Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:chromatoid body
go back to main search page
Accession:GO:0033391 term browser browse the term
Definition:A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182).


show annotations for term's descendants           Sort by:
chromatoid body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic subunit 2 located_in ISO MMO:0000663 RGD
MGI		 PMID:27029769 GO_REF:0000096 MGI:4417868 RGD:11529670 NCBI chr15:72,967,693...73,056,777
Ensembl chr15:72,967,693...73,056,784 		JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 located_in IDA (MGI:5447260|PMID:22900038) UniProt PMID:22900038 MGI:5447260 NCBI chr 7:112,777,820...112,913,333
Ensembl chr 7:112,806,672...112,913,333 		JBrowse link
G Clock clock circadian regulator located_in IDA (MGI:5447260|PMID:22900038) UniProt PMID:22900038 MGI:5447260 NCBI chr 5:76,357,715...76,452,675
Ensembl chr 5:76,357,715...76,452,639 		JBrowse link
G Ddx25 DEAD box helicase 25 located_in IDA (MGI:3040720|PMID:15096601), (MGI:6453518|PMID:32665638) UniProt PMID:15096601 PMID:32665638 MGI:3040720 MGI:6453518 NCBI chr 9:35,453,144...35,469,766
Ensembl chr 9:35,447,943...35,469,824 		JBrowse link
G Ddx4 DEAD box helicase 4 located_in ISO
IDA		 (PMID:10781947)
(PMID:10781947), (PMID:22792342)		 MGI
RGD		 PMID:10781947 PMID:22792342 PMID:24141902 GO_REF:0000096 MGI:4417868 RGD:10755411 NCBI chr13:112,734,867...112,790,342
Ensembl chr13:112,734,867...112,789,009 		JBrowse link
G Ddx6 DEAD-box helicase 6 located_in ISO MGI
RGD		 PMID:24141902 GO_REF:0000096 MGI:4417868 RGD:10755411 NCBI chr 9:44,514,113...44,552,028
Ensembl chr 9:44,516,189...44,552,028 		JBrowse link
G Eif4e eukaryotic translation initiation factor 4E located_in IDA (PMID:22792342) MGI PMID:22792342 NCBI chr 3:138,231,952...138,265,457
Ensembl chr 3:138,231,940...138,265,457 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer located_in IDA (PMID:16787967) MGI PMID:16787967 NCBI chr 1:166,028,954...166,066,313
Ensembl chr 1:166,028,770...166,066,316 		JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate located_in ISO RGD
MGI		 PMID:21764106 GO_REF:0000096 MGI:4417868 RGD:9685331 NCBI chr10:37,009,239...37,014,922
Ensembl chr10:37,009,371...37,014,916 		JBrowse link
G Nsun2 NOL1/NOP2/Sun domain family member 2 located_in IDA (MGI:5525987|PMID:23401851) CACAO PMID:23401851 MGI:5525987 NCBI chr13:69,760,135...69,783,899
Ensembl chr13:69,681,865...69,783,899 		JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 located_in IDA (MGI:3640041|PMID:16787948), (MGI:3663970|PMID:16938833), (PMID:21539824) UniProt PMID:16787948 PMID:16938833 PMID:21539824 MGI:3640041 MGI:3663970 NCBI chr 5:128,813,135...128,832,538
Ensembl chr 5:128,779,588...128,832,538 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 located_in IDA (MGI:3842880|PMID:19114715), (PMID:21539824) MGI PMID:19114715 PMID:21539824 MGI:3842880 NCBI chr14:70,609,926...70,674,338
Ensembl chr14:70,609,926...70,666,832 		JBrowse link
G Slc25a54 solute carrier family 25, member 54 located_in IDA (PMID:22792342) MGI PMID:22792342 NCBI chr 3:108,987,815...109,023,898
Ensembl chr 3:108,987,785...109,024,003 		JBrowse link
G Smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase located_in IDA (MGI:6453518|PMID:32665638) UniProt PMID:32665638 MGI:6453518 NCBI chr 7:117,730,531...117,843,026
Ensembl chr 7:117,730,531...117,842,893 		JBrowse link
G Tdrd1 tudor domain containing 1 located_in IDA (PMID:17141210) MGI PMID:17141210 NCBI chr19:56,814,603...56,858,444
Ensembl chr19:56,814,641...56,858,444 		JBrowse link
G Tdrd5 tudor domain containing 5 located_in IDA (MGI:4946318|PMID:21383078) UniProt PMID:21383078 MGI:4946318 NCBI chr 1:156,082,866...156,131,874
Ensembl chr 1:156,082,866...156,131,234 		JBrowse link
G Tdrd6 tudor domain containing 6 located_in IDA (MGI:3847167|PMID:19345099) UniProt PMID:19345099 MGI:3847167 NCBI chr17:43,926,225...43,942,737
Ensembl chr17:43,926,226...43,941,190 		JBrowse link
G Tdrd7 tudor domain containing 7 located_in IDA (MGI:3695528|PMID:17141210) UniProt PMID:17141210 MGI:3695528 NCBI chr 4:45,965,335...46,034,766
Ensembl chr 4:45,965,334...46,034,761 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28585
    cellular anatomical entity 19618
      cytoplasm 11937
        cytoplasmic ribonucleoprotein granule 250
          chromatoid body 18
Path 2
Term Annotations click to browse term
  cellular_component 28585
    cellular anatomical entity 19618
      organelle 13554
        non-membrane-bounded organelle 4911
          intracellular non-membrane-bounded organelle 4909
            ribonucleoprotein granule 268
              cytoplasmic ribonucleoprotein granule 250
                chromatoid body 18
paths to the root