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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of podosome assembly
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Accession:GO:0071801 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of podosome assembly.
Comment:Note that the assembly is regulated by several small GTPases of the Rab and Rho families.


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regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GSN gelsolin involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:74,248,227...74,268,129
Ensembl chr11:74,233,457...74,268,129 		JBrowse link
G HCK HCK proto-oncogene, Src family tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:21,473,424...21,513,673
Ensembl chr24:21,473,305...21,513,564 		JBrowse link
G KIF9 kinesin family member 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:41,587,202...41,637,768
Ensembl chr20:41,588,443...41,637,781 		JBrowse link
negative regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 acts_upstream_of_or_within ISO (PMID:21352810) MGI PMID:21352810 NCBI chr 7:41,835,322...41,850,488
Ensembl chr 7:41,812,353...41,850,488 		JBrowse link
positive regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGEF5 Rho guanine nucleotide exchange factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21525037) Ensembl
MGI		 PMID:21525037 GO_REF:0000107 NCBI chr16:5,648,947...5,673,488
Ensembl chr16:5,649,944...5,673,568 		JBrowse link
G ARPC2 actin related protein 2/3 complex subunit 2 ISO RGD PMID:17224451 RGD:2306207 NCBI chr37:24,914,389...24,935,998
Ensembl chr37:24,914,642...24,935,824 		JBrowse link
G CAPG capping actin protein, gelsolin like NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chr17:39,619,429...39,640,944
Ensembl chr17:39,619,248...39,640,942 		JBrowse link
G CSF2 colony stimulating factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:20,342,880...20,346,959
Ensembl chr11:20,344,648...20,346,959 		JBrowse link
G FSCN1 fascin actin-bundling protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:12,360,849...12,370,906
Ensembl chr 6:12,354,599...12,370,808 		JBrowse link
G IL5 interleukin 5 involved_in ISO (PMID:15220135) BHF-UCL PMID:15220135 NCBI chr11:20,825,469...20,827,269
Ensembl chr11:20,825,469...20,827,269 		JBrowse link
G LCP1 lymphocyte cytosolic protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:4,955,453...5,059,654
Ensembl chr22:4,992,347...5,059,636 		JBrowse link
G MAPK8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (PMID:24127566) MGI PMID:24127566 NCBI chr28:323,361...410,367
Ensembl chr28:368,513...406,401 		JBrowse link
G MAPK9 mitogen-activated protein kinase 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24127566) Ensembl
MGI		 PMID:24127566 GO_REF:0000107 NCBI chr11:1,443,528...1,480,501
Ensembl chr11:1,443,547...1,478,119 		JBrowse link
G MSN moesin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24127566) Ensembl
MGI		 PMID:24127566 GO_REF:0000107 NCBI chr  X:50,708,913...50,775,404
Ensembl chr  X:50,708,704...50,773,762 		JBrowse link
G PALLD palladin, cytoskeletal associated protein ISO RGD PMID:16868024 RGD:2325783 NCBI chr25:19,147,310...19,568,712
Ensembl chr25:19,146,898...19,553,679 		JBrowse link
G RHOA ras homolog family member A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21525037) Ensembl
MGI		 PMID:21525037 GO_REF:0000107 NCBI chr20:39,824,552...39,888,089
Ensembl chr20:39,824,575...39,887,215 		JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21525037), (PMID:24127566) Ensembl
MGI		 PMID:21525037 PMID:24127566 GO_REF:0000107 NCBI chr24:25,982,499...26,019,748
Ensembl chr24:25,999,048...26,018,077 		JBrowse link
G TNF tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,074,561...1,076,425
Ensembl chr12:1,074,552...1,076,425 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17924
    cellular process 16927
      regulation of cellular process 11572
        regulation of cellular component biogenesis 1176
          regulation of organelle assembly 272
            regulation of podosome assembly 18
              negative regulation of podosome assembly 1
              positive regulation of podosome assembly 14
Path 2
Term Annotations click to browse term
  biological_process 17924
    cellular process 16927
      cellular component organization or biogenesis 6960
        cellular component biogenesis 3470
          cellular component assembly 3170
            organelle assembly 1068
              non-membrane-bounded organelle assembly 447
                podosome assembly 27
                  regulation of podosome assembly 18
                    negative regulation of podosome assembly 1
                    positive regulation of podosome assembly 14
paths to the root