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ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasmic ribonucleoprotein granule
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Accession:GO:0036464 term browser browse the term
Definition:A ribonucleoprotein granule located in the cytoplasm.
Synonyms:narrow_synonym: Staufen granule


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cytoplasmic ribonucleoprotein granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta located_in ISO
IEA
(PMID:15121898)
GO_REF:0000107
RGD
Ensembl
PMID:15121898 GO_REF:0000107 NCBI chr12:13,715,843...13,718,813
Ensembl chr12:13,715,843...13,718,841
JBrowse link
G Ago1 argonaute RISC component 1 located_in ISO RGD GO_REF:0000052 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 located_in ISO RGD GO_REF:0000052 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 located_in ISO RGD GO_REF:0000052 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 located_in ISO RGD GO_REF:0000052 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Bard1 BRCA1 associated RING domain 1 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr 9:78,297,723...78,368,777
Ensembl chr 9:78,294,834...78,369,031
JBrowse link
G Blnk B-cell linker located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr 1:260,187,023...260,254,490
Ensembl chr 1:260,186,967...260,254,600
JBrowse link
G Btbd1 BTB domain containing 1 located_in ISO RGD GO_REF:0000052 NCBI chr 1:143,609,729...143,647,124
Ensembl chr 1:143,609,731...143,647,124
JBrowse link
G Cdc42 cell division cycle 42 located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr 5:155,690,267...155,728,385
Ensembl chr 5:155,691,390...155,728,300
JBrowse link
G Cdk9 cyclin-dependent kinase 9 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr 3:11,742,269...11,747,117
Ensembl chr 3:11,742,266...11,747,113
JBrowse link
G Chtop chromatin target of PRMT1 located_in ISO RGD GO_REF:0000052 NCBI chr 2:189,887,850...189,900,079
Ensembl chr 2:189,887,857...189,899,325
JBrowse link
G Ckap4 cytoskeleton-associated protein 4 located_in ISO RGD GO_REF:0000052 NCBI chr 7:24,935,243...24,947,595
Ensembl chr 7:24,939,498...24,947,595
JBrowse link
G Cma1 chymase 1 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr15:34,601,037...34,603,819
Ensembl chr15:34,601,037...34,603,819
JBrowse link
G Ctsh cathepsin H located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr 8:97,439,155...97,458,293
Ensembl chr 8:97,439,161...97,458,287
JBrowse link
G Dcp1a decapping mRNA 1A located_in ISO RGD GO_REF:0000052 NCBI chr16:6,542,415...6,583,856
Ensembl chr16:6,542,216...6,587,619
JBrowse link
G Dcp2 decapping mRNA 2 located_in ISO RGD GO_REF:0000052 NCBI chr18:35,489,274...35,671,676
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Ddx6 DEAD-box helicase 6 located_in ISO RGD GO_REF:0000052 NCBI chr 8:48,924,768...48,961,394
Ensembl chr 8:48,925,604...48,958,026
JBrowse link
G Dhx9 DExH-box helicase 9 located_in ISO (PMID:10198287), (PMID:15121898) RGD PMID:10198287 PMID:15121898 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 located_in ISO
IEA
(PMID:15121898)
GO_REF:0000107
RGD
Ensembl
PMID:15121898 GO_REF:0000107 NCBI chr 4:30,807,755...31,121,097
Ensembl chr 4:30,807,879...31,121,090
JBrowse link
G Edc3 enhancer of mRNA decapping 3 located_in ISO RGD GO_REF:0000052 NCBI chr 8:62,482,126...62,527,665
Ensembl chr 8:62,482,140...62,526,202
JBrowse link
G Edc4 enhancer of mRNA decapping 4 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr19:37,852,659...37,864,651
Ensembl chr19:37,852,659...37,866,355
JBrowse link
G Eid1 EP300 interacting inhibitor of differentiation 1 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr 3:117,938,500...117,940,219
Ensembl chr 3:117,938,500...117,940,219
JBrowse link
G Eif4e eukaryotic translation initiation factor 4E located_in ISO RGD GO_REF:0000052 NCBI chr 2:243,819,616...243,853,987
Ensembl chr 2:243,820,661...243,852,631
JBrowse link
G Flg filaggrin located_in ISO RGD GO_REF:0000052 NCBI chr 2:193,565,401...193,574,297 JBrowse link
G Fmr1 FMRP translational regulator 1 located_in
is_active_in
ISO
IBA
IDA
(PMID:15121898), (PMID:15380484), (PMID:18093976)
PMID:21873635
(MGI:3798322|PMID:18539120)
PMID:16098134
RGD PMID:15121898 PMID:15380484 PMID:18093976 PMID:18539120, PMID:21873635, PMID:16098134 MGI:3798322, RGD:13792537, RGD:1601176 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:120,529,716...120,570,356
Ensembl chr 2:120,512,899...120,570,355
JBrowse link
G Fxr2 FMR1 autosomal homolog 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,237,814...56,257,877
Ensembl chr10:56,237,755...56,257,890
JBrowse link
G Gabpb1 GA binding protein transcription factor subunit beta 1 located_in ISO RGD GO_REF:0000052 NCBI chr 3:119,091,739...119,135,391
Ensembl chr 3:119,091,744...119,135,391
JBrowse link
G Ghr growth hormone receptor located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr 2:53,149,225...53,413,954
Ensembl chr 2:53,150,370...53,413,638
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U located_in
is_active_in
ISO
IBA
IEA
(PMID:15121898)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15121898, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Hoxd10 homeo box D10 located_in IEA
ISO
GO_REF:0000107 Ensembl
RGD
GO_REF:0000052 GO_REF:0000107 NCBI chr 3:61,614,133...61,617,342
Ensembl chr 3:61,613,774...61,617,367
JBrowse link
G Icoslg inducible T-cell co-stimulator ligand located_in ISO RGD GO_REF:0000052 NCBI chr20:11,330,000...11,340,307
Ensembl chr20:11,329,992...11,340,296
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha located_in IEA
ISO
GO_REF:0000107
(PMID:15121898)
Ensembl
RGD
PMID:15121898 GO_REF:0000107 NCBI chr 1:266,782,835...266,794,389
Ensembl chr 1:266,781,617...266,794,431
JBrowse link
G Iqgap1 IQ motif containing GTPase activating protein 1 located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr 1:142,525,041...142,615,673
Ensembl chr 1:142,525,046...142,615,673
JBrowse link
G Khnyn KH and NYN domain containing is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,551,570...34,563,729
Ensembl chr15:34,552,410...34,561,727
JBrowse link
G Lig4 DNA ligase 4 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
JBrowse link
G Lsm14a LSM14A mRNA processing body assembly factor located_in ISO RGD GO_REF:0000052 NCBI chr 1:90,200,866...90,246,292
Ensembl chr 1:90,200,876...90,246,297
JBrowse link
G Mapt microtubule-associated protein tau located_in ISO
IEA
(PMID:15121898)
GO_REF:0000107
RGD
Ensembl
PMID:15121898 GO_REF:0000107 NCBI chr10:92,289,002...92,386,517
Ensembl chr10:92,288,910...92,386,517
JBrowse link
G Mcc MCC regulator of WNT signaling pathway located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr18:35,683,185...35,817,117
NCBI chr 1:12,006,663...12,128,849
Ensembl chr 1:12,006,660...12,128,845
Ensembl chr18:12,006,660...12,128,845
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase located_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
G Myh1 myosin heavy chain 1 located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr10:53,740,841...53,764,610
Ensembl chr10:53,713,938...53,848,347
JBrowse link
G Ncl nucleolin located_in ISO
IEA
GO_REF:0000107
(PMID:15121898)
RGD
Ensembl
PMID:15121898 GO_REF:0000052 GO_REF:0000107 NCBI chr 9:93,369,119...93,377,643
Ensembl chr 9:93,368,932...93,377,643
JBrowse link
G Nfkbiz NFKB inhibitor zeta located_in IEA
ISO
GO_REF:0000107 Ensembl
RGD
GO_REF:0000052 GO_REF:0000107 NCBI chr11:47,243,342...47,271,487
Ensembl chr11:47,243,342...47,271,487
JBrowse link
G Nynrin NYN domain and retroviral integrase containing is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,520,040...34,541,671
Ensembl chr15:34,520,142...34,539,930
