Tdrd5 (tudor domain containing 5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tdrd5 (tudor domain containing 5) Mus musculus
Analyze
Symbol: Tdrd5
Name: tudor domain containing 5
RGD ID: 1623822
MGI Page MGI
Description: Involved in DNA methylation involved in gamete generation; P granule organization; and spermatid development. Localizes to chromatoid body and pi-body. Is expressed in genitourinary system. Orthologous to human TDRD5 (tudor domain containing 5); INTERACTS WITH 1,2-dimethylhydrazine; 4,4'-sulfonyldiphenol; bis(2-ethylhexyl) phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Gm103; tudor domain containing protein 5; tudor domain-containing protein 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391156,082,866 - 156,131,874 (-)NCBIGRCm39mm39
GRCm39 Ensembl1156,082,866 - 156,131,234 (-)Ensembl
GRCm381156,255,296 - 156,304,304 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1156,255,296 - 156,303,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv371158,185,426 - 158,233,479 (-)NCBIGRCm37mm9NCBIm37
MGSCv361158,091,972 - 158,140,386 (-)NCBImm8
Celera1158,643,481 - 158,698,126 (-)NCBICelera
Cytogenetic Map1G3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatoid body  (IDA)
cytoplasm  (IEA)
pi-body  (IDA)

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15465492   PMID:16141072   PMID:16141073   PMID:17015433   PMID:18287559   PMID:19000842  
PMID:21383078   PMID:21386911   PMID:21931791   PMID:21991325   PMID:29317670   PMID:29733347   PMID:31932482  


Genomics

Comparative Map Data
Tdrd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391156,082,866 - 156,131,874 (-)NCBIGRCm39mm39
GRCm39 Ensembl1156,082,866 - 156,131,234 (-)Ensembl
GRCm381156,255,296 - 156,304,304 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1156,255,296 - 156,303,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv371158,185,426 - 158,233,479 (-)NCBIGRCm37mm9NCBIm37
MGSCv361158,091,972 - 158,140,386 (-)NCBImm8
Celera1158,643,481 - 158,698,126 (-)NCBICelera
Cytogenetic Map1G3NCBI
TDRD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1179,591,613 - 179,691,272 (+)EnsemblGRCh38hg38GRCh38
GRCh381179,591,613 - 179,691,272 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371179,560,748 - 179,660,407 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361177,827,648 - 177,927,021 (+)NCBINCBI36hg18NCBI36
Build 341176,292,681 - 176,392,055NCBI
Celera1152,668,657 - 152,768,022 (+)NCBI
Cytogenetic Map1q25.2NCBI
HuRef1150,787,367 - 150,892,229 (+)NCBIHuRef
CHM1_11180,984,584 - 181,084,212 (+)NCBICHM1_1
Tdrd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21368,394,180 - 68,447,745 (-)NCBI
Rnor_6.0 Ensembl1373,872,621 - 73,921,969 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01373,872,637 - 73,922,640 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01378,797,043 - 78,846,216 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41371,241,498 - 71,288,876 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11371,248,263 - 71,303,062 (-)NCBI
Celera1368,255,530 - 68,302,259 (-)NCBICelera
Cytogenetic Map13q22NCBI
Tdrd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540618,895,011 - 18,962,333 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540618,895,010 - 18,961,200 (+)NCBIChiLan1.0ChiLan1.0
TDRD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11158,761,004 - 158,852,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,761,013 - 158,852,660 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01155,080,083 - 155,171,734 (+)NCBIMhudiblu_PPA_v0panPan3
TDRD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1720,259,940 - 20,348,014 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl720,261,630 - 20,348,650 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha719,785,974 - 19,872,623 (-)NCBI
ROS_Cfam_1.0719,997,378 - 20,084,156 (-)NCBI
UMICH_Zoey_3.1719,906,289 - 19,993,027 (-)NCBI
UNSW_CanFamBas_1.0720,012,629 - 20,099,376 (-)NCBI
UU_Cfam_GSD_1.0720,148,162 - 20,234,920 (-)NCBI
Tdrd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934491,571,577 - 91,640,760 (-)NCBI
SpeTri2.0NW_0049364819,418,512 - 9,485,388 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDRD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9121,211,324 - 121,332,219 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19121,245,080 - 121,337,339 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29133,061,343 - 133,143,161 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TDRD5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12549,676,952 - 49,771,381 (-)NCBI
ChlSab1.1 Ensembl2549,677,283 - 49,769,442 (-)Ensembl
Tdrd5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247712,711,791 - 2,818,031 (-)NCBI

