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ONTOLOGY REPORT - ANNOTATIONS

Term:2'-deoxyribonucleotide biosynthetic process
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Accession:GO:0009265 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a 2'-deoxyribonucleotide, a compound consisting of 2'-deoxyribonucleoside (a base linked to a 2'-deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: 2'-deoxyribonucleotide anabolism;   2'-deoxyribonucleotide biosynthesis;   2'-deoxyribonucleotide formation;   2'-deoxyribonucleotide synthesis


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2'-deoxyribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RRM1 ribonucleotide reductase catalytic subunit M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:3,956,528...3,999,205
Ensembl chr11:4,068,119...4,110,474 		JBrowse link
G RRM2 ribonucleotide reductase regulatory subunit M2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:10,119,508...10,128,318
Ensembl chr2A:10,275,598...10,284,640 		JBrowse link
G RRM2B ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:98,854,101...98,890,365
Ensembl chr 8:101,019,699...101,052,056 		JBrowse link
dAMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADK adenosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:70,672,967...71,236,950
Ensembl chr10:73,342,900...73,902,490 		JBrowse link
G DCK deoxycytidine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:53,193,475...53,230,708
Ensembl chr 4:59,536,997...59,574,537 		JBrowse link
G DGUOK deoxyguanosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:74,000,969...74,032,993
Ensembl chr2A:75,510,768...75,542,563 		JBrowse link
dATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADK adenosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12163459) Ensembl
MGI		 PMID:12163459 GO_REF:0000107 NCBI chr10:70,672,967...71,236,950
Ensembl chr10:73,342,900...73,902,490 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr 1:46,642,602...46,673,568 JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 involved_in ISO (PMID:31201273) RGD
UniProt		 PMID:4307347 PMID:31201273 RGD:5147877 NCBI chr 1:203,541,866...203,550,827
Ensembl chr 1:208,753,657...208,765,857 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chr2A:6,856,242...6,874,567 JBrowse link
G DTYMK deoxythymidylate kinase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8845311) RGD
MGI
TreeGrafter
Ensembl
InterPro		 PMID:220041 PMID:8845311 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:5133687 NCBI chr2B:128,952,009...128,963,640
Ensembl chr2B:247,740,881...247,752,504 		JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:27,280,025...27,292,003
Ensembl chr15:45,603,807...45,616,022 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) BHF-UCL PMID:19513116 MGI:3849912 NCBI chr17:32,870,949...32,905,690
Ensembl chr17:37,849,206...37,884,220 		JBrowse link
G TYMS thymidylate synthetase involved_in ISO
IEA		 RGD
TreeGrafter
InterPro
Ensembl		 PMID:9894005 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1545055 NCBI chr18:13,653,085...13,668,478
Ensembl chr18:17,295,182...17,310,320 		JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTYMK deoxythymidylate kinase involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:220041 GO_REF:0000118 RGD:5133687 NCBI chr2B:128,952,009...128,963,640
Ensembl chr2B:247,740,881...247,752,504 		JBrowse link
G TBPL1 TATA-box binding protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11861477) Ensembl
MGI		 PMID:11861477 GO_REF:0000107 NCBI chr 6:131,719,606...131,754,960
Ensembl chr 6:135,817,613...135,852,876 		JBrowse link
G TYMS thymidylate synthetase involved_in IEA UniProt GO_REF:0000041 NCBI chr18:13,653,085...13,668,478
Ensembl chr18:17,295,182...17,310,320 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr 1:46,642,602...46,673,568 JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chr2A:6,856,242...6,874,567 JBrowse link
G DTYMK deoxythymidylate kinase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:128,952,009...128,963,640
Ensembl chr2B:247,740,881...247,752,504 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO
IEA		 RGD
TreeGrafter
UniProt
InterPro		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 RGD:2300191 RGD:2301218 NCBI chr15:27,280,025...27,292,003
Ensembl chr15:45,603,807...45,616,022 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16442
    metabolic process 10307
      organic substance metabolic process 9873
        carbohydrate derivative metabolic process 1037
          deoxyribonucleotide metabolic process 40
            deoxyribonucleotide biosynthetic process 14
              2'-deoxyribonucleotide biosynthetic process 14
                purine deoxyribonucleotide biosynthetic process + 4
                pyrimidine deoxyribonucleotide biosynthetic process + 7
Path 2
Term Annotations click to browse term
  biological_process 16442
    metabolic process 10307
      organic substance metabolic process 9873
        organic cyclic compound metabolic process 5564
          nucleobase-containing compound metabolic process 5111
            nucleobase-containing small molecule metabolic process 606
              nucleoside phosphate metabolic process 540
                nucleoside phosphate biosynthetic process 225
                  nucleotide biosynthetic process 222
                    deoxyribonucleotide biosynthetic process 14
                      2'-deoxyribonucleotide biosynthetic process 14
                        purine deoxyribonucleotide biosynthetic process + 4
                        pyrimidine deoxyribonucleotide biosynthetic process + 7
paths to the root