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ONTOLOGY REPORT - ANNOTATIONS


Term:phagophore assembly site membrane
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Accession:GO:0034045 term browser browse the term
Definition:A cellular membrane associated with the phagophore assembly site.
Synonyms:exact_synonym: PAS membrane
 narrow_synonym: pre-autophagosomal structure membrane
 related_synonym: isolation membrane;   phagophore



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phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arsg arylsulfatase G located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941
JBrowse link
G Atg12 autophagy related 12 is_active_in
located_in
IBA
ISO
PMID:21873635
(MGI:2137756|PMID:11266458), (MGI:2661260|PMID:12665549)
RGD PMID:11266458 PMID:12665549 PMID:21873635 MGI:2137756 MGI:2661260, RGD:13792537 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg14 autophagy related 14 located_in ISO (PMID:19270696) RGD PMID:19270696 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg16l1 autophagy related 16-like 1 located_in IEA
ISO
GO_REF:0000107
(MGI:2661260|PMID:12665549)
Ensembl
RGD
PMID:12665549 GO_REF:0000107 MGI:2661260 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg16l2 autophagy related 16-like 2 located_in ISO
IEA
(MGI:2661260|PMID:12665549)
GO_REF:0000107
RGD
Ensembl
PMID:12665549 GO_REF:0000107 MGI:2661260 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
JBrowse link
G Atg2a autophagy related 2A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg5 autophagy related 5 located_in
is_active_in
IEA
ISO
IBA
GO_REF:0000044
(MGI:2137756|PMID:11266458), (MGI:2661260|PMID:12665549), (MGI:5476569|PMID:23455425)
PMID:21873635
UniProt
RGD
PMID:11266458 PMID:12665549 PMID:23455425 PMID:21873635 GO_REF:0000044 MGI:2137756 MGI:2661260 MGI:5476569, RGD:13792537 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg9a autophagy related 9A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in ISO
IEA
(PMID:20545908)
GO_REF:0000107
RGD
Ensembl
PMID:20545908 GO_REF:0000107 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in ISO (MGI:5586797|PMID:19956673) RGD PMID:19956673 MGI:5586797 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 located_in
is_active_in
ISO
IBA
(MGI:3796758|PMID:18443221)
PMID:21873635
RGD PMID:18443221 PMID:21873635 MGI:3796758, RGD:13792537 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Stbd1 starch binding domain 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in
is_active_in
ISO
IBA
(PMID:18936157)
PMID:21873635
(MGI:3796758|PMID:18443221)
RGD PMID:18443221 PMID:18936157 PMID:21873635 MGI:3796758, RGD:13792537 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 located_in
is_active_in
ISO
IBA
(PMID:18936157)
PMID:21873635
(MGI:3796758|PMID:18443221)
RGD PMID:18443221 PMID:18936157 PMID:21873635 MGI:3796758, RGD:13792537 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Wdr45 WD repeat domain 45 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in
is_active_in
ISO
IBA
(PMID:17618624)
PMID:21873635
RGD PMID:17618624 PMID:21873635 RGD:13792537 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in
is_active_in
ISO
IBA
ISS
(PMID:20505359)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20505359 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in
is_active_in
ISO
IBA
(PMID:21518905)
PMID:21873635
RGD PMID:21518905 PMID:21873635 RGD:13792537 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in ISO (PMID:22885598) RGD PMID:22885598 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20305
    cellular anatomical entity 20020
      phagophore assembly site 35
        phagophore assembly site membrane 19
          ATG2-ATG18 complex 0
          extrinsic component of phagophore assembly site membrane 2
          intrinsic component of phagophore assembly site membrane + 0
Path 2
Term Annotations click to browse term
  cellular_component 20305
    cellular anatomical entity 20020
      intracellular anatomical structure 14605
        cytoplasm 11566
          phagophore assembly site 35
            phagophore assembly site membrane 19
              ATG2-ATG18 complex 0
              extrinsic component of phagophore assembly site membrane 2
              intrinsic component of phagophore assembly site membrane + 0
paths to the root