SLC17A8 (solute carrier family 17 member 8) - Rat Genome Database

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Gene: SLC17A8 (solute carrier family 17 member 8) Canis lupus familiaris
Analyze
Symbol: SLC17A8
Name: solute carrier family 17 member 8
RGD ID: 12201045
Description: ENCODES a protein that exhibits chloride channel activity (ortholog); INVOLVED IN cochlea development (ortholog); L-glutamate import (ortholog); L-glutamate transmembrane transport (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness 25 (ortholog); autosomal recessive nonsyndromic deafness 9 (ortholog); cochlear disease (ortholog); FOUND IN apical dendrite (ortholog); axon terminus (ortholog); basal dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8; vesicular glutamate transporter 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11539,443,790 - 39,489,988 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1539,443,518 - 39,486,595 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1539,811,154 - 39,867,358 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01540,095,889 - 40,152,069 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1540,106,972 - 40,150,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11539,364,747 - 39,409,505 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01539,459,835 - 39,516,030 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01539,733,977 - 39,790,150 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC17A8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11539,443,790 - 39,489,988 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1539,443,518 - 39,486,595 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1539,811,154 - 39,867,358 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01540,095,889 - 40,152,069 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1540,106,972 - 40,150,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11539,364,747 - 39,409,505 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01539,459,835 - 39,516,030 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01539,733,977 - 39,790,150 (+)NCBIUU_Cfam_GSD_1.0
SLC17A8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812100,357,074 - 100,422,055 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12100,357,074 - 100,422,055 (+)EnsemblGRCh38hg38GRCh38
GRCh3712100,750,852 - 100,815,833 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361299,275,125 - 99,339,968 (+)NCBINCBI36Build 36hg18NCBI36
Build 341299,253,461 - 99,318,305NCBI
Celera12100,416,121 - 100,481,106 (+)NCBICelera
Cytogenetic Map12q23.1NCBI
HuRef1297,811,908 - 97,876,895 (+)NCBIHuRef
CHM1_112100,716,885 - 100,781,879 (+)NCBICHM1_1
T2T-CHM13v2.012100,318,500 - 100,383,494 (+)NCBIT2T-CHM13v2.0
Slc17a8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391089,409,882 - 89,457,111 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1089,409,882 - 89,457,115 (-)EnsemblGRCm39 Ensembl
GRCm381089,574,020 - 89,621,249 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1089,574,020 - 89,621,253 (-)EnsemblGRCm38mm10GRCm38
MGSCv371089,036,765 - 89,083,994 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361089,003,819 - 89,051,048 (-)NCBIMGSCv36mm8
Celera1091,564,557 - 91,621,586 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1044.99NCBI
Slc17a8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8725,881,557 - 25,936,837 (-)NCBIGRCr8
mRatBN7.2723,994,212 - 24,049,498 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl723,994,217 - 24,048,079 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx725,988,747 - 26,042,586 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0728,151,175 - 28,205,018 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0727,928,480 - 27,982,327 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0730,215,231 - 30,274,993 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl730,216,104 - 30,274,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0730,314,804 - 30,371,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4726,361,488 - 26,413,820 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1726,381,758 - 26,434,091 (-)NCBI
Celera721,139,735 - 21,191,778 (-)NCBICelera
Cytogenetic Map7q13NCBI
Slc17a8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540536,063,688 - 36,115,312 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540536,063,688 - 36,115,312 (+)NCBIChiLan1.0ChiLan1.0
SLC17A8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210108,418,745 - 108,485,542 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112108,415,176 - 108,481,943 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01297,935,177 - 98,001,240 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112101,342,113 - 101,405,844 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12101,342,113 - 101,405,844 (+)Ensemblpanpan1.1panPan2
Slc17a8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494520,425,587 - 20,475,772 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649213,435,848 - 13,486,169 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649213,436,136 - 13,486,173 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC17A8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl583,741,715 - 83,800,808 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1583,741,641 - 83,809,472 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2587,686,292 - 87,696,625 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC17A8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11195,673,205 - 95,740,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1195,674,195 - 95,739,040 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037149,304,943 - 149,371,896 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc17a8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247507,345,557 - 7,396,154 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247507,345,411 - 7,396,445 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC17A8
590 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 4 8