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr 7:75,409,581...75,421,874
Ensembl chr 7:75,409,581...75,422,268
JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor located_in ISO RGD GO_REF:0000052 NCBI chr 1:228,337,756...228,369,719
Ensembl chr 1:228,337,767...228,369,761
JBrowse link
G Pcbp1 poly(rC) binding protein 1 located_in ISO RGD GO_REF:0000052 NCBI chr 4:118,327,185...118,329,223
Ensembl chr 4:118,327,533...118,328,602
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr12:12,714,394...12,738,654
Ensembl chr12:12,714,394...12,738,641
JBrowse link
G Poldip3 DNA polymerase delta interacting protein 3 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr 7:123,992,167...124,020,596
Ensembl chr 7:123,992,167...124,020,574
JBrowse link
G Poli DNA polymerase iota located_in IEA
ISO
GO_REF:0000107 Ensembl
RGD
GO_REF:0000052 GO_REF:0000107 NCBI chr18:65,749,107...65,768,805
Ensembl chr18:65,748,908...65,768,781
JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr 4:9,867,132...9,881,383
Ensembl chr 4:9,867,101...9,881,484
JBrowse link
G Rac1 Rac family small GTPase 1 located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 located_in ISO
IEA
(PMID:15121898)
GO_REF:0000107
RGD
Ensembl
PMID:15121898 GO_REF:0000107 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
G Rpl28 ribosomal protein L28 located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr 1:72,619,282...72,621,941
Ensembl chr 1:72,619,282...72,621,519
JBrowse link
G Rpl6 ribosomal protein L6 located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr12:40,877,578...40,882,032
Ensembl chr12:40,877,613...40,881,124
JBrowse link
G Rplp0 ribosomal protein lateral stalk subunit P0 located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr12:46,791,528...46,794,797
Ensembl chr12:46,791,528...46,794,797
JBrowse link
G Rps4x ribosomal protein S4, X-linked located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr  X:72,074,108...72,078,551
Ensembl chr  X:72,074,108...72,078,551
Ensembl chr 4:72,074,108...72,078,551
JBrowse link
G Rps6 ribosomal protein S6 located_in IEA
ISO
GO_REF:0000107
(PMID:15121898)
Ensembl
RGD
PMID:15121898 GO_REF:0000107 NCBI chr 5:105,197,821...105,200,681
Ensembl chr 5:105,197,857...105,200,148
Ensembl chr 5:105,197,857...105,200,148
JBrowse link
G Sarnp SAP domain containing ribonucleoprotein located_in ISO RGD GO_REF:0000052 NCBI chr 7:3,246,220...3,300,467
Ensembl chr 7:3,246,220...3,300,455
JBrowse link
G Serpinb1a serpin family B member 1A located_in ISO RGD GO_REF:0000052 NCBI chr17:32,903,089...32,911,498
Ensembl chr17:32,904,119...32,911,495
JBrowse link
G Shb SH2 domain containing adaptor protein B located_in ISO RGD GO_REF:0000052 NCBI chr 5:60,970,650...61,077,881
Ensembl chr 5:60,971,257...61,077,627
JBrowse link
G Slc39a2 solute carrier family 39 member 2 located_in IEA
ISO
GO_REF:0000107 Ensembl
RGD
GO_REF:0000052 GO_REF:0000107 NCBI chr15:28,295,044...28,297,688
Ensembl chr15:28,295,368...28,297,684
JBrowse link
G Smn1 survival of motor neuron 1, telomeric located_in ISS
ISO
GO_REF:0000024
(PMID:18093976)
UniProt
RGD
PMID:18093976 GO_REF:0000024 NCBI chr 2:30,360,101...30,371,147
Ensembl chr 2:30,360,100...30,371,147
JBrowse link
G Sncaip synuclein, alpha interacting protein located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr18:47,739,284...47,877,679
Ensembl chr18:47,739,140...47,877,676
JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr 3:137,138,082...137,147,575
Ensembl chr 3:137,137,980...137,147,575
JBrowse link
G Socs1 suppressor of cytokine signaling 1 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr10:4,956,795...4,958,472
Ensembl chr10:4,957,326...4,958,461
JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr 3:163,703,204...163,748,996
Ensembl chr 3:163,703,204...163,748,996
JBrowse link
G Taf5l TATA-box binding protein associated factor 5 like located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr19:56,781,854...56,801,005
Ensembl chr19:56,781,859...56,799,445
JBrowse link
G Tstd1 thiosulfate sulfurtransferase like domain containing 1 located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr13:89,805,652...89,807,355
Ensembl chr13:89,805,962...89,807,243
JBrowse link
G Tuba1a tubulin, alpha 1A located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr 7:140,637,287...140,640,953
Ensembl chr 7:140,637,287...140,640,953
JBrowse link
G Tubb5 tubulin, beta 5 class I located_in ISO (PMID:15121898) RGD PMID:15121898 NCBI chr20:3,422,448...3,426,420
Ensembl chr20:3,422,461...3,426,371
JBrowse link
G Tut4 terminal uridylyl transferase 4 located_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr 5:128,063,880...128,168,726
Ensembl chr 5:128,083,118...128,168,207
JBrowse link
G Upf2 UPF2, regulator of nonsense mediated mRNA decay located_in ISO
IEA
GO_REF:0000107 RGD
Ensembl
GO_REF:0000052 GO_REF:0000107 NCBI chr17:76,176,379...76,287,246
Ensembl chr17:76,175,643...76,287,186
JBrowse link
G Usp3 ubiquitin specific peptidase 3 located_in IEA
ISO
GO_REF:0000107 Ensembl
RGD
GO_REF:0000052 GO_REF:0000107 NCBI chr 8:72,207,970...72,284,871
Ensembl chr 8:72,207,972...72,284,873
JBrowse link
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 located_in ISO RGD GO_REF:0000052 NCBI chr 5:150,364,490...150,390,173
Ensembl chr 5:150,365,101...150,390,099
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in
is_active_in
ISO
IBA
PMID:21873635 RGD PMID:21873635 GO_REF:0000052, RGD:13792537 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
G Zc3h12b zinc finger CCCH-type containing 12B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:65,040,032...65,074,857
Ensembl chr  X:65,040,104...65,074,712
JBrowse link
G Zc3h12c zinc finger CCCH type containing 12C is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:56,639,439...56,696,968
Ensembl chr 8:56,641,808...56,696,968
JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D located_in
is_active_in
ISO
IBA
PMID:21873635 RGD PMID:21873635 GO_REF:0000052, RGD:13792537 NCBI chr 1:1,937,620...1,972,919
Ensembl chr 1:1,938,419...1,972,918
JBrowse link
chromatoid body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arntl aryl hydrocarbon receptor nuclear translocator-like located_in ISS
ISO
GO_REF:0000024
(MGI:5447260|PMID:22900038)
UniProt
RGD
PMID:22900038 GO_REF:0000024 MGI:5447260 NCBI chr 1:178,039,002...178,137,469
Ensembl chr 1:178,039,063...178,137,465
JBrowse link
G Clock clock circadian regulator located_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5447260|PMID:22900038)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:22900038 GO_REF:0000024 GO_REF:0000107 MGI:5447260 NCBI chr14:34,418,226...34,502,218
Ensembl chr14:34,446,616...34,502,218
JBrowse link
G Ddx25 DEAD-box helicase 25 located_in IEA
ISO
ISS
GO_REF:0000107
(MGI:3040720|PMID:15096601)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15096601 GO_REF:0000024 GO_REF:0000107 MGI:3040720 NCBI chr 8:36,744,686...36,760,720
Ensembl chr 8:36,744,667...36,760,742
JBrowse link
G Ddx4 DEAD-box helicase 4 located_in IDA
ISO
(MGI:1858321|PMID:10781947), (MGI:5446593|PMID:22792342) RGD PMID:10781947 PMID:22792342, PMID:24141902 MGI:1858321 MGI:5446593, RGD:10755411 NCBI chr 2:44,447,610...44,504,263
Ensembl chr 2:44,447,573...44,504,354
JBrowse link
G Ddx6 DEAD-box helicase 6 IDA RGD PMID:24141902 RGD:10755411 NCBI chr 8:48,924,768...48,961,394
Ensembl chr 8:48,925,604...48,958,026
JBrowse link
G Eif4e eukaryotic translation initiation factor 4E located_in ISO (MGI:5446593|PMID:22792342) RGD PMID:22792342 MGI:5446593 NCBI chr 2:243,819,616...243,853,987
Ensembl chr 2:243,820,661...243,852,631
JBrowse link
G Mael maelstrom spermatogenic transposon silencer located_in ISO (MGI:3655410|PMID:16787967) RGD PMID:16787967 MGI:3655410 NCBI chr13:84,412,569...84,452,140
