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ONTOLOGY REPORT - ANNOTATIONS

Term:U12-type spliceosomal complex
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Accession:GO:0005689 term browser browse the term
Definition:Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site.
Synonyms:exact_synonym: minor (U12-type) spliceosomal complex;   minor spliceosomal complex
 narrow_synonym: AT-AC spliceosomal complex
 xref: Wikipedia:Minor_spliceosome
 never_in_taxon: NCBITaxon:4890 ! Ascomycota


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U12-type spliceosomal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G Dhx15 DEAH-box helicase 15 part_of ISO (PMID:15146077) RGD PMID:15146077 NCBI chr14:58,787,147...58,825,083
Ensembl chr14:58,787,127...58,825,088 		JBrowse link
G ENSRNOG00000063333 part_of IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:93,293,758...93,294,114 JBrowse link
G LOC120100604 small nuclear ribonucleoprotein G-like part_of IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 2:186,400,521...186,402,953
Ensembl chr 2:186,400,857...186,401,087 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,856,698...8,859,113
Ensembl chr 7:8,856,489...8,859,119 		JBrowse link
G Pdcd7 programmed cell death 7 part_of ISO
IBA		 (PMID:15146077)
GO_REF:0000033		 RGD
GO_Central		 PMID:15146077 GO_REF:0000033 NCBI chr 8:65,862,606...65,877,333
Ensembl chr 8:65,862,387...65,877,333 		JBrowse link
G Phf5a PHD finger protein 5A part_of ISO
IEA
IBA		 (PMID:15146077)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:15146077 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:113,378,469...113,385,035
Ensembl chr 7:113,378,471...113,385,460 		JBrowse link
G Rbm41 RNA binding motif protein 41 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:103,605,732...103,660,381
Ensembl chr  X:103,608,585...103,660,381 		JBrowse link
G Rnpc3 RNA-binding region (RNP1, RRM) containing 3 part_of ISO
IEA
IBA		 (PMID:15146077)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:15146077 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:201,432,769...201,457,015
Ensembl chr 2:201,432,684...201,456,747 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 part_of ISO
IBA		 (PMID:15146077)
GO_REF:0000033		 RGD
GO_Central		 PMID:15146077 GO_REF:0000033 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300 		JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 part_of ISO
IBA		 (PMID:15146077)
GO_REF:0000033		 RGD
GO_Central		 PMID:15146077 GO_REF:0000033 NCBI chr 1:202,570,423...202,590,774
Ensembl chr 1:202,570,423...202,590,759 		JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 part_of ISO (PMID:15146077) RGD PMID:15146077 NCBI chr19:38,782,749...38,820,271
Ensembl chr19:38,783,040...38,820,245 		JBrowse link
G Sf3b4 splicing factor 3B subunit 4 part_of ISO
IEA
IBA		 (PMID:15146077)
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033		 RGD
Ensembl
TreeGrafter
GO_Central		 PMID:15146077 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:183,732,791...183,737,545
Ensembl chr 2:183,732,754...183,737,959 		JBrowse link
G Sf3b5 splicing factor 3b, subunit 5 part_of ISO (PMID:15146077) RGD PMID:15146077 NCBI chr 1:7,357,040...7,357,752
Ensembl chr 1:7,350,731...7,357,839 		JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 part_of ISO
IBA		 (PMID:15146077)
GO_REF:0000033		 RGD
GO_Central		 PMID:15146077 GO_REF:0000033 NCBI chr 6:27,826,044...27,835,086
Ensembl chr 6:27,826,029...27,835,156 		JBrowse link
G Snrnp25 small nuclear ribonucleoprotein U11/U12 subunit 25 part_of ISO
IBA		 (PMID:15146077)
GO_REF:0000033		 RGD
GO_Central		 PMID:15146077 GO_REF:0000033 NCBI chr10:15,420,482...15,423,806
Ensembl chr10:15,420,486...15,423,804 		JBrowse link
G Snrnp35 small nuclear ribonucleoprotein U11/U12 subunit 35 part_of ISO
IEA
IBA		 (PMID:15146077)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:15146077 GO_REF:0000033 GO_REF:0000107 NCBI chr12:32,112,032...32,119,829
Ensembl chr12:32,110,993...32,122,660 		JBrowse link
