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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:small intestine cancer
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Accession:DOID:10154 term browser browse the term
Definition:An intestinal cancer that is located_in the small intestine. (DO)
Synonyms:exact_synonym: malignant small intestine neoplasm
 xref: GARD:9385;   ICD10CM:C17;   ICD9CM:152.9;   MONDO:0000956;   NCI:C7523
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
adult spinal cord ependymoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd6 chromodomain helicase DNA binding protein 6 ISO ClinVar Annotator: match by term: Adult spinal cord ependymoma ClinVar NCBI chr 3:149,596,509...149,757,765
Ensembl chr 3:149,596,509...149,757,755 		JBrowse link
duodenal gastrinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Men1 menin 1 ISO associated with Neuroendocrine Tumors; DNA:loss of heterozygosity: : RGD PMID:17135306 RGD:2317341 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871 		JBrowse link
duodenum adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Duodenal adenocarcinoma ClinVar PMID:24033266 PMID:25741868 PMID:26530882 PMID:28195569 PMID:28492532 More... NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
Enteropathy-Associated T-Cell Lymphoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO DNA:mutations:multiple (human) RGD PMID:27600764 RGD:150429643 NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29200404 NCBI chr10:85,704,841...85,775,856
Ensembl chr10:85,705,670...85,775,668 		JBrowse link
small intestine adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gstm1 glutathione S-transferase mu 1 ISO RGD PMID:12940438 RGD:14700963 NCBI chr 2:195,649,845...195,655,402
Ensembl chr 2:195,649,845...195,655,411 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 ISO RGD PMID:19014680 RGD:13464351 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 ISO RGD PMID:19014680 RGD:13464351 NCBI chr 7:8,590,729...8,610,279
Ensembl chr 7:8,580,905...8,610,243 		JBrowse link
small intestine carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A exacerbates ISO protein:decreased expression:small intestine (human) RGD PMID:25400081 RGD:126781719 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18969
    disease of anatomical entity 18248
      gastrointestinal system disease 7094
        Gastrointestinal Neoplasms 3711
          gastrointestinal system cancer 2909
            intestinal cancer 1012
              small intestine cancer 9
                duodenum cancer + 2
                ileum cancer + 0
                jejunal cancer + 0
                small intestinal L-cell glucagon-like peptide producing tumor 0
                small intestinal sarcoma + 0
                small intestinal vasoactive intestinal peptide producing tumor 0
                small intestine carcinoid neuroendocrine tumor 0
                small intestine carcinoma + 6
                small intestine lymphoma + 2
Path 2
Term Annotations click to browse term
  disease 18969
    disease of cellular proliferation 7691
      Neoplasms by Site 7144
        Digestive System Neoplasms 3836
          Gastrointestinal Neoplasms 3711
            gastrointestinal system cancer 2909
              intestinal cancer 1012
                small intestine cancer 9
                  duodenum cancer + 2
                  ileum cancer + 0
                  jejunal cancer + 0
                  small intestinal L-cell glucagon-like peptide producing tumor 0
                  small intestinal sarcoma + 0
                  small intestinal vasoactive intestinal peptide producing tumor 0
                  small intestine carcinoid neuroendocrine tumor 0
                  small intestine carcinoma + 6
                  small intestine lymphoma + 2
paths to the root