensembl
GRCm38884,338,631 - 84,640,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,338,639 - 84,640,246 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,939,263 - 87,164,148 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,305,469 - 87,530,351 (+)NCBIMGSCv36mm8
Celera888,715,985 - 88,942,662 (+)NCBICelera
Cytogenetic Map8C2- C3NCBI
cM Map840.95NCBI
Cacna1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,425,560 - 40,724,810 (-)NCBIGRCr8
mRatBN7.21923,520,741 - 23,819,971 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,520,741 - 23,823,225 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1930,343,968 - 30,567,151 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,998,339 - 31,221,535 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,221,032 - 33,444,209 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,453,236 - 25,749,550 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,526,751 - 25,749,550 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,502,533 - 36,727,039 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,188,170 - 25,424,495 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11925,194,294 - 25,429,321 (-)NCBI
Celera1923,074,249 - 23,295,970 (-)NCBICelera
Cytogenetic Map19q11NCBI
Cacna1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,183,442 - 32,400,595 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,182,536 - 32,457,511 (-)NCBIChiLan1.0ChiLan1.0
CACNA1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22018,136,613 - 18,555,581 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11917,137,272 - 17,556,602 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,769,586 - 13,189,022 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11913,506,232 - 13,804,815 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,507,102 - 13,804,729 (-)Ensemblpanpan1.1panPan2
LOC101960999
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,078,478 - 208,143,320 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,192,610 - 2,392,638 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,201,606 - 2,269,625 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,514,509 - 65,871,182 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,491,784 - 65,871,068 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,921,411 - 66,176,189 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,883,353 - 12,307,023 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660747,403,914 - 7,900,327 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901708,234 - 932,643 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901707,322 - 932,658 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CACNA1A
2661 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014121804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000026809   ⟹   ENSCAFP00000024912
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2048,821,025 - 49,036,032 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000063287   ⟹   ENSCAFP00000051500
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2048,821,025 - 49,036,032 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000065563   ⟹   ENSCAFP00000043775
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2048,821,025 - 49,036,032 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000066427   ⟹   ENSCAFP00000059375
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2048,821,025 - 49,036,032 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053512   ⟹   ENSCAFP00845042045
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2049,280,733 - 49,553,086 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053644   ⟹   ENSCAFP00845042153
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2049,339,549 - 49,553,801 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053679   ⟹   ENSCAFP00845042177
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2049,339,549 - 49,553,801 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053694   ⟹   ENSCAFP00845042191
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2049,339,549 - 49,553,801 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053803   ⟹   ENSCAFP00845042285
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2049,339,549 - 49,553,801 (+)Ensembl
RefSeq Acc Id: XM_038428418   ⟹   XP_038284346
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02049,339,396 - 49,554,755 (+)NCBI
RefSeq Acc Id: XM_038428419   ⟹   XP_038284347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02049,339,396 - 49,553,801 (+)NCBI
RefSeq Acc Id: XM_038428420   ⟹   XP_038284348
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02049,339,397 - 49,553,801 (+)NCBI
RefSeq Acc Id: XM_038428421   ⟹   XP_038284349
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02049,339,397 - 49,553,801 (+)NCBI
RefSeq Acc Id: XM_038428422   ⟹   XP_038284350
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02049,339,549 - 49,553,801 (+)NCBI
RefSeq Acc Id: XM_038428423   ⟹   XP_038284351
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02049,339,400 - 49,553,209 (+)NCBI
RefSeq Acc Id: XM_038455095   ⟹   XP_038311023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2048,694,916 - 48,910,172 (+)NCBI
RefSeq Acc Id: XM_038455096   ⟹   XP_038311024
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2048,694,916 - 48,909,218 (+)NCBI
RefSeq Acc Id: XM_038455097   ⟹   XP_038311025
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2048,694,917 - 48,909,218 (+)NCBI
RefSeq Acc Id: XM_038455099   ⟹   XP_038311027
