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ONTOLOGY REPORT - ANNOTATIONS

Term:deoxyribonucleotide biosynthetic process
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Accession:GO:0009263 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: deoxyribonucleotide anabolism;   deoxyribonucleotide biosynthesis;   deoxyribonucleotide formation;   deoxyribonucleotide synthesis


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deoxyribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in ISO
IBA		 (MGI:3846285|PMID:19176520)
PMID:21873635		 RGD PMID:19176520 PMID:21873635 MGI:3846285, RGD:13792537 NCBI chr 1:156,823,960...156,848,262
Ensembl chr 1:156,823,960...156,848,261 		JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 involved_in ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:3846285|PMID:19176520)		 UniProt
RGD		 PMID:19176520 PMID:21873635 GO_REF:0000024 MGI:3846285, RGD:13792537 NCBI chr 6:41,339,858...41,346,774
Ensembl chr 6:41,340,557...41,346,773 		JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:2152627|PMID:11517226)
PMID:21873635		 RGD PMID:11517226 PMID:21873635 MGI:2152627, RGD:13792537 NCBI chr 7:69,077,024...69,108,742
Ensembl chr 7:69,078,291...69,108,633 		JBrowse link
2'-deoxyribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in ISO (PMID:16376858)
(MGI:6810812|PMID:12578384)		 RGD PMID:12578384 PMID:16376858 MGI:6810812 NCBI chr 1:156,823,960...156,848,262
Ensembl chr 1:156,823,960...156,848,261 		JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 involved_in ISO
IEA		 (PMID:16376858)
GO_REF:0000107
(MGI:6810812|PMID:12578384)		 RGD
Ensembl		 PMID:12578384 PMID:16376858 GO_REF:0000107 MGI:6810812 NCBI chr 6:41,339,858...41,346,774
Ensembl chr 6:41,340,557...41,346,773 		JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in ISO (PMID:16376858) RGD PMID:16376858 NCBI chr 7:69,077,024...69,108,742
Ensembl chr 7:69,078,291...69,108,633 		JBrowse link
dAMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase involved_in ISO
IEA		 (MGI:6717101|PMID:2835956)
GO_REF:0000107		 RGD
Ensembl		 PMID:2835956 GO_REF:0000107 MGI:6717101 NCBI chr15:2,863,241...3,246,453
Ensembl chr15:2,863,244...3,246,510 		JBrowse link
G Dck deoxycytidine kinase involved_in ISO
IEA		 (MGI:6717103|PMID:8748457)
GO_REF:0000107		 RGD
Ensembl		 PMID:8748457 GO_REF:0000107 MGI:6717103 NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247 		JBrowse link
G Dguok deoxyguanosine kinase involved_in ISO (PMID:19221117) RGD PMID:19221117 NCBI chr 4:115,987,101...116,014,733
Ensembl chr 4:115,979,094...116,014,733 		JBrowse link
dATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:3620422|PMID:12163459)		 Ensembl
RGD		 PMID:12163459 GO_REF:0000107 MGI:3620422 NCBI chr15:2,863,241...3,246,453
Ensembl chr15:2,863,244...3,246,510 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:192455 RGD:5133256 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 involved_in IDA
ISO		 (PMID:31201273) RGD PMID:31201273 PMID:4307347 RGD:5147877 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:192455 PMID:21873635 RGD:5133256, RGD:13792537 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in
acts_upstream_of_or_within		 IDA
IBA
ISO		 PMID:21873635
(PMID:12614151)
(MGI:77260|PMID:8845311)		 RGD PMID:8845311 PMID:12614151 PMID:220041 PMID:21873635 MGI:77260, RGD:5133687, RGD:13792537 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) RGD PMID:10952785 PMID:15322254 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:45,468,698...45,497,820
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Tyms thymidylate synthetase involved_in IDA
IEA
IBA
ISO		 GO_REF:0000002
PMID:21873635
(MGI:5300404|PMID:22057276)
(PMID:11278511), (PMID:15093541), (PMID:8845352)		 InterPro
RGD		 PMID:8845352 PMID:11278511 PMID:15093541 PMID:22057276 PMID:9894005 More... GO_REF:0000002 MGI:5300404, RGD:1545055, RGD:13792537 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:220041 PMID:21873635 RGD:5133687, RGD:13792537 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2182539 (MGI:2159505|PMID:11861477) RGD PMID:11861477 MGI:2159505 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122 		JBrowse link
G Tyms thymidylate synthetase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:3010881 RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:192455 PMID:21873635 RGD:5133256, RGD:13792537 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IBA
IEA		 PMID:21873635
GO_REF:0000041		 UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt
RGD		 PMID:3032103 PMID:21873635 PMID:1315924 GO_REF:0000041, RGD:2300191, RGD:13792537, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G ENSRNOG00000069939 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 Ensembl chr13:67,763,505...67,765,634 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19818
    metabolic process 12096
      biosynthetic process 6307
        organic substance biosynthetic process 6218
          carbohydrate derivative biosynthetic process 642
            deoxyribonucleotide biosynthetic process 16
              2'-deoxyribonucleotide biosynthetic process + 16
Path 2
Term Annotations click to browse term
  biological_process 19818
    metabolic process 12096
      cellular metabolic process 7496
        cellular aromatic compound metabolic process 3078
          nucleobase-containing compound metabolic process 2826
            nucleobase-containing small molecule metabolic process 573
              nucleoside phosphate metabolic process 500
                nucleotide metabolic process 489
                  nucleotide biosynthetic process 264
                    deoxyribonucleotide biosynthetic process 16
                      2'-deoxyribonucleotide biosynthetic process + 16
paths to the root