G Snrnp48 small nuclear ribonucleoprotein U11/U12 subunit 48 part_of ISO
IBA		 (PMID:15146077)
GO_REF:0000033		 RGD
GO_Central		 PMID:15146077 GO_REF:0000033 NCBI chr17:26,596,266...26,616,058
Ensembl chr17:26,596,275...26,616,040 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISO (PMID:15146077) RGD PMID:15146077 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of ISO
IBA		 (PMID:15146077)
GO_REF:0000033		 RGD
GO_Central		 PMID:15146077 GO_REF:0000033 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO (PMID:15146077) RGD PMID:15146077 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO
IBA		 (PMID:15146077)
GO_REF:0000033		 RGD
GO_Central		 PMID:15146077 GO_REF:0000033 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpd3l1 small nuclear ribonucleoprotein D3 polypeptide like 1 part_of IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr19:12,396,026...12,396,454
Ensembl chr19:12,396,026...12,396,454 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO (PMID:15146077) RGD PMID:15146077 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:15146077) RGD PMID:15146077 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO
IEA
IBA		 (PMID:15146077)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:15146077 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826 		JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 part_of IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:87,982,629...87,983,056
Ensembl chr 1:87,982,626...87,983,118
Ensembl chr 4:87,982,626...87,983,118 		JBrowse link
G Ybx1 Y box binding protein 1 part_of ISO
IEA		 (PMID:15146077)
GO_REF:0000107		 RGD
Ensembl		 PMID:15146077 GO_REF:0000107 NCBI chr 5:132,882,137...132,898,885
Ensembl chr 5:132,882,145...132,898,862 		JBrowse link
G Zcrb1 zinc finger CCHC-type and RNA binding motif containing 1 part_of ISO
IEA
IBA		 (PMID:15146077)
GO_REF:0000002
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033		 RGD
InterPro
Ensembl
TreeGrafter
GO_Central		 PMID:15146077 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:124,525,227...124,538,564
Ensembl chr 7:124,524,870...124,571,261 		JBrowse link
G Zmat5 zinc finger, matrin type 5 part_of ISO
IBA		 (PMID:15146077)
GO_REF:0000033		 RGD
GO_Central		 PMID:15146077 GO_REF:0000033 NCBI chr14:79,568,644...79,599,595
Ensembl chr14:79,568,758...79,599,594 		JBrowse link
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 part_of ISO (PMID:15146077), (PMID:21041408) RGD PMID:15146077 PMID:21041408 NCBI chr  X:30,547,424...30,571,613
Ensembl chr  X:30,547,536...30,570,125 		JBrowse link
G Zrsr2-ps1 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2, pseudogene 1 part_of ISO (MGI:6192413|PMID:29617656) RGD PMID:29617656 MGI:6192413 NCBI chr14:96,972,651...96,978,364
Ensembl chr14:96,972,580...96,978,891 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21392
    protein-containing complex 6987
      nuclear protein-containing complex 1383
        spliceosomal complex 263
          U12-type spliceosomal complex 32
            U12-type catalytic step 1 spliceosome 0
            U12-type catalytic step 2 spliceosome 0
            U12-type post-mRNA release spliceosomal complex 0
            U12-type post-spliceosomal complex 0
            U12-type precatalytic spliceosome 0
            U12-type prespliceosome 0
Path 2
Term Annotations click to browse term
  cellular_component 21392
    cellular anatomical entity 21234
      organelle 14344
        membrane-bounded organelle 12919
          intracellular membrane-bounded organelle 12331
            nucleus 7726
              nuclear protein-containing complex 1383
                spliceosomal complex 263
                  U12-type spliceosomal complex 32
                    U12-type catalytic step 1 spliceosome 0
                    U12-type catalytic step 2 spliceosome 0
                    U12-type post-mRNA release spliceosomal complex 0
                    U12-type post-spliceosomal complex 0
                    U12-type precatalytic spliceosome 0
                    U12-type prespliceosome 0
paths to the root