Ensembl chr13:84,383,670...84,452,181
JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate IDA RGD PMID:21764106 RGD:9685331 NCBI chr20:42,966,140...42,971,838
Ensembl chr20:42,966,140...42,971,838
JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 part_of ISO (MGI:5525987|PMID:23401851) RGD PMID:23401851 MGI:5525987 NCBI chr 1:36,295,650...36,319,906
Ensembl chr 1:36,295,650...36,319,966
JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 located_in ISO (MGI:3640041|PMID:16787948), (MGI:3663970|PMID:16938833), (MGI:5049827|PMID:21539824) RGD PMID:16787948 PMID:16938833 PMID:21539824 MGI:3640041 MGI:3663970 MGI:5049827 NCBI chr12:31,608,641...31,629,961
Ensembl chr12:31,609,053...31,629,881
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 located_in ISO (MGI:3842880|PMID:19114715), (MGI:5049827|PMID:21539824) RGD PMID:19114715 PMID:21539824 MGI:3842880 MGI:5049827 NCBI chr15:52,037,693...52,116,277
Ensembl chr15:52,037,693...52,116,001
JBrowse link
G Slc25a54 solute carrier family 25, member 54 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:211,880,241...211,927,191
Ensembl chr 2:211,880,262...211,925,681
JBrowse link
G Tdrd1 tudor domain containing 1 located_in ISO (MGI:3695528|PMID:17141210) RGD PMID:17141210 MGI:3695528 NCBI chr 1:277,639,670...277,685,236
Ensembl chr 1:277,641,512...277,685,257
JBrowse link
G Tdrd5 tudor domain containing 5 located_in IEA
ISO
ISS
GO_REF:0000107
(MGI:4946318|PMID:21383078)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21383078 GO_REF:0000024 GO_REF:0000107 MGI:4946318 NCBI chr13:73,872,637...73,922,640
Ensembl chr13:73,872,621...73,921,969
JBrowse link
G Tdrd6 tudor domain containing 6 located_in ISO (MGI:3847167|PMID:19345099) RGD PMID:19345099 MGI:3847167 NCBI chr 9:19,917,613...19,932,888
Ensembl chr 9:19,917,603...19,932,920
JBrowse link
G Tdrd7 tudor domain containing 7 located_in ISO (MGI:3695528|PMID:17141210) RGD PMID:17141210 MGI:3695528 NCBI chr 5:61,557,909...61,631,719
Ensembl chr 5:61,564,864...61,631,710
JBrowse link
cytoplasmic stress granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn2 ataxin 2 located_in
is_active_in
ISO
IBA
(PMID:17392519)
PMID:21873635
RGD PMID:17392519, PMID:21873635 RGD:13792537 NCBI chr12:40,264,601...40,335,637
Ensembl chr12:40,266,662...40,332,612
JBrowse link
G Atxn2l ataxin 2-like located_in
is_active_in
ISO
IBA
(PMID:23209657)
PMID:21873635
RGD PMID:23209657, PMID:21873635 RGD:13792537 NCBI chr 1:197,908,087...197,920,400
Ensembl chr 1:197,908,094...197,919,560
JBrowse link
G Bpi bactericidal/permeability-increasing protein located_in ISO (PMID:1937776) RGD PMID:1937776 NCBI chr 3:154,741,627...154,768,584
Ensembl chr 3:154,741,631...154,768,640
JBrowse link
G Caprin1 cell cycle associated protein 1 located_in IEA
ISO
IDA
GO_REF:0000107
(MGI:5296435|PMID:21933836)
PMID:20516077
Ensembl
RGD
PMID:21933836, PMID:20516077 GO_REF:0000107 MGI:5296435, RGD:8554681 NCBI chr 3:93,701,830...93,789,580
Ensembl chr 3:93,702,487...93,789,617
JBrowse link
G Casc3 CASC3 exon junction complex subunit located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:86,724,534...86,744,485
Ensembl chr10:86,724,427...86,745,927
JBrowse link
G Celf1 CUGBP, Elav-like family member 1 part_of ISO (PMID:18164289) RGD PMID:18164289 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Cirbp cold inducible RNA binding protein located_in ISS
ISO
GO_REF:0000024
(MGI:4418610|PMID:17967451)
UniProt
RGD
PMID:17967451 GO_REF:0000024 MGI:4418610 NCBI chr 7:12,400,066...12,405,054
Ensembl chr 7:12,401,207...12,405,022
JBrowse link
G Csde1 cold shock domain containing E1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:205,525,194...205,552,987
Ensembl chr 2:205,525,204...205,552,991
JBrowse link
G Ctsg cathepsin G located_in IEA
ISO
GO_REF:0000107
(PMID:1937776)
Ensembl
RGD
PMID:1937776 GO_REF:0000107 NCBI chr15:35,107,333...35,113,678
Ensembl chr15:35,111,091...35,113,678
JBrowse link
G Ddx1 DEAD-box helicase 1 located_in ISO
ISS
(PMID:18335541)
(MGI:5296435|PMID:21933836)
GO_REF:0000024
RGD
UniProt
PMID:18335541 PMID:21933836 GO_REF:0000024 MGI:5296435 NCBI chr 6:38,422,892...38,453,762
Ensembl chr 6:38,422,888...38,453,797
JBrowse link
G Ddx19a DEAD-box helicase 19A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:43,251,510...43,271,865
Ensembl chr19:43,217,161...43,275,287
JBrowse link
G Ddx19b DEAD-box helicase 19B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:43,217,199...43,246,196
Ensembl chr19:43,217,161...43,275,287
JBrowse link
G Ddx25 DEAD-box helicase 25 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:36,744,686...36,760,720
Ensembl chr 8:36,744,667...36,760,742
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked located_in ISO (PMID:18596238), (PMID:21883093)
(MGI:6368386|PMID:31511697)
RGD PMID:18596238 PMID:21883093 PMID:31511697 MGI:6368386 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Ddx6 DEAD-box helicase 6 located_in
is_active_in
ISO
IBA
(PMID:17392519), (PMID:26184334)
PMID:21873635
RGD PMID:17392519 PMID:26184334, PMID:21873635 RGD:13792537 NCBI chr 8:48,924,768...48,961,394
Ensembl chr 8:48,925,604...48,958,026
JBrowse link
G Dhx36 DEAH-box helicase 36 located_in ISO (PMID:18854321) RGD PMID:18854321 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Dyrk3 dual specificity tyrosine phosphorylation regulated kinase 3 located_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23415227), (PMID:29973724)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23415227 PMID:29973724 GO_REF:0000024 GO_REF:0000107 NCBI chr13:47,906,230...47,916,877
Ensembl chr13:47,906,231...47,916,877
JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha located_in ISS
ISO
GO_REF:0000024
(MGI:4820495|PMID:19861488)
UniProt
RGD
PMID:19861488 GO_REF:0000024 MGI:4820495 NCBI chr 6:102,048,372...102,073,041
Ensembl chr 6:102,048,372...102,073,041
JBrowse link
G Eif4e eukaryotic translation initiation factor 4E located_in ISO
ISS
(PMID:21883093)
GO_REF:0000024
RGD
UniProt
PMID:21883093 GO_REF:0000024 NCBI chr 2:243,819,616...243,853,987
Ensembl chr 2:243,820,661...243,852,631
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 located_in ISS
ISO
GO_REF:0000024
(MGI:6105829|PMID:27616329), (MGI:6148443|PMID:27430620)
UniProt
RGD
PMID:27430620 PMID:27616329 GO_REF:0000024 MGI:6105829 MGI:6148443 NCBI chr12:2,461,502...2,502,432
Ensembl chr12:2,461,502...2,502,432
JBrowse link
G Endov endonuclease V located_in ISO (PMID:31703097)
(PMID:27573237)
RGD PMID:27573237 PMID:31703097 NCBI chr10:108,630,723...108,646,679
Ensembl chr10:108,630,823...108,646,677
JBrowse link
G Fmr1 FMRP translational regulator 1 located_in IDA
ISO
IEA
(MGI:5296435|PMID:21933836)
GO_REF:0000044
RGD
UniProt
PMID:21933836, PMID:16510718, PMID:16919243 GO_REF:0000044 MGI:5296435, RGD:11667962, RGD:10059582 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 located_in ISO (PMID:30404792)
(MGI:3807625|PMID:18625844), (MGI:6148443|PMID:27430620)
RGD PMID:18625844 PMID:27430620 PMID:30404792 MGI:3807625 MGI:6148443 NCBI chr10:40,812,858...40,846,252
Ensembl chr10:40,812,858...40,846,252
JBrowse link
G G3bp2 G3BP stress granule assembly factor 2 located_in ISO (PMID:23279204) RGD PMID:23279204 NCBI chr14:17,437,145...17,523,254
Ensembl chr14:17,492,081...17,520,792
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 located_in ISO (PMID:20696395) RGD PMID:20696395 NCBI chr 9:94,425,191...94,550,431
Ensembl chr 9:94,425,252...94,550,431
JBrowse link
G Grb7 growth factor receptor bound protein 7 located_in ISS
ISO
GO_REF:0000024
(MGI:5284766|PMID:18273060)
UniProt
RGD
PMID:18273060 GO_REF:0000024 MGI:5284766 NCBI chr10:86,393,186...86,408,893
Ensembl chr10:86,399,827...86,409,348
JBrowse link
G Habp4 hyaluronan binding protein 4 located_in ISS