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2048,694,917 - 48,909,218 (+)NCBI
RefSeq Acc Id: XM_038455100   ⟹   XP_038311028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2048,695,069 - 48,909,218 (+)NCBI
RefSeq Acc Id: XM_038455101   ⟹   XP_038311029
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2048,694,920 - 48,908,629 (+)NCBI
RefSeq Acc Id: XM_038504062   ⟹   XP_038359990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12048,549,924 - 48,765,101 (+)NCBI
RefSeq Acc Id: XM_038504063   ⟹   XP_038359991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12048,549,923 - 48,765,101 (+)NCBI
RefSeq Acc Id: XM_038567087   ⟹   XP_038423015
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02049,219,720 - 49,435,029 (+)NCBI
RefSeq Acc Id: XM_038567088   ⟹   XP_038423016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02049,219,720 - 49,434,075 (+)NCBI
RefSeq Acc Id: XM_038567089   ⟹   XP_038423017
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02049,219,721 - 49,434,075 (+)NCBI
RefSeq Acc Id: XM_038567090   ⟹   XP_038423018
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02049,219,721 - 49,434,075 (+)NCBI
RefSeq Acc Id: XM_038567091   ⟹   XP_038423019
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02049,219,873 - 49,434,075 (+)NCBI
RefSeq Acc Id: XM_038567092   ⟹   XP_038423020
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02049,219,724 - 49,433,486 (+)NCBI
RefSeq Acc Id: XM_038631231   ⟹   XP_038487159
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02048,976,279 - 49,191,383 (+)NCBI
RefSeq Acc Id: XM_038631232   ⟹   XP_038487160
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02048,976,279 - 49,190,428 (+)NCBI
RefSeq Acc Id: XM_038631233   ⟹   XP_038487161
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02048,976,280 - 49,190,428 (+)NCBI
RefSeq Acc Id: XM_038631234   ⟹   XP_038487162
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02048,976,280 - 49,190,428 (+)NCBI
RefSeq Acc Id: XM_038631235   ⟹   XP_038487163
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02048,976,432 - 49,190,428 (+)NCBI
RefSeq Acc Id: XM_038631236   ⟹   XP_038487164
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02048,976,283 - 49,189,836 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038284346 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284347 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284348 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284349 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284350 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284351 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311023 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311024 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311025 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311027 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311028 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311029 (Get FASTA)   NCBI Sequence Viewer  
  XP_038359990 (Get FASTA)   NCBI Sequence Viewer  
  XP_038359991 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423015 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423016 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423017 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423018 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423019 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423020 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487159 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487160 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487161 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487162 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487163 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487164 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000024912.5
  ENSCAFP00000043775.2
  ENSCAFP00000051500.2
  ENSCAFP00000059375.2
  ENSCAFP00000068260.1
  ENSCAFP00030026460.1
  ENSCAFP00030026993.1
  ENSCAFP00030027252.1
  ENSCAFP00030027443.1
  ENSCAFP00030027596.1
  ENSCAFP00040036608.1
  ENSCAFP00040036844.1
  ENSCAFP00040036892.1
  ENSCAFP00040036985.1
  ENSCAFP00040037052.1
  ENSCAFP00845042045
  ENSCAFP00845042045.1
  ENSCAFP00845042153
  ENSCAFP00845042153.1
  ENSCAFP00845042177
  ENSCAFP00845042177.1
  ENSCAFP00845042191
  ENSCAFP00845042191.1
  ENSCAFP00845042285.1
Ensembl Acc Id: ENSCAFP00000051500   ⟸   ENSCAFT00000063287
Ensembl Acc Id: ENSCAFP00000059375   ⟸   ENSCAFT00000066427
Ensembl Acc Id: ENSCAFP00000043775   ⟸   ENSCAFT00000065563
Ensembl Acc Id: ENSCAFP00000024912   ⟸   ENSCAFT00000026809
RefSeq Acc Id: XP_038359991   ⟸   XM_038504063
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038359990   ⟸   XM_038504062
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038487159   ⟸   XM_038631231
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038487160   ⟸   XM_038631232
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038487161   ⟸   XM_038631233
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038487162   ⟸   XM_038631234
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038487164   ⟸   XM_038631236
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038487163   ⟸   XM_038631235
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038284346   ⟸   XM_038428418
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NLS5 (UniProtKB/TrEMBL),   A0A8I3Q3U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284347   ⟸   XM_038428419
