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ONTOLOGY REPORT - ANNOTATIONS

Term:phagophore assembly site membrane
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Accession:GO:0034045 term browser browse the term
Definition:A cellular membrane associated with the phagophore assembly site.
Synonyms:exact_synonym: PAS membrane
 narrow_synonym: pre-autophagosomal structure membrane
 related_synonym: isolation membrane;   phagophore


show annotations for term's descendants           Sort by:
phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arsg arylsulfatase G located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941 		JBrowse link
G Atg12 autophagy related 12 is_active_in
located_in		 IBA
ISO		 PMID:21873635
(MGI:2137756|PMID:11266458), (MGI:2661260|PMID:12665549)		 RGD PMID:11266458 PMID:12665549 PMID:21873635 MGI:2137756 MGI:2661260, RGD:13792537 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418 		JBrowse link
G Atg14 autophagy related 14 located_in ISO (PMID:19270696) RGD PMID:19270696 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113 		JBrowse link
G Atg16l1 autophagy related 16-like 1 located_in ISO (MGI:2661260|PMID:12665549) RGD PMID:12665549 MGI:2661260 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg16l2 autophagy related 16-like 2 located_in ISO (MGI:2661260|PMID:12665549) RGD PMID:12665549 MGI:2661260 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420 		JBrowse link
G Atg2a autophagy related 2A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242 		JBrowse link
G Atg2b autophagy related 2B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015 		JBrowse link
G Atg5 autophagy related 5 is_active_in
located_in		 IBA
ISO
IEA		 PMID:21873635
(MGI:2137756|PMID:11266458), (MGI:2661260|PMID:12665549), (MGI:5476569|PMID:23455425)
GO_REF:0000044		 RGD
UniProt		 PMID:11266458 PMID:12665549 PMID:23455425 PMID:21873635 GO_REF:0000044 MGI:2137756 MGI:2661260 MGI:5476569, RGD:13792537 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Atg9a autophagy related 9A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atg9b autophagy related 9B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in ISO (PMID:20545908) RGD PMID:20545908 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in ISO (MGI:5586797|PMID:19956673) RGD PMID:19956673 MGI:5586797 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 is_active_in
located_in		 IBA
ISO		 PMID:21873635
(MGI:3796758|PMID:18443221)		 RGD PMID:18443221 PMID:21873635 MGI:3796758, RGD:13792537 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G Stbd1 starch binding domain 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in ISO (MGI:3796758|PMID:18443221)
(PMID:18936157), (PMID:22885598)		 RGD PMID:18443221 PMID:18936157 PMID:22885598 MGI:3796758 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 located_in ISO (MGI:3796758|PMID:18443221)
(PMID:18936157)		 RGD PMID:18443221 PMID:18936157 MGI:3796758 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407 		JBrowse link
G Wdr45 WD repeat domain 45 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wdr45b WD repeat domain 45B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 is_active_in
located_in		 IBA
ISO		 PMID:21873635
(PMID:17618624)		 RGD PMID:17618624 PMID:21873635 RGD:13792537 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in
is_active_in		 ISS
ISO
IBA		 GO_REF:0000024
(PMID:20505359)
PMID:21873635		 UniProt
RGD		 PMID:20505359 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in
is_active_in		 ISO
IBA		 (PMID:21518905)
PMID:21873635		 RGD PMID:21518905 PMID:21873635 RGD:13792537 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in ISO (PMID:22885598) UniProt PMID:22885598 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20072
    cellular anatomical entity 19911
      phagophore assembly site 39
        phagophore assembly site membrane 20
          ATG2-ATG18 complex 0
          extrinsic component of phagophore assembly site membrane 2
Path 2
Term Annotations click to browse term
  cellular_component 20072
    cellular anatomical entity 19911
      intracellular anatomical structure 14406
        cytoplasm 11308
          phagophore assembly site 39
            phagophore assembly site membrane 20
              ATG2-ATG18 complex 0
              extrinsic component of phagophore assembly site membrane 2
paths to the root