ISO
GO_REF:0000024
(PMID:21771594)
UniProt
RGD
PMID:21771594 GO_REF:0000024 NCBI chr17:1,679,561...1,702,245
Ensembl chr17:1,679,627...1,701,623
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K located_in IEA
ISO
GO_REF:0000107
(MGI:6148443|PMID:27430620)
Ensembl
RGD
PMID:27430620 GO_REF:0000107 MGI:6148443 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 located_in ISO
ISS
(PMID:17101699)
GO_REF:0000024
RGD
UniProt
PMID:17101699 GO_REF:0000024 NCBI chr10:83,774,178...83,823,323
Ensembl chr10:83,780,203...83,822,996
JBrowse link
G Khsrp KH-type splicing regulatory protein located_in IEA
ISO
GO_REF:0000107
(MGI:5296435|PMID:21933836)
Ensembl
RGD
PMID:21933836 GO_REF:0000107 MGI:5296435 NCBI chr 9:10,013,795...10,023,670
Ensembl chr 9:10,013,854...10,022,924
JBrowse link
G Kpna2 karyopherin subunit alpha 2 located_in ISO (MGI:6148443|PMID:27430620) RGD PMID:27430620 MGI:6148443 NCBI chr10:95,200,029...95,212,111
Ensembl chr10:95,200,030...95,212,111
JBrowse link
G Kpnb1 karyopherin subunit beta 1 located_in IEA
ISO
GO_REF:0000107
(MGI:6148443|PMID:27430620)
Ensembl
RGD
PMID:27430620 GO_REF:0000107 MGI:6148443 NCBI chr10:85,096,517...85,124,641
Ensembl chr10:85,093,841...85,124,644
JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator located_in ISO (PMID:25940091) RGD PMID:25940091 NCBI chr10:43,435,738...43,501,186
Ensembl chr10:43,446,526...43,498,066
JBrowse link
G Larp4 La ribonucleoprotein 4 colocalizes_with ISO (PMID:21098120) RGD PMID:21098120 NCBI chr 7:141,630,229...141,676,242 JBrowse link
G Larp4b La ribonucleoprotein 4B located_in ISO (PMID:20573744) RGD PMID:20573744 NCBI chr17:63,236,007...63,317,298
Ensembl chr17:63,265,407...63,314,019
JBrowse link
G Lin28a lin-28 homolog A located_in ISO (PMID:17617744) RGD PMID:17617744 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G LOC100364335 cold shock domain-containing protein E1-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:28,220,255...28,223,601
Ensembl chr 2:205,525,204...205,552,991
Ensembl chr19:205,525,204...205,552,991
JBrowse link
G Lsm14a LSM14A mRNA processing body assembly factor located_in ISO (PMID:16484376), (PMID:17074753) RGD PMID:16484376 PMID:17074753 NCBI chr 1:90,200,866...90,246,292
Ensembl chr 1:90,200,876...90,246,297
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 located_in ISO (PMID:18335541) RGD PMID:18335541 NCBI chr 2:150,698,248...150,867,791
Ensembl chr 2:150,756,185...150,869,690
JBrowse link
G Mcrip1 MAPK regulated co-repressor interacting protein 1 located_in ISO
ISS
(PMID:26184334)
GO_REF:0000024
RGD
UniProt
PMID:26184334 GO_REF:0000024 NCBI chr10:109,720,144...109,727,595
Ensembl chr10:109,720,144...109,722,195
JBrowse link
G Mcrip2 MAPK regulated co-repressor interacting protein 2 located_in ISO (PMID:26184334) RGD PMID:26184334 NCBI chr10:15,230,801...15,235,740
Ensembl chr10:15,230,801...15,235,740
JBrowse link
G Nanos3 nanos C2HC-type zinc finger 3 located_in ISO (MGI:4820495|PMID:19861488) RGD PMID:19861488 MGI:4820495 NCBI chr19:25,284,907...25,288,680
Ensembl chr19:25,284,909...25,288,335
JBrowse link
G Nufip2 nuclear FMR1 interacting protein 2 located_in
is_active_in
ISO
IBA
(PMID:26184334)
PMID:21873635
RGD PMID:26184334, PMID:21873635 RGD:13792537 NCBI chr10:65,168,145...65,200,210
Ensembl chr10:65,176,648...65,200,109
JBrowse link
G Nxf1 nuclear RNA export factor 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:224,957,535...224,970,728
Ensembl chr 1:224,957,517...224,970,727
JBrowse link
G Ogfod1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 located_in ISO (PMID:24550447) RGD PMID:24550447 NCBI chr19:11,425,301...11,451,085
Ensembl chr19:11,425,105...11,451,278
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 located_in
is_active_in
ISS
ISO
IBA
GO_REF:0000024
(PMID:21883093), (PMID:21940797)
PMID:21873635
UniProt
RGD
PMID:21883093 PMID:21940797, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:75,409,581...75,421,874
Ensembl chr 7:75,409,581...75,422,268
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:160,410,733...160,447,073
Ensembl chr 3:160,410,757...160,444,940
JBrowse link
G Pabpc2 poly(A) binding protein, cytoplasmic 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:32,964,763...32,967,031
Ensembl chr18:32,964,763...32,967,031
JBrowse link
G Pabpc4 poly(A) binding protein, cytoplasmic 4 is_active_in
located_in
IBA
ISO
PMID:21873635
(PMID:21940797)
RGD PMID:21940797, PMID:21873635 RGD:13792537 NCBI chr 5:140,978,893...140,994,732
Ensembl chr 5:140,979,435...140,994,732
JBrowse link
G Pabpc4l poly(A) binding protein, cytoplasmic 4-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:130,656,212...130,658,202
Ensembl chr 2:130,656,212...130,658,202
JBrowse link
G Pabpc5 poly A binding protein, cytoplasmic 5 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:92,130,292...92,133,756
Ensembl chr  X:92,131,209...92,132,357
JBrowse link
G Pabpc6 poly(A) binding protein, cytoplasmic 6 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:51,619,875...51,622,951
Ensembl chr 1:51,619,875...51,622,942
JBrowse link
G Pqbp1 polyglutamine binding protein 1 located_in IEA
ISO
GO_REF:0000107
(MGI:5296435|PMID:21933836)
Ensembl
RGD
PMID:21933836 GO_REF:0000107 MGI:5296435 NCBI chr  X:15,448,570...15,453,130
Ensembl chr  X:15,348,138...15,453,130
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 located_in IEA
ISO
GO_REF:0000107
(MGI:6148443|PMID:27430620)
Ensembl
RGD
PMID:27430620 GO_REF:0000107 MGI:6148443 NCBI chr 5:124,568,845...124,642,569
Ensembl chr 5:124,574,079...124,642,569
JBrowse link
G Pum1 pumilio RNA-binding family member 1 located_in ISO (PMID:25340845) RGD PMID:25340845 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Pum2 pumilio RNA-binding family member 2 located_in ISO (PMID:25340845)
(MGI:3629346|PMID:16775137), (MGI:4820495|PMID:19861488)
RGD PMID:16775137 PMID:19861488 PMID:25340845 MGI:3629346 MGI:4820495 NCBI chr 6:33,786,184...33,865,693
Ensembl chr 6:33,786,197...33,865,687
JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 located_in ISO (PMID:29358748) RGD PMID:29358748 NCBI chr10:8,312,961...10,437,778
Ensembl chr10:8,312,961...8,654,892
JBrowse link
G Rbm4 RNA binding motif protein 4 located_in ISO (PMID:17284590) RGD PMID:17284590 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
G Rbpms RNA binding protein, mRNA processing factor located_in ISO (PMID:26347403) RGD PMID:26347403 NCBI chr16:61,954,569...62,109,998
Ensembl chr16:61,954,590...62,096,497
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 located_in ISO (MGI:3580753|PMID:15917799), (MGI:4819285|PMID:20639877), (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) RGD PMID:15917799 PMID:20639877 PMID:26000482 PMID:26255671 MGI:3580753 MGI:4819285 MGI:5706859 MGI:5751631 NCBI chr13:78,723,028...78,794,663
Ensembl chr13:78,722,763...78,789,266
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:21,621,976...21,676,789
Ensembl chr 3:21,623,041...21,670,014
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27037575)
UniProt
Ensembl
RGD
PMID:27037575 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:50,666,444...50,691,523
Ensembl chr 5:50,668,040...50,684,409
JBrowse link
G RGD1562451 similar to Pabpc4_predicted protein is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:3,921,612...3,924,757
Ensembl chr12:3,922,438...3,924,415
JBrowse link
G RGD1564405 similar to mKIAA1321 protein is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:3,675,824...3,678,481
Ensembl chr 5:3,675,833...3,678,201
JBrowse link
G Rnf135 ring finger protein 135 located_in ISO
ISS
(PMID:23950712)
GO_REF:0000024
RGD
UniProt
PMID:23950712 GO_REF:0000024 NCBI chr10:67,531,989...67,551,237 JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:6148443|PMID:27430620)
