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ONTOLOGY REPORT - ANNOTATIONS

Term:pyridoxal phosphate binding
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Accession:GO:0030170 term browser browse the term
Definition:Binding to pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.


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pyridoxal phosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AADAT aminoadipate aminotransferase enables IEA InterPro GO_REF:0000002 NCBI chr 4:162,283,569...162,313,720
Ensembl chr 4:174,353,766...174,383,471 		JBrowse link
G ABAT 4-aminobutyrate aminotransferase enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr16:7,609,282...7,718,049
Ensembl chr16:8,888,178...8,958,420 		JBrowse link
G ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) enables IEA InterPro GO_REF:0000002 NCBI chr11:44,026,501...44,044,928
Ensembl chr11:44,522,797...44,699,447 		JBrowse link
G ACCSL 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like enables IEA InterPro GO_REF:0000002 NCBI chr11:44,008,231...44,020,156
Ensembl chr11:44,426,872...44,515,148 		JBrowse link
G AGXT alanine--glyoxylate aminotransferase enables IEA Ensembl GO_REF:0000107 NCBI chr2B:128,125,289...128,137,091
Ensembl chr2B:246,928,784...246,939,837 		JBrowse link
G AGXT2 alanine--glyoxylate aminotransferase 2 enables IEA InterPro GO_REF:0000002 NCBI chr 5:75,322,351...75,373,261
Ensembl chr 5:80,601,554...80,652,575 		JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 enables IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 3:52,140,423...52,156,656
Ensembl chr 3:53,369,522...53,385,361 		JBrowse link
G ALAS2 5'-aminolevulinate synthase 2 enables IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr  X:47,219,588...47,241,592
Ensembl chr  X:55,451,794...55,473,680 		JBrowse link
G ALB albumin enables IEA Ensembl GO_REF:0000107 NCBI chr 4:50,773,244...50,790,474
Ensembl chr 4:56,605,322...56,622,418 		JBrowse link
G CBS cystathionine beta-synthase enables IEA Ensembl GO_REF:0000107 NCBI chr21:29,361,519...29,385,610
Ensembl chr21:42,670,530...42,690,932 		JBrowse link
G CISD1 CDGSH iron sulfur domain 1 enables IEA Ensembl GO_REF:0000107 NCBI chr10:54,800,423...54,822,134
Ensembl chr10:57,020,351...57,041,928 		JBrowse link
G CSAD cysteine sulfinic acid decarboxylase enables IEA InterPro GO_REF:0000002 NCBI chr12:35,572,064...35,598,077
Ensembl chr12:36,354,437...36,379,738 		JBrowse link
G CTH cystathionine gamma-lyase enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:69,646,608...69,674,301
Ensembl chr 1:71,629,333...71,677,666 		JBrowse link
G DDC dopa decarboxylase enables ISO
IEA		 RGD
InterPro		 PMID:8422386 GO_REF:0000002 RGD:4139896 NCBI chr 7:51,101,169...51,206,031
Ensembl chr 7:51,345,228...51,449,710 		JBrowse link
G ETNPPL ethanolamine-phosphate phospho-lyase enables IEA InterPro GO_REF:0000002 NCBI chr 4:101,244,460...101,265,672
Ensembl chr 4:111,815,226...111,836,412 		JBrowse link
G GAD1 glutamate decarboxylase 1 enables ISO
IEA		 RGD
InterPro		 PMID:1880546 GO_REF:0000002 RGD:6480263 NCBI chr2B:58,100,623...58,145,045
Ensembl chr2B:175,558,538...175,602,944 		JBrowse link
G GAD2 glutamate decarboxylase 2 enables ISO
IEA		 RGD
InterPro		 PMID:1880546 GO_REF:0000002 RGD:6480263 NCBI chr10:26,392,877...26,481,859
Ensembl chr10:26,759,243...26,843,197 		JBrowse link
G GADL1 glutamate decarboxylase like 1 enables IEA InterPro GO_REF:0000002 NCBI chr 3:30,655,701...30,824,656
