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ONTOLOGY REPORT - ANNOTATIONS


Term:phagophore assembly site membrane
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Accession:GO:0034045 term browser browse the term
Definition:A cellular membrane associated with the phagophore assembly site.
Synonyms:exact_synonym: PAS membrane
 narrow_synonym: pre-autophagosomal structure membrane
 related_synonym: isolation membrane;   phagophore


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phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 part_of
is_active_in
located_in
IBA
ISO
PMID:21873635
(MGI:2137756|PMID:11266458)
RGD PMID:11266458, PMID:21873635, PMID:21873635 MGI:2137756, RGD:13792537, RGD:13792537 NCBI chr18:40,721,799...40,732,143
Ensembl chr18:40,721,800...40,732,126
JBrowse link
G Atg14 autophagy related 14 located_in ISO (PMID:19270696) RGD PMID:19270696 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753
JBrowse link
G Atg2a autophagy related 2A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:221,612,584...221,632,291
Ensembl chr 1:221,612,584...221,632,267
JBrowse link
G Atg2b autophagy related 2B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:129,449,451...129,519,599
Ensembl chr 6:129,449,449...129,509,720
JBrowse link
G Atg5 autophagy related 5 located_in
is_active_in
part_of
IEA
IBA
ISO
GO_REF:0000044
PMID:21873635
(MGI:2137756|PMID:11266458), (MGI:5476569|PMID:23455425)
UniProt
RGD
PMID:11266458 PMID:23455425, PMID:21873635, PMID:21873635 GO_REF:0000044 MGI:2137756 MGI:5476569, RGD:13792537, RGD:13792537 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140
JBrowse link
G LOC100363782 RAB1B, member RAS oncogene family-like located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 1:220,480,834...220,491,469 JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in ISO
IEA
(PMID:20545908)
GO_REF:0000107
RGD
Ensembl
PMID:20545908 GO_REF:0000107 NCBI chr 1:220,483,529...220,491,469
Ensembl chr 1:220,480,834...220,491,469
JBrowse link
G Rab1b-ps1 RAB1B, member RAS oncogene family, pseudogene 1 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:220,480,828...220,491,456
Ensembl chr 1:220,480,834...220,491,469
JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in ISO (MGI:5586797|PMID:19956673) RGD PMID:19956673 MGI:5586797 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 part_of
is_active_in
located_in
IBA
ISO
PMID:21873635
(MGI:3796758|PMID:18443221)
RGD PMID:18443221, PMID:21873635, PMID:21873635 MGI:3796758, RGD:13792537, RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341
JBrowse link
G Stbd1 starch binding domain 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:16,976,355...16,979,760
Ensembl chr14:16,976,356...16,979,760
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in
is_active_in
ISO
IBA
(PMID:18936157)
PMID:21873635
(MGI:3796758|PMID:18443221)
RGD PMID:18443221 PMID:18936157, PMID:21873635 MGI:3796758, RGD:13792537 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 located_in
is_active_in
ISO
IBA
(PMID:18936157)
PMID:21873635
(MGI:3796758|PMID:18443221)
RGD PMID:18443221 PMID:18936157, PMID:21873635 MGI:3796758, RGD:13792537 NCBI chr10:48,050,079...48,129,377
Ensembl chr10:48,050,803...48,129,377
JBrowse link
G Wdr45 WD repeat domain 45 part_of
is_active_in
IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:15,621,249...15,627,159
Ensembl chr  X:15,621,209...15,627,235
JBrowse link
G Wdr45b WD repeat domain 45B part_of
is_active_in
IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:110,523,843...110,555,769
Ensembl chr10:110,525,749...110,555,761
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 part_of
is_active_in
located_in
IBA
ISO
PMID:21873635
(PMID:17618624)
RGD PMID:17618624, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in
is_active_in
part_of
ISO
IBA
ISS
(PMID:20505359)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20505359, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172
JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 part_of
is_active_in
located_in
IBA
ISO
PMID:21873635
(PMID:21518905)
RGD PMID:21518905, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in ISO (PMID:22885598) RGD PMID:22885598 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20137
    cellular anatomical entity 19833
      phagophore assembly site 34
        phagophore assembly site membrane 17
          ATG2-ATG18 complex 0
          extrinsic component of phagophore assembly site membrane 2
          intrinsic component of phagophore assembly site membrane + 0
Path 2
Term Annotations click to browse term
  cellular_component 20137
    cellular anatomical entity 19833
      intracellular anatomical structure 14405
        cytoplasm 11381
          phagophore assembly site 34
            phagophore assembly site membrane 17
              ATG2-ATG18 complex 0
              extrinsic component of phagophore assembly site membrane 2
              intrinsic component of phagophore assembly site membrane + 0
paths to the root