Ensembl
RGD
PMID:27430620, PMID:21873635 GO_REF:0000107 MGI:6148443, RGD:13792537 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
JBrowse link
G Rptor regulatory associated protein of MTOR, complex 1 located_in ISO (PMID:25940091) RGD PMID:25940091 NCBI chr10:108,750,620...109,058,691
Ensembl chr10:108,750,620...109,058,691
JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 located_in ISO (MGI:4397616|PMID:19825938) RGD PMID:19825938 MGI:4397616 NCBI chr 3:163,703,204...163,748,996
Ensembl chr 3:163,703,204...163,748,996
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IDA RGD PMID:15525674 RGD:10043171 NCBI chr 5:2,257,910...2,497,429 JBrowse link
G Tia1 TIA1 cytotoxic granule-associated RNA binding protein located_in IDA
ISO
(PMID:21984414)
(MGI:5296435|PMID:21933836), (MGI:5302731|PMID:22022532), (MGI:6148443|PMID:27430620)
RGD PMID:21933836 PMID:21984414 PMID:22022532 PMID:27430620, PMID:16055272 MGI:5296435 MGI:5302731 MGI:6148443, RGD:10059581 NCBI chr 4:118,207,845...118,238,246
Ensembl chr 4:118,207,862...118,235,218
JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 located_in IDA
ISO
(MGI:4397616|PMID:19825938), (MGI:4820495|PMID:19861488) RGD PMID:19825938 PMID:19861488, PMID:22555848 MGI:4397616 MGI:4820495, RGD:10059425 NCBI chr 1:199,844,854...199,865,843
Ensembl chr 1:199,844,859...199,865,548
JBrowse link
G Trim25 tripartite motif-containing 25 located_in ISO (PMID:23950712) RGD PMID:23950712 NCBI chr10:76,343,847...76,362,159
Ensembl chr10:76,343,847...76,362,145
JBrowse link
G Vcp valosin-containing protein located_in ISO
ISS
(PMID:29804830)
GO_REF:0000024
RGD
UniProt
PMID:29804830 GO_REF:0000024 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
G Ybx1 Y box binding protein 1 located_in ISS
ISO
GO_REF:0000024
(PMID:18335541)
UniProt
RGD
PMID:18335541 GO_REF:0000024 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link
G Ythdf1 YTH N(6)-methyladenosine RNA binding protein 1 located_in IEA
ISO
GO_REF:0000107
(PMID:32451507)
Ensembl
RGD
PMID:32451507 GO_REF:0000107 NCBI chr 3:176,415,911...176,431,423
Ensembl chr 3:176,415,914...176,431,423
JBrowse link
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 located_in ISO
IEA
(PMID:31292544), (PMID:32451507)
GO_REF:0000107
RGD
Ensembl
PMID:31292544 PMID:32451507 GO_REF:0000107 NCBI chr 5:150,364,490...150,390,173
Ensembl chr 5:150,365,101...150,390,099
JBrowse link
G Ythdf3 YTH N(6)-methyladenosine RNA binding protein 3 located_in ISO
IEA
(PMID:32451507)
GO_REF:0000107
RGD
Ensembl
PMID:32451507 GO_REF:0000107 NCBI chr 2:100,677,388...100,711,365
Ensembl chr 2:100,677,411...100,710,417
JBrowse link
G Zfand1 zinc finger AN1-type containing 1 located_in
is_active_in
ISO
IBA
(PMID:29804830)
PMID:21873635
RGD PMID:29804830, PMID:21873635 RGD:13792537 NCBI chr 2:93,656,895...93,666,745
Ensembl chr 2:93,656,946...93,665,939
JBrowse link
G Zfp36 zinc finger protein 36 located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15014438), (PMID:21964062)
UniProt
Ensembl
RGD
PMID:15014438 PMID:21964062 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
neuronal ribonucleoprotein granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07027799.1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:44,418,972...44,420,596 JBrowse link
G Arc activity-regulated cytoskeleton-associated protein part_of ISO (MGI:5546446|PMID:23936366) RGD PMID:23936366 MGI:5546446 NCBI chr 7:115,907,097...115,911,059
Ensembl chr 7:115,907,097...115,910,541
JBrowse link
G Ckap5 cytoskeleton associated protein 5 part_of ISO (MGI:5546446|PMID:23936366) RGD PMID:23936366 MGI:5546446 NCBI chr 3:80,424,320...80,526,583
Ensembl chr 3:80,468,154...80,526,593
JBrowse link
G Fmr1 FMRP translational regulator 1 located_in ISO (MGI:3798322|PMID:18539120), (MGI:5296435|PMID:21933836) RGD PMID:18539120 PMID:21933836 MGI:3798322 MGI:5296435 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 IDA RGD PMID:14523087 RGD:9685480 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B IDA RGD PMID:21471000 RGD:9999187 NCBI chr10:34,955,713...34,961,662
Ensembl chr10:34,955,716...34,961,608
Ensembl chr10:34,955,716...34,961,608
JBrowse link
G Htt huntingtin IDA RGD PMID:22355657 RGD:6902916 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
G Pqbp1 polyglutamine binding protein 1 located_in IEA
ISO
GO_REF:0000107
(MGI:5296435|PMID:21933836)
Ensembl
RGD
PMID:21933836 GO_REF:0000107 MGI:5296435 NCBI chr  X:15,448,570...15,453,130
Ensembl chr  X:15,348,138...15,453,130
JBrowse link
G RGD1561897 similar to Serine/threonine-protein kinase Kist (Kinase interacting with stathmin) is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,418,463...44,420,729 JBrowse link
G Uhmk1 U2AF homology motif kinase 1 located_in
is_active_in
ISO
IBA
(MGI:3835232|PMID:19015237)
PMID:21873635
RGD PMID:19015237, PMID:21873635 MGI:3835232, RGD:13792537 NCBI chr13:88,521,625...88,536,728
Ensembl chr13:88,521,625...88,536,728
JBrowse link
P granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:150,660,743...150,666,309 JBrowse link
G Carhsp1 calcium regulated heat stable protein 1 located_in ISS
ISO
GO_REF:0000024
(MGI:5320273|PMID:21078874)
UniProt
RGD
PMID:21078874 GO_REF:0000024 MGI:5320273 NCBI chr10:7,041,510...7,055,107
Ensembl chr10:7,041,510...7,055,101
JBrowse link
G Ddx3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  Y:1,217,800...1,238,454
Ensembl chr  Y:1,217,800...1,238,420
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Ddx3y DEAD-box helicase 3, Y-linked is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:105,408,179...105,411,348
Ensembl chr13:105,408,179...105,411,348
JBrowse link
G Ddx4 DEAD-box helicase 4 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:44,447,610...44,504,263
Ensembl chr 2:44,447,573...44,504,354
JBrowse link
G Helz helicase with zinc finger is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:95,767,754...95,911,025
Ensembl chr10:95,770,154...95,906,927
JBrowse link
G Henmt1 HEN methyltransferase 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:211,740,571...211,753,718 JBrowse link
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:91,588,215...91,588,629
Ensembl chr 4:118,167,294...118,174,842
Ensembl chr 1:118,167,294...118,174,842
JBrowse link
G Mael maelstrom spermatogenic transposon silencer located_in
is_active_in
ISO
IBA
(MGI:3655410|PMID:16787967), (MGI:3813746|PMID:18694567)
PMID:21873635
RGD PMID:16787967 PMID:18694567, PMID:21873635 MGI:3655410 MGI:3813746, RGD:13792537 NCBI chr13:84,412,569...84,452,140
Ensembl chr13:84,383,670...84,452,181
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 located_in
is_active_in
ISO
IBA
(MGI:4457283|PMID:20534472)
PMID:21873635
RGD PMID:20534472, PMID:21873635 MGI:4457283, RGD:13792537 NCBI chr 7:129,973,391...130,039,306
Ensembl chr 7:129,973,480...130,037,344
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 located_in ISO (MGI:3815367|PMID:18922463), (MGI:4443217|PMID:20439430) RGD PMID:18922463 PMID:20439430 MGI:3815367 MGI:4443217 NCBI chr15:52,037,693...52,116,277
Ensembl chr15:52,037,693...52,116,001
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 located_in ISS
ISO
GO_REF:0000024
(MGI:3815367|PMID:18922463)
UniProt
RGD
PMID:18922463 GO_REF:0000024 MGI:3815367 NCBI chr 8:13,208,774...13,251,970
Ensembl chr 8:13,208,774...13,251,812
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:118,167,267...118,174,846
Ensembl chr 4:118,167,294...118,174,842
JBrowse link
G Tdrd1 tudor domain containing 1 located_in ISO (MGI:3691397|PMID:17038506), (MGI:4356231|PMID:19465913), (MGI:4443217|PMID:20439430) RGD PMID:17038506 PMID:19465913 PMID:20439430 MGI:3691397 MGI:4356231 MGI:4443217 NCBI chr 1:277,639,670...277,685,236
Ensembl chr 1:277,641,512...277,685,257
JBrowse link
