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ONTOLOGY REPORT - ANNOTATIONS


Term:phagophore assembly site
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Accession:GO:0000407 term browser browse the term
Definition:Punctate structures proximal to the endoplasmic reticulum which are the sites where the Atg machinery assembles upon autophagy induction.
Synonyms:exact_synonym: PAS
 narrow_synonym: perivacuolar space;   pre-autophagosomal structure



show annotations for term's descendants           Sort by:
 
phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg101 autophagy related 101 located_in
part_of
is_active_in
ISO
IBA
(PMID:19597335)
(PMID:18936157)
PMID:21873635
RGD PMID:18936157 PMID:19597335 PMID:21873635 RGD:13792537 NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:132,398,483...132,407,633
JBrowse link
G Atg13 autophagy related 13 located_in
part_of
is_active_in
ISO
IBA
(MGI:3849242|PMID:19258318), (MGI:4365321|PMID:19211835)
(PMID:18936157)
(PMID:19597335)
PMID:21873635
RGD PMID:18936157 PMID:19211835 PMID:19258318 PMID:19597335 PMID:21873635 MGI:3849242 MGI:4365321, RGD:13792537 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg2a autophagy related 2A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg7 autophagy related 7 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Atg9a autophagy related 9A is_active_in
located_in
IBA
ISO
PMID:21873635
(PMID:22456507)
RGD PMID:22456507 PMID:21873635 RGD:13792537 NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Bcas3 BCAS3, microtubule associated cell migration factor located_in ISO (PMID:33499712) RGD PMID:33499712 NCBI chr10:70,213,710...70,673,080
Ensembl chr10:70,214,098...70,673,080
JBrowse link
G Becn1 beclin 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Becn2 beclin 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:87,843,528...87,892,343
Ensembl chr13:87,844,531...87,845,787
JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:5,809,931...5,876,231
Ensembl chr20:5,809,936...5,876,012
JBrowse link
G Nbr1 NBR1, autophagy cargo receptor located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
(MGI:4880808|PMID:21220506)
GO_REF:0000107
InterPro
RGD
Ensembl
PMID:21220506 PMID:21873635 GO_REF:0000002 GO_REF:0000107 MGI:4880808, RGD:13792537 NCBI chr10:86,477,775...86,506,418
Ensembl chr10:86,478,290...86,506,412
JBrowse link
G Phaf1 phagosome assembly factor 1 located_in ISS
ISO
IEA
GO_REF:0000024
(PMID:33499712)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:33499712 GO_REF:0000024 GO_REF:0000107 NCBI chr19:33,101,453...33,138,920
Ensembl chr19:33,101,490...33,138,914
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 located_in
part_of
ISO (MGI:3849242|PMID:19258318)
(PMID:18936157)
(PMID:19597335), (PMID:28561066)
RGD PMID:18936157 PMID:19258318 PMID:19597335 PMID:28561066 MGI:3849242 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Sqstm1 sequestosome 1 located_in ISO (MGI:4880808|PMID:21220506) RGD PMID:21220506 MGI:4880808 NCBI chr10:34,525,517...34,536,685
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Stx12 syntaxin 12 located_in ISO
IEA
(PMID:24095276)
GO_REF:0000107
RGD
Ensembl
PMID:24095276 GO_REF:0000107 NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:145,063,587...145,092,377
JBrowse link
G Trappc8 trafficking protein particle complex subunit 8 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:12,103,874...12,180,422
Ensembl chr18:12,103,877...12,180,107
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in
part_of
ISO (MGI:3849242|PMID:19258318), (MGI:4880808|PMID:21220506)
(PMID:18936157)
(PMID:19597335)
RGD PMID:18936157 PMID:19258318 PMID:19597335 PMID:21220506 MGI:3849242 MGI:4880808 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Vmp1 vacuole membrane protein 1 located_in ISO (MGI:4880808|PMID:21220506) RGD PMID:21220506 MGI:4880808 NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007
JBrowse link
G Wdr45 WD repeat domain 45 located_in ISO
IEA
ISS
(PMID:28561066)
GO_REF:0000044
GO_REF:0000024
RGD
UniProt
