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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:small intestine carcinoma
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Accession:DOID:4907 term browser browse the term
Definition:A small intestine cancer that develops from epithelial cells and is located_in the small intestine. (DO)
Synonyms:exact_synonym: small intestinal carcinoma
 related_synonym: cancer of the small bowel;   small bowel cancer
 xref: NCI:C7724
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
 
small intestine carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A exacerbates ISO protein:decreased expression:small intestine (human) RGD PMID:25400081 RGD:126781719 NCBI chr 5:145,908,181...145,981,609 JBrowse link
adult spinal cord ependymoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd6 chromodomain helicase DNA binding protein 6 ISO ClinVar Annotator: match by term: Adult Spinal Cord Ependymoma ClinVar NCBI chr 3:149,596,509...149,757,765 JBrowse link
duodenum adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Duodenal adenocarcinoma ClinVar PMID:24033266 PMID:25741868 PMID:26530882 PMID:28195569 PMID:28492532 PMID:30111351 PMID:30833958 NCBI chr18:25,828,558...25,925,511 JBrowse link
small intestine adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gstm1 glutathione S-transferase mu 1 ISO RGD PMID:12940438 RGD:14700963 NCBI chr 2:195,649,845...195,655,402 JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 ISO RGD PMID:19014680 RGD:13464351 NCBI chr 8:64,683,449...64,754,900 JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 ISO RGD PMID:19014680 RGD:13464351 NCBI chr 7:8,590,729...8,610,279 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17160
    disease of cellular proliferation 6949
      Neoplasms by Histologic Type 4766
        cell type cancer 3396
          carcinoma 2914
            small intestine carcinoma 6
              adult spinal cord ependymoma 1
              ampulla of Vater carcinoma + 0
              small intestine adenocarcinoma + 4
Path 2
Term Annotations click to browse term
  disease 17160
    disease of anatomical entity 16500
      gastrointestinal system disease 6063
        Gastrointestinal Diseases 4147
          intestinal disease 2441
            Intestinal Neoplasms 1518
              intestinal cancer 752
                small intestine cancer 7
                  small intestine carcinoma 6
                    adult spinal cord ependymoma 1
                    ampulla of Vater carcinoma + 0
                    small intestine adenocarcinoma + 4
paths to the root