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ONTOLOGY REPORT - ANNOTATIONS

Term:phagophore assembly site membrane
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Accession:GO:0034045 term browser browse the term
Definition:A cellular membrane associated with the phagophore assembly site.
Synonyms:exact_synonym: PAS membrane
 narrow_synonym: pre-autophagosomal structure membrane
 related_synonym: isolation membrane;   phagophore


show annotations for term's descendants           Sort by:
phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 is_active_in
located_in		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000044
(PMID:11266458), (PMID:12665549)		 GO_Central
UniProt
RGD		 PMID:11266458 PMID:12665549 GO_REF:0000033 GO_REF:0000044 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:39,452,191...39,462,418 		JBrowse link
G Atg13 autophagy related 13 is_active_in ISO
IEA		 (PMID:19597335)
GO_REF:0000107		 RGD
Ensembl		 PMID:19597335 GO_REF:0000107 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043 		JBrowse link
G Atg14 autophagy related 14 located_in ISO
IEA		 (PMID:19270696)
GO_REF:0000107
GO_REF:0000044		 RGD
Ensembl
UniProt		 PMID:19270696 GO_REF:0000044 GO_REF:0000107 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113 		JBrowse link
G Atg16l1 autophagy related 16-like 1 is_active_in
located_in		 IBA
ISO
IEA		 GO_REF:0000033
(PMID:32960676)
GO_REF:0000107
(PMID:12665549)		 GO_Central
RGD
Ensembl		 PMID:12665549 PMID:32960676 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg16l2 autophagy related 16-like 2 located_in ISO
IEA		 (PMID:12665549)
GO_REF:0000107		 RGD
Ensembl		 PMID:12665549 GO_REF:0000107 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420 		JBrowse link
G Atg2a autophagy related 2A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:203,542,559...203,562,242 		JBrowse link
G Atg2b autophagy related 2B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:124,525,523...124,592,015 		JBrowse link
G Atg5 autophagy related 5 located_in
is_active_in		 IEA
ISO
ISS
IBA		 GO_REF:0000044
(PMID:32960676)
GO_REF:0000024
GO_REF:0000107
(PMID:11266458), (PMID:12665549), (PMID:23455425)
GO_REF:0000033		 UniProt
RGD
Ensembl
GO_Central		 PMID:11266458 PMID:12665549 PMID:23455425 PMID:32960676 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Atg9a autophagy related 9A located_in IEA GO_REF:0000044
GO_REF:0000104		 UniProt GO_REF:0000044 GO_REF:0000104 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atg9b autophagy related 9B located_in IEA GO_REF:0000044
GO_REF:0000104		 UniProt GO_REF:0000044 GO_REF:0000104 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:98,623,582...98,648,766
Ensembl chr14:94,415,275...94,448,248 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in ISO
IEA		 (PMID:20545908)
GO_REF:0000044		 RGD
UniProt		 PMID:20545908 GO_REF:0000044 NCBI chr 1:211,835,133...211,843,408
Ensembl chr 1:202,405,759...202,413,868
Ensembl chr  X:202,405,759...202,413,868 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family located_in IEA
ISO		 GO_REF:0000107
(PMID:32960676)		 Ensembl
RGD		 PMID:32960676 GO_REF:0000107 NCBI chr 2:137,678,953...137,689,581
Ensembl chr 2:135,528,116...135,538,719 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in ISO
IEA		 (PMID:19956673)
GO_REF:0000107		 RGD
Ensembl		 PMID:19956673 GO_REF:0000107 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 is_active_in
located_in		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:18443221)		 GO_Central
Ensembl
RGD		 PMID:18443221 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G Stbd1 starch binding domain 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:15,754,769...15,758,174
Ensembl chr14:15,469,582...15,477,443 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in
is_active_in		 ISO
IEA
IBA		 (PMID:18936157), (PMID:22885598)
GO_REF:0000107
GO_REF:0000104
(PMID:18443221)
GO_REF:0000033		 RGD
Ensembl
UniProt
GO_Central		 PMID:18443221 PMID:18936157 PMID:22885598 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 located_in
is_active_in		 ISO
IEA
IBA		 (PMID:18936157)
GO_REF:0000107
(PMID:18443221)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:18443221 PMID:18936157 GO_REF:0000033 GO_REF:0000107 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,454,030...46,530,407 		JBrowse link
G Ulk3 unc-51 like kinase 3 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:57,992,723...57,999,467 		JBrowse link
G Wdr45 WD repeat domain 45 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wdr45b WD repeat domain 45B is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:106,599,364...106,629,441 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in
is_active_in		 ISO
IEA
IBA		 (PMID:17618624)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:17618624 GO_REF:0000033 GO_REF:0000107 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in
is_active_in		 ISO
IEA
IBA
ISS		 (PMID:20505359)
GO_REF:0000107
GO_REF:0000044
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
UniProt
GO_Central		 PMID:20505359 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in
is_active_in		 ISO
IBA
IEA		 (PMID:21518905)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:21518905 GO_REF:0000033 GO_REF:0000107 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      phagophore assembly site 41
        phagophore assembly site membrane 23
          ATG2-ATG18 complex 0
          extrinsic component of phagophore assembly site membrane 1
Path 2
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      intracellular anatomical structure 15590
        cytoplasm 12298
          phagophore assembly site 41
            phagophore assembly site membrane 23
              ATG2-ATG18 complex 0
              extrinsic component of phagophore assembly site membrane 1
paths to the root