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ONTOLOGY REPORT - ANNOTATIONS


Term:phagophore assembly site
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Accession:GO:0000407 term browser browse the term
Definition:Punctate structures proximal to the endoplasmic reticulum which are the sites where the Atg machinery assembles upon autophagy induction.
Synonyms:exact_synonym: PAS
 narrow_synonym: perivacuolar space;   pre-autophagosomal structure


show annotations for term's descendants           Sort by:
 
phagophore assembly site term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg101 autophagy related 101 ISO
IBA
(PMID:19597335)
PMID:21873635
RGD PMID:19597335, PMID:21873635 RGD:13792537 NCBI chr 7:142,929,381...142,938,559
Ensembl chr 7:142,929,400...142,938,554
JBrowse link
G Atg13 autophagy related 13 IBA
ISO
PMID:21873635
(MGI:3849242|PMID:19258318), (MGI:4365321|PMID:19211835)
RGD PMID:19211835, PMID:19258318, PMID:21873635 MGI:3849242, MGI:4365321, RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410
JBrowse link
G Atg2a autophagy related 2A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,612,584...221,632,291
Ensembl chr 1:221,612,584...221,632,267
JBrowse link
G Atg2b autophagy related 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:129,449,451...129,519,599
Ensembl chr 6:129,449,449...129,509,720
JBrowse link
G Atg7 autophagy related 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124
JBrowse link
G Atg9a autophagy related 9A ISO
IBA
(PMID:22456507)
PMID:21873635
RGD PMID:22456507, PMID:21873635 RGD:13792537 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382
JBrowse link
G Atg9b autophagy related 9B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:7,314,369...7,322,095
Ensembl chr 4:7,314,369...7,321,029
JBrowse link
G Becn1 beclin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297
JBrowse link
G Becn2 beclin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:93,971,720...93,974,467
Ensembl chr13:93,972,426...93,974,410
JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:7,331,321...7,397,588
Ensembl chr20:7,331,326...7,397,448
JBrowse link
G Nbr1 NBR1, autophagy cargo receptor IEA
ISO
IBA
GO_REF:0000107
(MGI:4880808|PMID:21220506)
GO_REF:0000002
PMID:21873635
Ensembl
RGD
InterPro
PMID:21220506, PMID:21873635 GO_REF:0000002, GO_REF:0000107, MGI:4880808, RGD:13792537 NCBI chr10:89,455,202...89,483,791
Ensembl chr10:89,459,650...89,484,080
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 ISO (PMID:28561066)
(MGI:3849242|PMID:19258318)
RGD PMID:19258318, PMID:28561066 MGI:3849242 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341
JBrowse link
G Sqstm1 sequestosome 1 ISO (MGI:4880808|PMID:21220506) RGD PMID:21220506 MGI:4880808 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294
JBrowse link
G Stx12 syntaxin 12 ISO
IEA
(PMID:24095276)
GO_REF:0000107
RGD
Ensembl
PMID:24095276 GO_REF:0000107 NCBI chr 5:151,044,050...151,072,893
Ensembl chr 5:151,044,329...151,072,904
JBrowse link
G Trappc8 trafficking protein particle complex 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:15,298,673...15,375,034
Ensembl chr18:15,298,978...15,375,031
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (MGI:3849242|PMID:19258318), (MGI:4880808|PMID:21220506) RGD PMID:19258318, PMID:21220506 MGI:3849242, MGI:4880808 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link
G Vmp1 vacuole membrane protein 1 ISO (MGI:4880808|PMID:21220506) RGD PMID:21220506 MGI:4880808 NCBI chr10:73,901,988...74,001,900
Ensembl chr10:73,902,837...74,001,895
JBrowse link
G Wdr45 WD repeat domain 45 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000044
(PMID:28561066)
UniProt
RGD
PMID:28561066 GO_REF:0000024, GO_REF:0000044 NCBI chr  X:15,621,249...15,627,159
Ensembl chr  X:15,621,209...15,627,235
JBrowse link
G Wdr45b WD repeat domain 45B ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:110,523,843...110,555,769
Ensembl chr10:110,525,749...110,555,761
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 ISO (PMID:15602573), (PMID:28561066)
(MGI:5565574|PMID:24098492)