Position Markers
Tdrd5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371158,214,395 - 158,215,552UniSTSGRCm37
Celera1158,677,412 - 158,678,583UniSTS
Cytogenetic Map1G3UniSTS
cM Map1 UniSTS
AV209277  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381156,304,140 - 156,304,254UniSTSGRCm38
MGSCv371158,234,271 - 158,234,385UniSTSGRCm37
Celera1158,698,923 - 158,699,037UniSTS
Cytogenetic Map1G3UniSTS
Whitehead/MRC_RH12024.65UniSTS
BB203080  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381156,290,223 - 156,290,343UniSTSGRCm38
MGSCv371158,220,353 - 158,220,473UniSTSGRCm37
Celera1158,687,698 - 158,687,818UniSTS
Celera1158,682,947 - 158,683,067UniSTS
Cytogenetic Map1G3UniSTS
Whitehead/MRC_RH12024.54UniSTS
Tdrd5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1G3UniSTS
Tdrd5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381156,284,265 - 156,285,422UniSTSGRCm38
MGSCv371158,214,395 - 158,215,552UniSTSGRCm37
Celera1158,677,412 - 158,678,583UniSTS
Cytogenetic Map1G3UniSTS
cM Map1 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139774467173774646Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135919071169919261Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141405603175405702Mouse
1301488Tir3b_mtrypansomiasis infection response 3b (mouse)Not determined1128551097157361794Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145317638179317756Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1147032461167758653Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155893961189895041Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141405603175405702Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139774467173774646Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143457095177457233Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129255120163255255Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152211172186211344Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139774467173774646Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112081092175641372Mouse
4141075Bmd1a_mbone mineral density 1a (mouse)Not determined1155962068162317756Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9148047933182048047Mouse
1300837Vmbic1_mventral midbrain iron content 1 (mouse)Not determined1139624618173624738Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136334204170334348Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139774467173774646Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155888654189888802Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139774467173774646Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150317922188627115Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141405603175405702Mouse
1300611Tlln_mtail length (mouse)Not determined1155962068159562802Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131228571165311895Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1156004198190004325Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144703778178704023Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139774467173774646Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139774467173774646Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150317922188627115Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152211172186211344Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147249520183092234Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1136002150170002264Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152211172186211344Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155699229189699330Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150929168184929353Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1156004198190004325Mouse
1301135Pas8_mpulmonary adenoma susceptibility 8 (mouse)Not determined1147249520158405702Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112081092168358833Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142661973176662164Mouse
1301164Tir3c_mtrypansomiasis infection response 3c (mouse)Not determined1154804480188804689Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147249520169211344Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147249520189251027Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139624618173624738Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined156004198190004325Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152211172186211344Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151358674185358833Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155888654189888802Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150317922188627115Mouse
4142119Bpq21_mblood pressure QTL 21 (mouse)Not determined1152211172186211344Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153681660175641372Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined152007542186007711Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155706491186261999Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152211172186211344Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1148047933182048047Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154582944188582944Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153848421187848536Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153885284187885284Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152919071186706423Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155698056189699966Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1104005680191493284Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141267440175267586Mouse
12903996Cfq5_mconditioned fear QTL 5 (mouse)1150730586159479894Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128800000181500000Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117600000180000000Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152305175186305175Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1123000000157000000Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195600000162200000Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139774467173774646Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147391821181391821Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122100000165000000Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155888654189888802Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147391821181391821Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145250061179250061Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141405603175405702Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155175373189175373Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
14700780Syncq3_msynovial calcification QTL 3 (mouse)1155549000156758000Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144621573178621573Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155175373189175373Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194200000172200000Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147249520171804689Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155175373189175373Mouse
14746980Manh50_mmandible shape 50 (mouse)1134255813168255813Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152305175186305175Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121800000165000000Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1156004198190004325Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:292
Count of miRNA genes:191
Interacting mature miRNAs:204
Transcripts:ENSMUST00000121146, ENSMUST00000141760, ENSMUST00000148277, ENSMUST00000167528
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001277730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY522557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV655037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV659775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ976560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000121146   ⟹   ENSMUSP00000137298
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1156,255,296 - 156,303,664 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141760   ⟹   ENSMUSP00000137156
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1156,294,468 - 156,303,606 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148277
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1156,267,026 - 156,274,390 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167528   ⟹   ENSMUSP00000137182
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1156,255,298 - 156,303,348 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193755
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1156,259,791 - 156,263,528 (-)Ensembl
RefSeq Acc Id: NM_001134741   ⟹   NP_001128213
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,082,866 - 156,130,918 (-)NCBI
GRCm381156,255,296 - 156,303,348 (-)NCBI
MGSCv371158,185,426 - 158,233,479 (-)RGD
Celera1158,643,481 - 158,698,384 (-)NCBI
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001277730   ⟹   NP_001264659
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,082,866 - 156,131,176 (-)NCBI
GRCm381156,255,296 - 156,303,606 (-)NCBI
Celera1158,643,481 - 158,698,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496726   ⟹   XP_006496789
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,082,866 - 156,131,874 (-)NCBI
GRCm381156,255,296 - 156,304,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496727   ⟹   XP_006496790
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,082,866 - 156,131,874 (-)NCBI
GRCm381156,255,296 - 156,304,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496728   ⟹   XP_006496791
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,082,866 - 156,131,874 (-)NCBI
GRCm381156,255,296 - 156,304,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496729   ⟹   XP_006496792
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,082,866 - 156,131,874 (-)NCBI
GRCm381156,255,296 - 156,304,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496730   ⟹   XP_006496793
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,083,428 - 156,131,874 (-)NCBI
GRCm381156,255,858 - 156,304,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496731   ⟹   XP_006496794
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,082,866 - 156,131,874 (-)NCBI
GRCm381156,255,296 - 156,304,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496732   ⟹   XP_006496795
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,083,428 - 156,131,874 (-)NCBI
GRCm381156,255,858 - 156,304,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496733   ⟹   XP_006496796
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,082,866 - 156,131,874 (-)NCBI
GRCm381156,255,296 - 156,304,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496734   ⟹   XP_006496797
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,082,866 - 156,130,038 (-)NCBI
GRCm381156,255,296 - 156,302,468 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238780   ⟹   XP_011237082
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,098,976 - 156,131,874 (-)NCBI
GRCm381156,271,406 - 156,304,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252864   ⟹   XP_030108724
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,098,885 - 156,131,874 (-)NCBI
GRCm381156,271,315 - 156,304,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163492   ⟹   XP_036019385
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,100,068 - 156,131,874 (-)NCBI
RefSeq Acc Id: XR_004941506
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,082,866 - 156,131,874 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001128213   ⟸   NM_001134741
- Peptide Label: isoform 1
- UniProtKB: Q5VCS6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001264659   ⟸   NM_001277730
- Peptide Label: isoform 2
- UniProtKB: Q5VCS6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496796   ⟸   XM_006496733
- Peptide Label: isoform X8
- UniProtKB: Q5VCS6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496794   ⟸   XM_006496731
- Peptide Label: isoform X6
- UniProtKB: J3QPB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496791   ⟸   XM_006496728
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006496789   ⟸   XM_006496726
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006496790   ⟸   XM_006496727
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006496792   ⟸   XM_006496729
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006496797   ⟸   XM_006496734
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006496793   ⟸   XM_006496730
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006496795   ⟸   XM_006496732
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011237082   ⟸   XM_011238780
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_030108724   ⟸   XM_030252864
- Peptide Label: isoform X11
RefSeq Acc Id: ENSMUSP00000137298   ⟸   ENSMUST00000121146
RefSeq Acc Id: ENSMUSP00000137182   ⟸   ENSMUST00000167528
RefSeq Acc Id: ENSMUSP00000137156   ⟸   ENSMUST00000141760
RefSeq Acc Id: XP_036019385   ⟸   XM_036163492
- Peptide Label: isoform X11
Protein Domains
HTH OST-type   Tudor