G Tdrd6 tudor domain containing 6 located_in ISO (MGI:3604923|PMID:16093322), (MGI:3695528|PMID:17141210) RGD PMID:16093322 PMID:17141210 MGI:3604923 MGI:3695528 NCBI chr 9:19,917,613...19,932,888
Ensembl chr 9:19,917,603...19,932,920
JBrowse link
G Tdrd7 tudor domain containing 7 located_in ISO (MGI:3695528|PMID:17141210) RGD PMID:17141210 MGI:3695528 NCBI chr 5:61,557,909...61,631,719
Ensembl chr 5:61,564,864...61,631,710
JBrowse link
P-body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002945.1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:89,967,031...90,000,386 JBrowse link
G AABR07066144.1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 9:3,921,406...3,965,939 JBrowse link
G AC126899.1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:44,396,248...44,396,610 JBrowse link
G Ago1 argonaute RISC component 1 located_in ISO (MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:4438512 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 located_in IEA
ISO
GO_REF:0000044
(PMID:20616046), (PMID:22915799), (PMID:23125361)
(MGI:4438512|PMID:19898466)
UniProt
RGD
PMID:19898466 PMID:20616046 PMID:22915799 PMID:23125361 GO_REF:0000044 MGI:4438512 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 located_in ISO (MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:4438512 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Aicda activation-induced cytidine deaminase is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Ajuba ajuba LIM protein located_in
is_active_in
ISS
ISO
IBA
GO_REF:0000024
(PMID:20616046)
PMID:21873635
UniProt
RGD
PMID:20616046, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr15:33,208,210...33,218,456
Ensembl chr15:33,208,216...33,218,456
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 located_in
is_active_in
ISO
IBA
(PMID:22915799)
PMID:21873635
RGD PMID:22915799, PMID:21873635 RGD:13792537 NCBI chr 7:121,108,108...121,128,346
Ensembl chr 7:121,109,241...121,128,542
JBrowse link
G Btbd1 BTB domain containing 1 located_in
is_active_in
ISO
IBA
(PMID:12878161)
PMID:21873635
(MGI:5306319|PMID:12878161)
RGD PMID:12878161, PMID:21873635 MGI:5306319, RGD:13792537 NCBI chr 1:143,609,729...143,647,124
Ensembl chr 1:143,609,731...143,647,124
JBrowse link
G Btbd2 BTB domain containing 2 located_in
is_active_in
ISO
IBA
(PMID:12878161)
PMID:21873635
(MGI:5306319|PMID:12878161)
RGD PMID:12878161, PMID:21873635 MGI:5306319, RGD:13792537 NCBI chr 7:11,929,859...11,943,559
Ensembl chr 7:11,930,135...11,942,799
JBrowse link
G Caprin1 cell cycle associated protein 1 located_in IDA PMID:20516077 UniProt PMID:20516077 RGD:8554681 NCBI chr 3:93,701,830...93,789,580
Ensembl chr 3:93,702,487...93,789,617
JBrowse link
G Carhsp1 calcium regulated heat stable protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:7,041,510...7,055,107
Ensembl chr10:7,041,510...7,055,101
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 located_in
is_active_in
ISO
IBA
(PMID:21976065)
PMID:21873635
(MGI:4431145|PMID:20133598)
RGD PMID:20133598 PMID:21976065, PMID:21873635 MGI:4431145, RGD:13792537 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:59,526,105...59,617,307
Ensembl chr 7:59,527,124...59,587,385
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 located_in
is_active_in
ISO
IBA
(MGI:4431145|PMID:20133598)
PMID:21873635
RGD PMID:20133598, PMID:21873635 MGI:4431145, RGD:13792537 NCBI chr 1:64,130,823...64,147,066
Ensembl chr 1:64,130,908...64,147,251
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 located_in
is_active_in
ISO
IBA
(MGI:3807625|PMID:18625844), (MGI:4431145|PMID:20133598)
PMID:21873635
RGD PMID:18625844 PMID:20133598, PMID:21873635 MGI:3807625 MGI:4431145, RGD:13792537 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:43,538,150...43,551,271
Ensembl chr10:43,538,160...43,551,271
JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:4431145|PMID:20133598)
UniProt
RGD
PMID:20133598, PMID:21873635 GO_REF:0000024 MGI:4431145, RGD:13792537 NCBI chr 9:81,783,349...81,808,815
Ensembl chr 9:81,783,349...81,808,805
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:143,171,457...143,278,485
Ensembl chr 1:143,171,264...143,278,485
JBrowse link
G Csde1 cold shock domain containing E1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:205,525,194...205,552,987
Ensembl chr 2:205,525,204...205,552,991
JBrowse link
G Dcp1a decapping mRNA 1A located_in
is_active_in
ISO
IBA
(MGI:3807625|PMID:18625844), (MGI:4820495|PMID:19861488), (MGI:5432265|PMID:22745163)
PMID:21873635
RGD PMID:18625844 PMID:19861488 PMID:22745163, PMID:21873635 MGI:3807625 MGI:4820495 MGI:5432265, RGD:13792537 NCBI chr16:6,542,415...6,583,856
Ensembl chr16:6,542,216...6,587,619
JBrowse link
G Dcp1b decapping mRNA 1B located_in
is_active_in
ISO
IBA
(MGI:5516374|PMID:24101522)
PMID:21873635
RGD PMID:24101522, PMID:21873635 MGI:5516374, RGD:13792537 NCBI chr 4:151,249,654...151,287,018
Ensembl chr 4:151,250,041...151,285,702
JBrowse link
G Dcp2 decapping mRNA 2 is_active_in
located_in
IBA
ISO
PMID:21873635
(PMID:20616046)
RGD PMID:20616046, PMID:21873635 RGD:13792537 NCBI chr18:35,489,274...35,671,676
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Dcps decapping enzyme, scavenger is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:36,321,992...36,374,665
Ensembl chr 8:36,321,993...36,374,673
JBrowse link
G Ddx6 DEAD-box helicase 6 located_in
part_of
is_active_in
ISO
IBA
(MGI:5614138|PMID:25456498)
(PMID:16699599), (PMID:20616046), (PMID:20826699), (PMID:22915799), (PMID:23125361), (PMID:25995375), (PMID:31422817)
(PMID:22022269)
PMID:21873635
RGD PMID:16699599 PMID:20616046 PMID:20826699 PMID:22022269 PMID:22915799 PMID:23125361 PMID:25456498 PMID:25995375 PMID:31422817, PMID:21873635 MGI:5614138, RGD:13792537 NCBI chr 8:48,924,768...48,961,394
Ensembl chr 8:48,925,604...48,958,026
JBrowse link
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 located_in
is_active_in
ISO
IBA
(PMID:23756462)
PMID:21873635
RGD PMID:23756462, PMID:21873635 RGD:13792537 NCBI chr 9:93,767,837...94,161,106
Ensembl chr 9:93,660,680...94,160,760
JBrowse link
G Edc3 enhancer of mRNA decapping 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:62,482,126...62,527,665
Ensembl chr 8:62,482,140...62,526,202
JBrowse link
G Edc4 enhancer of mRNA decapping 4 is_active_in
located_in
IBA
ISO
PMID:21873635
(PMID:20826699)
RGD PMID:20826699, PMID:21873635 RGD:13792537 NCBI chr19:37,852,659...37,864,651
Ensembl chr19:37,852,659...37,866,355
JBrowse link
G Eif4e eukaryotic translation initiation factor 4E located_in ISS
ISO
GO_REF:0000024
(PMID:16157702), (PMID:20616046), (PMID:24335285)
UniProt
RGD
PMID:16157702 PMID:20616046 PMID:24335285 GO_REF:0000024 NCBI chr 2:243,819,616...243,853,987
Ensembl chr 2:243,820,661...243,852,631
JBrowse link
G Eif4e2 eukaryotic translation initiation factor 4E family member 2 located_in ISO (PMID:23991149) RGD PMID:23991149 NCBI chr 9:94,310,476...94,325,445
Ensembl chr 9:94,307,852...94,336,831
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 located_in ISO (PMID:16157702), (PMID:22966201), (PMID:23991149), (PMID:24335285), (PMID:32354837)
(MGI:5614138|PMID:25456498)
RGD PMID:16157702 PMID:22966201 PMID:23991149 PMID:24335285 PMID:25456498 PMID:32354837 MGI:5614138 NCBI chr14:83,412,843...83,455,694
Ensembl chr14:83,412,968...83,455,456
JBrowse link
G Garre1 granule associated Rac and RHOG effector 1 located_in ISO (PMID:29395067) RGD PMID:29395067 NCBI chr 1:90,097,331...90,176,119
Ensembl chr 1:90,097,334...90,176,105
JBrowse link
G Hax1 HCLS1 associated protein X-1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:189,330,900...189,333,305
Ensembl chr 2:189,330,902...189,333,322
JBrowse link
G Kif5a kinesin family member 5A IDA RGD PMID:23487039 RGD:12791272 NCBI chr 7:70,515,832...70,552,897