RGD PMID:15602573, PMID:24098492, PMID:28561066 MGI:5565574 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 ISO (PMID:22456507), (PMID:28561066)
(MGI:5605433|PMID:24954904)
RGD PMID:22456507, PMID:24954904, PMID:28561066 MGI:5605433 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172
JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:107,031,411...107,080,590
Ensembl chr 6:107,031,412...107,080,524
JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 ISO
IBA
(PMID:21518905)
PMID:21873635
RGD PMID:21518905, PMID:21873635 RGD:13792537 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (PMID:22885598) RGD PMID:22885598 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link
phagophore assembly site membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 IBA
ISO
PMID:21873635
(MGI:2137756|PMID:11266458)
RGD PMID:11266458, PMID:21873635 MGI:2137756, RGD:13792537 NCBI chr18:40,721,799...40,732,143
Ensembl chr18:40,721,800...40,732,126
JBrowse link
G Atg14 autophagy related 14 ISO
IBA
(PMID:19270696)
PMID:21873635
RGD PMID:19270696, PMID:21873635 RGD:13792537 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753
JBrowse link
G Atg2a autophagy related 2A IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:221,612,584...221,632,291
Ensembl chr 1:221,612,584...221,632,267
JBrowse link
G Atg2b autophagy related 2B IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:129,449,451...129,519,599
Ensembl chr 6:129,449,449...129,509,720
JBrowse link
G Atg5 autophagy related 5 IBA
ISO
IEA
PMID:21873635
(MGI:2137756|PMID:11266458), (MGI:5476569|PMID:23455425)
GO_REF:0000044
RGD
UniProt
PMID:11266458, PMID:23455425, PMID:21873635 GO_REF:0000044, MGI:2137756, MGI:5476569, RGD:13792537 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140
JBrowse link
G LOC100363782 RAB1B, member RAS oncogene family-like IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 1:220,480,834...220,491,469 JBrowse link
G LOC102555167 ras-related protein Rab-1B-like IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:220,480,828...220,491,456
Ensembl chr 1:220,480,834...220,491,469
JBrowse link
G Rab1b RAB1B, member RAS oncogene family IEA
ISO
GO_REF:0000107
(PMID:20545908)
Ensembl
RGD
PMID:20545908 GO_REF:0000107 NCBI chr 1:220,483,529...220,491,469
Ensembl chr 1:220,480,834...220,491,469
JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO (MGI:5586797|PMID:19956673) RGD PMID:19956673 MGI:5586797 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 IBA
ISO
PMID:21873635
(MGI:3796758|PMID:18443221)
RGD PMID:18443221, PMID:21873635 MGI:3796758, RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341
JBrowse link
G Stbd1 starch binding domain 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:16,976,355...16,979,760
Ensembl chr14:16,976,356...16,979,760
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (PMID:18936157)
(MGI:3796758|PMID:18443221)
RGD PMID:18443221, PMID:18936157 MGI:3796758 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 ISO (PMID:18936157)
(MGI:3796758|PMID:18443221)
RGD PMID:18443221, PMID:18936157 MGI:3796758 NCBI chr10:48,050,079...48,129,377
Ensembl chr10:48,050,803...48,129,377
JBrowse link
G Wdr45 WD repeat domain 45 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:15,621,249...15,627,159
Ensembl chr  X:15,621,209...15,627,235
JBrowse link
G Wdr45b WD repeat domain 45B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:110,523,843...110,555,769
Ensembl chr10:110,525,749...110,555,761
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 ISO
IBA
(PMID:17618624)
PMID:21873635
RGD PMID:17618624, PMID:21873635 RGD:13792537 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 ISO
IBA
ISS
(PMID:20505359)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20505359, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      phagophore assembly site 32
        phagophore assembly site membrane + 17
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      intracellular anatomical structure 14638
        cytoplasm 11463
          phagophore assembly site 32
            phagophore assembly site membrane + 17
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.