Promoters
RGD ID:6875346
Promoter ID:EPDNEW_M1124
Type:initiation region
Name:Tdrd5_1
Description:Mus musculus tudor domain containing 5 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381156,303,363 - 156,303,423EPDNEW
RGD ID:6818574
Promoter ID:MM_KWN:2526
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000119202,   ENSMUST00000121146,   NM_001134741,   NM_001134741_TDRD5,   OTTMUST00000065360,   UC009UZX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361158,233,236 - 158,233,736 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2684949 AgrOrtholog
Ensembl Genes ENSMUSG00000060985 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000137156 UniProtKB/TrEMBL
  ENSMUSP00000137182 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000137298 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000121146 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000141760 UniProtKB/TrEMBL
  ENSMUST00000167528 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1880 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.50.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro LOTUS-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OST-HTH/LOTUS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNase_OB-fold_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TDRD5_LOTUS_2 UniProtKB/Swiss-Prot
  Tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:214575 UniProtKB/Swiss-Prot
MGD MGI:2684949 ENTREZGENE
NCBI Gene 214575 ENTREZGENE
Pfam OST-HTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tdrd5 PhenoGen
PROSITE HTH_OST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt J3QP93_MOUSE UniProtKB/TrEMBL
  J3QPB7 ENTREZGENE, UniProtKB/TrEMBL
  Q5VCS6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A7YQ76 UniProtKB/Swiss-Prot
  D3YXM4 UniProtKB/Swiss-Prot