Ensembl chr 7:70,513,343...70,556,827
JBrowse link
G Limd1 LIM domain containing 1 is_active_in
located_in
IBA
ISO
PMID:21873635
(PMID:20616046)
RGD PMID:20616046, PMID:21873635 RGD:13792537 NCBI chr 8:132,553,218...132,598,826
Ensembl chr 8:132,553,218...132,598,812
JBrowse link
G Lin28a lin-28 homolog A located_in ISO (PMID:17617744) RGD PMID:17617744 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G LOC100360750 Sm protein F-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:47,380,376...47,382,933
Ensembl chr13:47,380,406...47,382,955
Ensembl chr19:47,380,406...47,382,955
JBrowse link
G LOC100364335 cold shock domain-containing protein E1-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:28,220,255...28,223,601
Ensembl chr 2:205,525,204...205,552,991
Ensembl chr19:205,525,204...205,552,991
JBrowse link
G LOC100912393 mRNA-decapping enzyme 2-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:3,940,948...3,965,964
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G LOC103690064 m7GpppN-mRNA hydrolase-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:35,849,655...35,883,568
Ensembl chr18:35,850,132...35,876,585
Ensembl chr18:35,850,132...35,876,585
JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated located_in
is_active_in
ISO
IBA
(MGI:5614138|PMID:25456498)
PMID:21873635
RGD PMID:25456498, PMID:21873635 MGI:5614138, RGD:13792537 NCBI chr16:71,046,475...71,057,883
Ensembl chr16:71,046,475...71,057,883
JBrowse link
G Lsm14a LSM14A mRNA processing body assembly factor located_in
is_active_in
ISO
IBA
(PMID:16484376), (PMID:17074753)
PMID:21873635
(MGI:5432265|PMID:22745163)
RGD PMID:16484376 PMID:17074753 PMID:22745163, PMID:21873635 MGI:5432265, RGD:13792537 NCBI chr 1:90,200,866...90,246,292
Ensembl chr 1:90,200,876...90,246,297
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,966,817...4,970,567
Ensembl chr20:4,966,817...4,970,568
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:123,162,086...123,168,330
Ensembl chr 4:123,162,086...123,168,330
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:20,506,399...20,511,818
Ensembl chr16:20,506,399...20,511,818
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:32,770,640...32,785,215
Ensembl chr19:32,770,655...32,785,215
JBrowse link
G Mex3a mex-3 RNA binding family member A located_in IEA
ISO
GO_REF:0000107
(PMID:23408853)
Ensembl
RGD
PMID:23408853 GO_REF:0000107 NCBI chr 2:187,893,678...187,902,546
Ensembl chr 2:187,893,368...187,898,310
JBrowse link
G Mex3b mex-3 RNA binding family member B located_in ISO (PMID:23408853) RGD PMID:23408853 NCBI chr 1:144,831,523...144,835,758
Ensembl chr 1:144,831,523...144,835,747
JBrowse link
G Mir23a microRNA 23a located_in ISO (MGI:5516374|PMID:24101522) RGD PMID:24101522 MGI:5516374 NCBI chr19:25,318,582...25,318,656
Ensembl chr19:25,318,582...25,318,656
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase located_in ISO (PMID:16289642), (PMID:24726324), (PMID:27974568) RGD PMID:16289642 PMID:24726324 PMID:27974568 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 located_in ISO (MGI:4431145|PMID:20133598) RGD PMID:20133598 MGI:4431145 NCBI chr 1:79,894,450...79,895,910
Ensembl chr 1:79,894,450...79,895,910
JBrowse link
G Nanos3 nanos C2HC-type zinc finger 3 located_in ISO (MGI:4820495|PMID:19861488) RGD PMID:19861488 MGI:4820495 NCBI chr19:25,284,907...25,288,680
Ensembl chr19:25,284,909...25,288,335
JBrowse link
G Noct nocturnin located_in ISO (MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:3807625 NCBI chr 2:140,286,661...140,306,869
Ensembl chr 2:140,286,661...140,306,869
JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000044
PMID:21873635
(MGI:3807625|PMID:18625844)
UniProt
RGD
PMID:18625844, PMID:21873635 GO_REF:0000044 MGI:3807625, RGD:13792537 NCBI chr 7:2,717,021...2,736,541
Ensembl chr 7:2,718,700...2,736,157
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 located_in
is_active_in
ISO
IBA
(MGI:3807625|PMID:18625844)
PMID:21873635
RGD PMID:18625844, PMID:21873635 MGI:3807625, RGD:13792537 NCBI chr12:9,214,116...9,331,901
Ensembl chr12:9,216,536...9,331,195
JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:20543818), (PMID:20584987), (PMID:20826699), (PMID:20852261)
UniProt
RGD
PMID:20543818 PMID:20584987 PMID:20826699 PMID:20852261, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:228,337,756...228,369,719
Ensembl chr 1:228,337,767...228,369,761
JBrowse link
G Patl2 PAT1 homolog 2 located_in
is_active_in
ISO
IBA
(MGI:4889175|PMID:20826699)
PMID:21873635
RGD PMID:20826699, PMID:21873635 MGI:4889175, RGD:13792537 NCBI chr 3:114,065,814...114,075,404
Ensembl chr 3:114,066,840...114,074,803
JBrowse link
G Pnrc2 proline-rich nuclear receptor coactivator 2 located_in
is_active_in
ISS
IBA
IEA
ISO
GO_REF:0000024
PMID:21873635
GO_REF:0000044
(PMID:19150429)
UniProt
RGD
PMID:19150429, PMID:21873635 GO_REF:0000024 GO_REF:0000044, RGD:13792537 NCBI chr 5:154,220,552...154,223,536
Ensembl chr 5:154,218,852...154,223,536
JBrowse link
G Polr2d RNA polymerase II subunit D is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:24,570,762...24,577,894
Ensembl chr18:24,570,762...24,577,894
JBrowse link
G Polr2g RNA polymerase II subunit G is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:224,991,250...224,998,355
Ensembl chr 1:224,991,222...224,994,653
JBrowse link
G Psma2 proteasome 20S subunit alpha 2 located_in ISS
ISO
GO_REF:0000024
(MGI:5487513|PMID:22078707)
UniProt
RGD
PMID:22078707 GO_REF:0000024 MGI:5487513 NCBI chr17:53,091,937...53,102,324
Ensembl chr17:53,091,933...53,102,342
JBrowse link
G Psma4 proteasome 20S subunit alpha 4 located_in ISS
ISO
GO_REF:0000024
(MGI:5487513|PMID:22078707)
UniProt
RGD
PMID:22078707 GO_REF:0000024 MGI:5487513 NCBI chr 8:59,532,456...59,539,916
Ensembl chr 8:59,532,389...59,539,920
JBrowse link
G Psma6 proteasome 20S subunit alpha 6 located_in ISS
ISO
GO_REF:0000024
(MGI:5487513|PMID:22078707)
UniProt
RGD
PMID:22078707 GO_REF:0000024 MGI:5487513 NCBI chr 6:76,174,460...76,205,429
Ensembl chr 6:76,174,452...76,205,426
JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 located_in ISS
ISO
GO_REF:0000024
(MGI:5487513|PMID:22078707)
UniProt
RGD
PMID:22078707 GO_REF:0000024 MGI:5487513 NCBI chr 4:9,867,132...9,881,383
Ensembl chr 4:9,867,101...9,881,484
JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 located_in ISS
ISO
GO_REF:0000024
(MGI:5487513|PMID:22078707)
UniProt
RGD
PMID:22078707 GO_REF:0000024 MGI:5487513 NCBI chr 3:79,876,938...79,882,319
Ensembl chr 3:79,876,938...79,882,319
JBrowse link
G Pum1 pumilio RNA-binding family member 1 located_in ISO (PMID:20818387) RGD PMID:20818387 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 located_in ISO (MGI:4819285|PMID:20639877), (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671)
(PMID:31636267)
RGD PMID:20639877 PMID:26000482 PMID:26255671 PMID:31636267 MGI:4819285 MGI:5706859 MGI:5751631 NCBI chr13:78,723,028...78,794,663
Ensembl chr13:78,722,763...78,789,266
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:21,621,976...21,676,789
Ensembl chr 3:21,623,041...21,670,014
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27037575)
UniProt
Ensembl
RGD
PMID:27037575 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:50,666,444...50,691,523
Ensembl chr 5:50,668,040...50,684,409
JBrowse link
G Samd4a sterile alpha motif domain containing 4A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:23,666,543...23,879,067
Ensembl chr15:23,665,202...23,878,539
JBrowse link
G Samd4b sterile alpha motif domain containing 4B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:85,324,017...85,362,266
Ensembl chr 1:85,324,043...85,362,241
JBrowse link
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting located_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:27974568)