Below cutoff 5 4 22 6 6 6 6 6 8 10 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014119266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038496383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000010950   ⟹   ENSCAFP00000010148
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1539,443,518 - 39,486,595 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845011247   ⟹   ENSCAFP00845008773
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1540,106,972 - 40,150,689 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845011276   ⟹   ENSCAFP00845008796
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1540,106,972 - 40,150,689 (+)Ensembl
RefSeq Acc Id: XM_038450068   ⟹   XP_038305996
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1539,822,496 - 39,867,358 (+)NCBI
RefSeq Acc Id: XM_038450074   ⟹   XP_038306002
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1539,822,496 - 39,867,358 (+)NCBI
RefSeq Acc Id: XM_038450082   ⟹   XP_038306010
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1539,811,154 - 39,867,358 (+)NCBI
RefSeq Acc Id: XM_038496383   ⟹   XP_038352311
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11539,364,747 - 39,409,505 (+)NCBI
RefSeq Acc Id: XM_038558784   ⟹   XP_038414712
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01539,745,311 - 39,790,150 (+)NCBI
RefSeq Acc Id: XM_038558785   ⟹   XP_038414713
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01539,745,311 - 39,790,150 (+)NCBI
RefSeq Acc Id: XM_038558786   ⟹   XP_038414714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01539,733,977 - 39,790,150 (+)NCBI
RefSeq Acc Id: XM_038622708   ⟹   XP_038478636
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01539,471,163 - 39,516,030 (+)NCBI
RefSeq Acc Id: XM_038622709   ⟹   XP_038478637
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01539,471,163 - 39,516,030 (+)NCBI
RefSeq Acc Id: XM_038622710   ⟹   XP_038478638
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01539,459,835 - 39,516,030 (+)NCBI
RefSeq Acc Id: XM_038688373   ⟹   XP_038544301
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01540,107,226 - 40,152,069 (+)NCBI
RefSeq Acc Id: XM_038688374   ⟹   XP_038544302
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01540,107,226 - 40,152,069 (+)NCBI
RefSeq Acc Id: XM_038688375   ⟹   XP_038544303
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01540,095,889 - 40,152,069 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000010148   ⟸   ENSCAFT00000010950
RefSeq Acc Id: XP_038352311   ⟸   XM_038496383
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038478638   ⟸   XM_038622710
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038478636   ⟸   XM_038622708
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038478637   ⟸   XM_038622709
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038544303   ⟸   XM_038688375
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NLX3 (UniProtKB/TrEMBL),   A0A8C0S5W5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038544301   ⟸   XM_038688373
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LN61 (UniProtKB/TrEMBL),   A0A8I3N2M8 (UniProtKB/TrEMBL),   A0A8P0N9I7 (UniProtKB/TrEMBL),   A0A8C0NLX3 (UniProtKB/TrEMBL),   A0A8C0S5W5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038544302   ⟸   XM_038688374
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PR82 (UniProtKB/TrEMBL),   A0A8C0NLX3 (UniProtKB/TrEMBL),   A0A8C0S5W5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306010   ⟸   XM_038450082
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NLX3 (UniProtKB/TrEMBL),   A0A8C0S5W5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305996   ⟸   XM_038450068
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LN61 (UniProtKB/TrEMBL),   A0A8I3N2M8 (UniProtKB/TrEMBL),   A0A8P0N9I7 (UniProtKB/TrEMBL),   A0A8C0NLX3 (UniProtKB/TrEMBL),   A0A8C0S5W5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306002   ⟸   XM_038450074
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PR82 (UniProtKB/TrEMBL),   A0A8C0NLX3 (UniProtKB/TrEMBL),   A0A8C0S5W5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414714   ⟸   XM_038558786
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NLX3 (UniProtKB/TrEMBL),   A0A8C0S5W5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414712   ⟸   XM_038558784
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LN61 (UniProtKB/TrEMBL),   A0A8C0NLX3 (UniProtKB/TrEMBL),   A0A8C0S5W5 (UniProtKB/TrEMBL),   A0A8I3N2M8 (UniProtKB/TrEMBL),   A0A8P0N9I7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414713   ⟸   XM_038558785
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NLX3 (UniProtKB/TrEMBL),   A0A8C0S5W5 (UniProtKB/TrEMBL),   A0A8P0PR82 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845008796   ⟸   ENSCAFT00845011276
RefSeq Acc Id: ENSCAFP00845008773   ⟸   ENSCAFT00845011247
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006786 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016557 UniProtKB/TrEMBL
  ENSCAFG00040009953 UniProtKB/TrEMBL
  ENSCAFG00845006328 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010950.5 UniProtKB/TrEMBL
  ENSCAFT00000101511.1 UniProtKB/TrEMBL
  ENSCAFT00000103134.1 UniProtKB/TrEMBL
  ENSCAFT00030030507.1 UniProtKB/TrEMBL
  ENSCAFT00040018803.1 UniProtKB/TrEMBL
  ENSCAFT00845011247 ENTREZGENE
  ENSCAFT00845011247.1 UniProtKB/TrEMBL
  ENSCAFT00845011276.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene SLC17A8 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 17 UniProtKB/TrEMBL
  VESICULAR GLUTAMATE TRANSPORTER 3 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A8C0LN61 ENTREZGENE
  A0A8C0NLX3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S5W5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N2M8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RUP3_CANLF UniProtKB/TrEMBL
  A0A8P0N9I7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PR16_CANLF UniProtKB/TrEMBL
  A0A8P0PR82 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46253 ENTREZGENE