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NLS5 (UniProtKB/TrEMBL),   A0A8I3Q3U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284348   ⟸   XM_038428420
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RM22 (UniProtKB/TrEMBL),   A0A8I3Q3W7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284349   ⟸   XM_038428421
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NLS5 (UniProtKB/TrEMBL),   A0A8I3Q3U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284351   ⟸   XM_038428423
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NKL2 (UniProtKB/TrEMBL),   A0A8I3Q3N1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284350   ⟸   XM_038428422
- Peptide Label: isoform X5
- UniProtKB: A0A8C0NLS5 (UniProtKB/TrEMBL),   A0A8I3Q3U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311023   ⟸   XM_038455095
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SL76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311024   ⟸   XM_038455096
- Peptide Label: isoform X2
- UniProtKB: A0A8P0SL76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311025   ⟸   XM_038455097
- Peptide Label: isoform X3
- UniProtKB: A0A8P0P8F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311027   ⟸   XM_038455099
- Peptide Label: isoform X4
- UniProtKB: A0A8P0SL76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311029   ⟸   XM_038455101
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NKL2 (UniProtKB/TrEMBL),   A0A8I3Q3N1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311028   ⟸   XM_038455100
- Peptide Label: isoform X5
- UniProtKB: A0A8P0SL76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423015   ⟸   XM_038567087
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SL76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423016   ⟸   XM_038567088
- Peptide Label: isoform X2
- UniProtKB: A0A8P0SL76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423017   ⟸   XM_038567089
- Peptide Label: isoform X3
- UniProtKB: A0A8P0P8F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423018   ⟸   XM_038567090
- Peptide Label: isoform X4
- UniProtKB: A0A8P0SL76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423020   ⟸   XM_038567092
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NKL2 (UniProtKB/TrEMBL),   A0A8I3Q3N1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423019   ⟸   XM_038567091
- Peptide Label: isoform X5
- UniProtKB: A0A8P0SL76 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845042285   ⟸   ENSCAFT00845053803
Ensembl Acc Id: ENSCAFP00845042045   ⟸   ENSCAFT00845053512
Ensembl Acc Id: ENSCAFP00845042177   ⟸   ENSCAFT00845053679
Ensembl Acc Id: ENSCAFP00845042191   ⟸   ENSCAFT00845053694
Ensembl Acc Id: ENSCAFP00845042153   ⟸   ENSCAFT00845053644
Protein Domains
Voltage-dependent calcium channel alpha-1 subunit


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016897 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030011426 UniProtKB/TrEMBL
  ENSCAFG00040021024 UniProtKB/TrEMBL
  ENSCAFG00845028149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000026809.5 UniProtKB/TrEMBL
  ENSCAFT00000063287.2 UniProtKB/TrEMBL
  ENSCAFT00000065563.2 UniProtKB/TrEMBL
  ENSCAFT00000066427.2 UniProtKB/TrEMBL
  ENSCAFT00000097407.1 UniProtKB/TrEMBL
  ENSCAFT00030030348.1 UniProtKB/TrEMBL
  ENSCAFT00030030944.1 UniProtKB/TrEMBL
  ENSCAFT00030031229.1 UniProtKB/TrEMBL
  ENSCAFT00030031459.1 UniProtKB/TrEMBL
  ENSCAFT00030031640.1 UniProtKB/TrEMBL
  ENSCAFT00040041974.1 UniProtKB/TrEMBL
  ENSCAFT00040042237.1 UniProtKB/TrEMBL
  ENSCAFT00040042294.1 UniProtKB/TrEMBL
  ENSCAFT00040042398.1 UniProtKB/TrEMBL
  ENSCAFT00040042477.1 UniProtKB/TrEMBL
  ENSCAFT00845053512 ENTREZGENE
  ENSCAFT00845053512.1 UniProtKB/TrEMBL
  ENSCAFT00845053644 ENTREZGENE
  ENSCAFT00845053644.1 UniProtKB/TrEMBL
  ENSCAFT00845053679 ENTREZGENE
  ENSCAFT00845053679.1 UniProtKB/TrEMBL
  ENSCAFT00845053694 ENTREZGENE
  ENSCAFT00845053694.1 UniProtKB/TrEMBL
  ENSCAFT00845053803.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
  6.10.250.2180 UniProtKB/TrEMBL
  6.10.250.2500 UniProtKB/TrEMBL
InterPro CACNA1A UniProtKB/TrEMBL
  GPHH_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  VDCC_a1su_IQ UniProtKB/TrEMBL
  VDCC_alpha-1_subunit UniProtKB/TrEMBL
  VDCCAlpha1 UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene CACNA1A ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT P/Q-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1A UniProtKB/TrEMBL
Pfam Ca_chan_IQ UniProtKB/TrEMBL
  GPHH UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS CACHANNEL UniProtKB/TrEMBL
  PQVDCCALPHA1 UniProtKB/TrEMBL
SMART Ca_chan_IQ UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A8C0NJK2_CANLF UniProtKB/TrEMBL
  A0A8C0NKL2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NLS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NUU8_CANLF UniProtKB/TrEMBL
  A0A8C0RM22 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TFT7_CANLF UniProtKB/TrEMBL
  A0A8C0TK92_CANLF UniProtKB/TrEMBL
  A0A8C0TKD6_CANLF UniProtKB/TrEMBL
  A0A8C0TMV7_CANLF UniProtKB/TrEMBL
  A0A8C0Z4Y4_CANLF UniProtKB/TrEMBL
  A0A8I3Q3N1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q3U9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q3W7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q442_CANLF UniProtKB/TrEMBL
  A0A8I3Q608_CANLF UniProtKB/TrEMBL
  A0A8P0NU68_CANLF UniProtKB/TrEMBL
  A0A8P0P165_CANLF UniProtKB/TrEMBL
  A0A8P0P8F1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SL76 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38631 ENTREZGENE