Ensembl
UniProt
RGD
PMID:27974568 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:21,890,214...21,896,045
Ensembl chr 8:21,890,319...21,896,031
JBrowse link
G Sqstm1 sequestosome 1 located_in ISS
ISO
GO_REF:0000024
(PMID:20357094)
UniProt
RGD
PMID:20357094 GO_REF:0000024 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294
JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 located_in ISO (PMID:24862572) RGD PMID:24862572 NCBI chr 1:41,608,287...41,763,591
NCBI chr 1:41,844,840...42,086,662
Ensembl chr 1:41,608,418...42,077,535
JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A is_active_in
located_in
IBA
ISO
PMID:21873635
(PMID:20616046)
RGD PMID:20616046, PMID:21873635 RGD:13792537 NCBI chr 1:192,991,584...193,146,403
Ensembl chr 1:193,076,430...193,146,394
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Top1 DNA topoisomerase I located_in IEA
ISO
GO_REF:0000107
(PMID:12878161)
Ensembl
RGD
PMID:12878161 GO_REF:0000107 NCBI chr 3:156,635,688...156,717,686
Ensembl chr 3:156,642,464...156,717,686
JBrowse link
G Trim5 tripartite motif-containing 5 located_in ISO (PMID:20357094)
(PMID:12878161)
RGD PMID:12878161 PMID:20357094 NCBI chr 1:169,446,774...169,463,760
Ensembl chr 1:169,446,805...169,534,896
JBrowse link
G Trim71 tripartite motif containing 71 located_in ISS
ISO
GO_REF:0000024
(MGI:4438512|PMID:19898466), (MGI:5319563|PMID:22508726), (MGI:5448492|PMID:22735451)
(PMID:23125361)
UniProt
RGD
PMID:19898466 PMID:22508726 PMID:22735451 PMID:23125361 GO_REF:0000024 MGI:4438512 MGI:5319563 MGI:5448492 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Wtip WT1 interacting protein located_in ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 1:89,966,496...89,999,892 JBrowse link
G Xrn1 5'-3' exoribonuclease 1 located_in IDA
ISO
(MGI:3807625|PMID:18625844) RGD PMID:18625844, PMID:22590546 MGI:3807625, RGD:12791034 NCBI chr 8:103,774,125...103,883,563
Ensembl chr 8:103,774,358...103,878,899
JBrowse link
G Ythdf1 YTH N(6)-methyladenosine RNA binding protein 1 located_in ISO
IEA
(PMID:32492408)
GO_REF:0000107
RGD
Ensembl
PMID:32492408 GO_REF:0000107 NCBI chr 3:176,415,911...176,431,423
Ensembl chr 3:176,415,914...176,431,423
JBrowse link
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 located_in ISO (PMID:24284625), (PMID:31292544), (PMID:32492408) RGD PMID:24284625 PMID:31292544 PMID:32492408 NCBI chr 5:150,364,490...150,390,173
Ensembl chr 5:150,365,101...150,390,099
JBrowse link
G Ythdf3 YTH N(6)-methyladenosine RNA binding protein 3 located_in ISO
IEA
(PMID:32492408)
GO_REF:0000107
RGD
Ensembl
PMID:32492408 GO_REF:0000107 NCBI chr 2:100,677,388...100,711,365
Ensembl chr 2:100,677,411...100,710,417
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in ISO
ISS
(PMID:22055188), (PMID:26134560)
GO_REF:0000024
RGD
UniProt
PMID:22055188 PMID:26134560 GO_REF:0000024 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D located_in ISO (PMID:24415781), (PMID:26134560) RGD PMID:24415781 PMID:26134560 NCBI chr 1:1,937,620...1,972,919
Ensembl chr 1:1,938,419...1,972,918
JBrowse link
G Zfp36 zinc finger protein 36 located_in ISO
IEA
ISS
(PMID:17369404), (PMID:21964062)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17369404 PMID:21964062 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 located_in ISS
ISO
GO_REF:0000024
(PMID:17369404)
UniProt
RGD
PMID:17369404 GO_REF:0000024 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
pi-body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 located_in
is_active_in
ISO
IBA
(MGI:4356194|PMID:19730684)
PMID:21873635
RGD PMID:19730684, PMID:21873635 MGI:4356194, RGD:13792537 NCBI chr 4:45,358,574...45,414,177
Ensembl chr 4:45,358,574...45,414,177
JBrowse link
G Ddx4 DEAD-box helicase 4 located_in ISS
ISO
GO_REF:0000024
(MGI:4417983|PMID:20011505), (MGI:4443217|PMID:20439430), (MGI:5446593|PMID:22792342)
UniProt
RGD
PMID:20011505 PMID:20439430 PMID:22792342 GO_REF:0000024 MGI:4417983 MGI:4443217 MGI:5446593 NCBI chr 2:44,447,610...44,504,263
Ensembl chr 2:44,447,573...44,504,354
JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 located_in ISO (MGI:5470328|PMID:23166510) RGD PMID:23166510 MGI:5470328 NCBI chr 7:129,973,391...130,039,306
Ensembl chr 7:129,973,480...130,037,344
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 located_in ISO (MGI:4356194|PMID:19730684), (MGI:4417983|PMID:20011505), (MGI:4418580|PMID:20059948) RGD PMID:19730684 PMID:20011505 PMID:20059948 MGI:4356194 MGI:4417983 MGI:4418580 NCBI chr15:52,037,693...52,116,277
Ensembl chr15:52,037,693...52,116,001
JBrowse link
G Tdrd1 tudor domain containing 1 located_in ISO (MGI:4417983|PMID:20011505), (MGI:4418580|PMID:20059948), (MGI:4820495|PMID:19861488) RGD PMID:19861488 PMID:20011505 PMID:20059948 MGI:4417983 MGI:4418580 MGI:4820495 NCBI chr 1:277,639,670...277,685,236
Ensembl chr 1:277,641,512...277,685,257
JBrowse link
G Tdrd5 tudor domain containing 5 located_in ISS
ISO
IEA
GO_REF:0000024
(MGI:4946318|PMID:21383078)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:21383078 GO_REF:0000024 GO_REF:0000107 MGI:4946318 NCBI chr13:73,872,637...73,922,640
Ensembl chr13:73,872,621...73,921,969
JBrowse link
G Tdrkh tudor and KH domain containing located_in ISO (MGI:5494327|PMID:23714778) RGD PMID:23714778 MGI:5494327 NCBI chr 2:195,649,813...195,674,217
Ensembl chr 2:195,651,930...195,674,616
JBrowse link
piP-body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx4 DEAD-box helicase 4 located_in ISS
ISO
GO_REF:0000024
(MGI:4417983|PMID:20011505)
UniProt
RGD
PMID:20011505 GO_REF:0000024 MGI:4417983 NCBI chr 2:44,447,610...44,504,263
Ensembl chr 2:44,447,573...44,504,354
JBrowse link
G Mael maelstrom spermatogenic transposon silencer located_in ISO (MGI:4417983|PMID:20011505) RGD PMID:20011505 MGI:4417983 NCBI chr13:84,412,569...84,452,140
Ensembl chr13:84,383,670...84,452,181
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 located_in ISS
ISO
GO_REF:0000024
(MGI:4417983|PMID:20011505), (MGI:4418580|PMID:20059948)
UniProt
RGD
PMID:20011505 PMID:20059948 GO_REF:0000024 MGI:4417983 MGI:4418580 NCBI chr 8:13,208,774...13,251,970
Ensembl chr 8:13,208,774...13,251,812
JBrowse link
G Tdrd9 tudor domain containing 9 located_in ISS
ISO
GO_REF:0000024
(MGI:4417983|PMID:20011505), (MGI:4418580|PMID:20059948)
UniProt
RGD
PMID:20011505 PMID:20059948 GO_REF:0000024 MGI:4417983 MGI:4418580 NCBI chr 6:136,536,636...136,650,481
Ensembl chr 6:136,536,736...136,649,859
JBrowse link
G Tdrkh tudor and KH domain containing located_in ISO (MGI:5494327|PMID:23714778) RGD PMID:23714778 MGI:5494327 NCBI chr 2:195,649,813...195,674,217
Ensembl chr 2:195,651,930...195,674,616
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20131
    cellular anatomical entity 19832
      cytoplasm 11415
        cytoplasmic ribonucleoprotein granule 245
          GW body 0
          P granule + 22
          P-body + 91
          RNP body 0
          TIS granule 0
          Z granule 0
          chromatoid body 16
          cytoplasmic stress granule 79
          mutator focus 0
          neuronal ribonucleoprotein granule 10
Path 2
Term Annotations click to browse term
  cellular_component 20131
    cellular anatomical entity 19832
      organelle 13134
        non-membrane-bounded organelle 4910
          intracellular non-membrane-bounded organelle 4910
            ribonucleoprotein granule 260
              cytoplasmic ribonucleoprotein granule 245
                GW body 0
                P granule + 22
                P-body + 91
                RNP body 0
                TIS granule 0
                Z granule 0
                chromatoid body 16
                cytoplasmic stress granule 79
                mutator focus 0
                neuronal ribonucleoprotein granule 10
paths to the root