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ONTOLOGY REPORT - ANNOTATIONS


Term:phagophore assembly site membrane
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Accession:GO:0034045 term browser browse the term
Definition:A cellular membrane associated with the phagophore assembly site.
Synonyms:exact_synonym: PAS membrane
 narrow_synonym: pre-autophagosomal structure membrane
 related_synonym: isolation membrane;   phagophore



show annotations for term's descendants           Sort by:
phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 located_in
is_active_in
ISO
IBA
IEA
(MGI:2137756|PMID:11266458), (MGI:2661260|PMID:12665549)
GO_REF:0000033
GO_REF:0000118
RGD
GO_Central
TreeGrafter
PMID:11266458 PMID:12665549 GO_REF:0000033 GO_REF:0000118 MGI:2137756 MGI:2661260 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg13 autophagy related 13 is_active_in ISO (PMID:19597335) RGD PMID:19597335 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg14 autophagy related 14 located_in ISO (PMID:19270696) RGD PMID:19270696 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg16l1 autophagy related 16-like 1 located_in
is_active_in
ISO
IBA
(MGI:2661260|PMID:12665549)
GO_REF:0000033
RGD
GO_Central
PMID:12665549 GO_REF:0000033 MGI:2661260 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg16l2 autophagy related 16-like 2 located_in
is_active_in
ISO
IBA
(MGI:2661260|PMID:12665549)
GO_REF:0000033
RGD
GO_Central
PMID:12665549 GO_REF:0000033 MGI:2661260 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
JBrowse link
G Atg2a autophagy related 2A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg5 autophagy related 5 located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000044
GO_REF:0000033
GO_REF:0000118
(MGI:2137756|PMID:11266458), (MGI:2661260|PMID:12665549), (MGI:5476569|PMID:23455425)
UniProt
GO_Central
TreeGrafter
RGD
PMID:11266458 PMID:12665549 PMID:23455425 GO_REF:0000033 GO_REF:0000044 GO_REF:0000118 MGI:2137756 MGI:2661260 MGI:5476569 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg9a autophagy related 9A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in ISO (PMID:20545908) RGD PMID:20545908 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
Ensembl chr  X:202,405,759...202,413,868
JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in ISO (MGI:5586797|PMID:19956673) RGD PMID:19956673 MGI:5586797 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 located_in
is_active_in
ISO
IBA
(MGI:3796758|PMID:18443221)
GO_REF:0000033
RGD
GO_Central
PMID:18443221 GO_REF:0000033 MGI:3796758 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Stbd1 starch binding domain 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in
is_active_in
ISO
IBA
(MGI:3796758|PMID:18443221)
GO_REF:0000033
(PMID:18936157), (PMID:22885598)
RGD
GO_Central
PMID:18443221 PMID:18936157 PMID:22885598 GO_REF:0000033 MGI:3796758 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 located_in
is_active_in
ISO
IBA
(PMID:18936157)
GO_REF:0000033
(MGI:3796758|PMID:18443221)
RGD
GO_Central
PMID:18443221 PMID:18936157 GO_REF:0000033 MGI:3796758 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Ulk3 unc-51 like kinase 3 located_in
is_active_in
IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:57,992,723...57,999,467
JBrowse link
G Wdr45 WD repeat domain 45 located_in
is_active_in
IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr  X:14,776,280...14,782,202
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in
is_active_in
ISO
IBA
(PMID:17618624)
GO_REF:0000033
RGD
GO_Central
PMID:17618624 GO_REF:0000033 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in
is_active_in
ISO
IBA
ISS
(PMID:20505359)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:20505359 GO_REF:0000024 GO_REF:0000033 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in
is_active_in
ISO
IBA
(PMID:21518905)
GO_REF:0000033
RGD
GO_Central
PMID:21518905 GO_REF:0000033 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21257
    cellular anatomical entity 21101
      phagophore assembly site 39
        phagophore assembly site membrane 21
          ATG2-ATG18 complex 0
          extrinsic component of phagophore assembly site membrane 1
Path 2
Term Annotations click to browse term
  cellular_component 21257
    cellular anatomical entity 21101
      intracellular anatomical structure 15558
        cytoplasm 12274
          phagophore assembly site 39
            phagophore assembly site membrane 21
              ATG2-ATG18 complex 0
              extrinsic component of phagophore assembly site membrane 1
paths to the root