Ensembl chr 3:30,975,196...31,142,703 		JBrowse link
G GCAT glycine C-acetyltransferase enables IEA InterPro GO_REF:0000002 NCBI chr22:18,722,886...18,731,963
Ensembl chr22:36,554,067...36,563,429 		JBrowse link
G GLDC glycine decarboxylase enables ISO
IEA		 RGD
TreeGrafter		 PMID:6778858 GO_REF:0000118 RGD:1642728 NCBI chr 9:6,347,381...6,456,042
Ensembl chr 9:6,527,242...6,635,779 		JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 enables IEA InterPro GO_REF:0000002 NCBI chr10:96,012,345...96,046,266
Ensembl chr10:99,506,205...99,540,178 		JBrowse link
G GOT1L1 glutamic-oxaloacetic transaminase 1 like 1 enables IEA InterPro GO_REF:0000002 NCBI chr 8:37,234,593...37,241,464
Ensembl chr 8:34,412,465...34,418,343 		JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 enables ISO
IEA		 RGD
InterPro		 PMID:12686151 PMID:14522984 GO_REF:0000002 RGD:1582383 RGD:2289396 NCBI chr16:38,995,770...39,022,750
Ensembl chr16:58,120,781...58,147,378 		JBrowse link
G GPT glutamic--pyruvic transaminase enables IEA InterPro GO_REF:0000002 Ensembl chr 8:144,259,991...144,263,737 JBrowse link
G GPT2 glutamic--pyruvic transaminase 2 enables IEA InterPro GO_REF:0000002 NCBI chr16:27,150,159...27,197,006
Ensembl chr16:46,040,439...46,086,840 		JBrowse link
G HDC histidine decarboxylase enables ISO
IEA		 RGD
InterPro		 PMID:5898 PMID:4449071 PMID:7075603 PMID:9525922 PMID:12204113 More... GO_REF:0000002 RGD:2303726 RGD:2303727 RGD:2303728 RGD:2303733 RGD:2303734 RGD:2303735 NCBI chr15:29,188,296...29,212,327
Ensembl chr15:47,510,629...47,534,577 		JBrowse link
G KYAT1 kynurenine aminotransferase 1 enables IEA InterPro GO_REF:0000002 NCBI chr 9:99,956,240...100,004,366
Ensembl chr 9:128,623,946...128,637,844 		JBrowse link
G KYAT3 kynurenine aminotransferase 3 enables IEA InterPro GO_REF:0000002 NCBI chr 1:91,636,681...91,708,859
Ensembl chr 1:90,403,072...90,460,426 		JBrowse link
G KYNU kynureninase enables ISO
IEA		 RGD
UniProt
InterPro		 PMID:7451426 GO_REF:0000002 GO_REF:0000104 RGD:2290547 NCBI chr2B:16,792,401...16,947,766
Ensembl chr2B:146,975,995...147,132,634 		JBrowse link
G LOC134730274 glycine dehydrogenase (decarboxylating), mitochondrial-like enables IEA TreeGrafter GO_REF:0000118
G MOCOS molybdenum cofactor sulfurase enables IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr18:29,440,016...29,542,105
Ensembl chr18:32,998,769...33,080,053 		JBrowse link
G MTARC1 mitochondrial amidoxime reducing component 1 enables IEA InterPro GO_REF:0000002 NCBI chr 1:196,373,028...196,405,115
Ensembl chr 1:201,407,390...201,435,186 		JBrowse link
G MTARC2 mitochondrial amidoxime reducing component 2 enables IEA InterPro GO_REF:0000002 NCBI chr 1:196,333,803...196,371,147
Ensembl chr 1:201,369,424...201,405,602 		JBrowse link
G NFS1 NFS1 cysteine desulfurase enables IEA InterPro GO_REF:0000002 NCBI chr20:31,994,509...32,026,776 JBrowse link
G OAT ornithine aminotransferase enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr10:120,955,805...120,977,484
Ensembl chr10:125,224,032...125,245,504 		JBrowse link
G PDXK pyridoxal kinase enables IEA Ensembl GO_REF:0000107 NCBI chr21:29,977,286...30,021,266
Ensembl chr21:43,273,237...43,313,637 		JBrowse link
G PHYKPL 5-phosphohydroxy-L-lysine phospho-lyase enables IEA InterPro GO_REF:0000002 NCBI chr 5:173,368,383...173,394,377
Ensembl chr 5:180,625,530...180,651,618 		JBrowse link
G PLPBP pyridoxal phosphate binding protein enables IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 8:37,060,599...37,081,250