PMID:28561066 GO_REF:0000024 GO_REF:0000044 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B located_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in ISO (MGI:5565574|PMID:24098492)
(PMID:15602573), (PMID:28561066), (PMID:33499712)
RGD PMID:15602573 PMID:24098492 PMID:28561066 PMID:33499712 MGI:5565574 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in ISO (MGI:5605433|PMID:24954904)
(PMID:22456507), (PMID:28561066), (PMID:33499712)
RGD PMID:22456507 PMID:24954904 PMID:28561066 PMID:33499712 MGI:5605433 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 located_in ISO (PMID:23455425), (PMID:33499712) RGD PMID:23455425 PMID:33499712 NCBI chr 6:103,184,938...103,234,111
Ensembl chr 6:103,184,938...103,234,039
JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in
is_active_in
ISO
IBA
(PMID:21518905)
PMID:21873635
RGD PMID:21518905 PMID:21873635 RGD:13792537 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in ISO (PMID:22885598) RGD PMID:22885598 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arsg arylsulfatase G located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941
JBrowse link
G Atg12 autophagy related 12 is_active_in
located_in
IBA
ISO
PMID:21873635
(MGI:2137756|PMID:11266458), (MGI:2661260|PMID:12665549)
RGD PMID:11266458 PMID:12665549 PMID:21873635 MGI:2137756 MGI:2661260, RGD:13792537 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg14 autophagy related 14 located_in ISO (PMID:19270696) RGD PMID:19270696 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg16l1 autophagy related 16-like 1 located_in IEA
ISO
GO_REF:0000107
(MGI:2661260|PMID:12665549)
Ensembl
RGD
PMID:12665549 GO_REF:0000107 MGI:2661260 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg16l2 autophagy related 16-like 2 located_in ISO
IEA
(MGI:2661260|PMID:12665549)
GO_REF:0000107
RGD
Ensembl
PMID:12665549 GO_REF:0000107 MGI:2661260 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
JBrowse link
G Atg2a autophagy related 2A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg5 autophagy related 5 located_in
is_active_in
IEA
ISO
IBA
GO_REF:0000044
(MGI:2137756|PMID:11266458), (MGI:2661260|PMID:12665549), (MGI:5476569|PMID:23455425)
PMID:21873635
UniProt
RGD
PMID:11266458 PMID:12665549 PMID:23455425 PMID:21873635 GO_REF:0000044 MGI:2137756 MGI:2661260 MGI:5476569, RGD:13792537 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg9a autophagy related 9A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in ISO
IEA
(PMID:20545908)
GO_REF:0000107
RGD
Ensembl
PMID:20545908 GO_REF:0000107 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in ISO (MGI:5586797|PMID:19956673) RGD PMID:19956673 MGI:5586797 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 located_in
is_active_in
ISO
IBA
(MGI:3796758|PMID:18443221)
PMID:21873635
RGD PMID:18443221 PMID:21873635 MGI:3796758, RGD:13792537 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Stbd1 starch binding domain 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in
is_active_in
ISO
IBA
(PMID:18936157)
PMID:21873635
(MGI:3796758|PMID:18443221)
RGD PMID:18443221 PMID:18936157 PMID:21873635 MGI:3796758, RGD:13792537 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 located_in
is_active_in
ISO
IBA
(PMID:18936157)
PMID:21873635
(MGI:3796758|PMID:18443221)
RGD PMID:18443221 PMID:18936157 PMID:21873635 MGI:3796758, RGD:13792537 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Wdr45 WD repeat domain 45 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in
is_active_in
ISO
IBA
(PMID:17618624)
PMID:21873635
RGD PMID:17618624 PMID:21873635 RGD:13792537 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in
is_active_in
ISO
IBA
ISS
(PMID:20505359)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20505359 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      phagophore assembly site 35
        phagophore assembly site membrane + 19
Path 2
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      intracellular anatomical structure 14364
        cytoplasm 11373
          phagophore assembly site 35
            phagophore assembly site membrane + 19
paths to the root