Ensembl chr 8:34,238,411...34,258,846 		JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase enables IEA Ensembl GO_REF:0000107 NCBI chr17:9,589,253...9,596,973
Ensembl chr17:9,773,052...9,778,922 		JBrowse link
G PSAT1 phosphoserine aminotransferase 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:46,517,253...46,550,018
Ensembl chr 9:77,147,493...77,180,439 		JBrowse link
G PYGB glycogen phosphorylase B enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr20:25,191,066...25,242,955
Ensembl chr20:25,593,589...25,648,066 		JBrowse link
G PYGL glycogen phosphorylase L enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr14:31,494,172...31,533,545
Ensembl chr14:49,746,309...49,832,786 		JBrowse link
G PYGM glycogen phosphorylase, muscle associated enables ISO
IEA		 RGD
TreeGrafter
InterPro		 PMID:11692172 GO_REF:0000002 GO_REF:0000118 RGD:1599897 NCBI chr11:60,101,810...60,115,813
Ensembl chr11:63,443,609...63,457,430 		JBrowse link
G SDS serine dehydratase enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr12:110,995,164...111,006,668
Ensembl chr12:114,377,650...114,388,839 		JBrowse link
G SDSL serine dehydratase like enables IEA InterPro GO_REF:0000002 NCBI chr12:111,024,957...111,040,900
Ensembl chr12:114,406,738...114,422,347 		JBrowse link
G SGPL1 sphingosine-1-phosphate lyase 1 enables IEA InterPro GO_REF:0000002 NCBI chr10:67,286,349...67,351,574
Ensembl chr10:69,812,092...69,876,438 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 enables ISO
IEA		 RGD
TreeGrafter
Ensembl
InterPro		 PMID:3110140 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2300383 NCBI chr17:32,870,949...32,905,690
Ensembl chr17:37,849,206...37,884,220 		JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 enables ISO
IEA		 RGD
TreeGrafter
Ensembl
InterPro		 PMID:3110140 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2300383 NCBI chr12:31,692,451...31,697,727
Ensembl chr12:31,944,785...31,950,138 		JBrowse link
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 enables IEA InterPro GO_REF:0000002 NCBI chr 9:63,087,798...63,174,977 JBrowse link
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 enables IEA InterPro GO_REF:0000002 NCBI chr14:58,066,123...58,170,472
Ensembl chr14:77,266,545...77,370,663 		JBrowse link
G SPTLC3 serine palmitoyltransferase long chain base subunit 3 enables IEA InterPro GO_REF:0000002 NCBI chr20:12,966,584...13,125,802
Ensembl chr20:12,952,524...13,111,347 		JBrowse link
G SRR serine racemase enables ISO
IEA		 RGD
TreeGrafter
InterPro
Ensembl		 PMID:9892700 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2302218 NCBI chr17:2,294,440...2,316,244
Ensembl chr17:2,182,839...2,200,704 		JBrowse link
G TAT tyrosine aminotransferase enables IEA InterPro GO_REF:0000002 NCBI chr16:53,434,028...53,443,624
Ensembl chr16:71,404,399...71,413,886 		JBrowse link
G THNSL2 threonine synthase like 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:87,303,022...87,319,494
Ensembl chr2A:89,212,442...89,228,446 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 17686
    binding 16286
      organic cyclic compound binding 5337
        vitamin B6 binding 55
          pyridoxal phosphate binding 54
Path 2
Term Annotations click to browse term
  molecular_function 17686
    binding 16286
      small molecule binding 5376
        ion binding 5151
          anion binding 2261
            pyridoxal phosphate binding 54
paths to the root