PNPO (pyridoxamine 5'-phosphate oxidase) - Rat Genome Database

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Gene: PNPO (pyridoxamine 5'-phosphate oxidase) Pan paniscus
Analyze
Symbol: PNPO
Name: pyridoxamine 5'-phosphate oxidase
RGD ID: 12047577
Description: ENCODES a protein that exhibits FMN binding (ortholog); protein homodimerization activity (ortholog); pyridoxal phosphate binding (ortholog); INVOLVED IN pyridoxal phosphate biosynthetic process (ortholog); PARTICIPATES IN hypophosphatasia pathway; vitamin B6 metabolic pathway; ASSOCIATED WITH distal hereditary motor neuronopathy type 5 (ortholog); epilepsy (ortholog); pyridoxamine 5'-phosphate oxidase deficiency (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: pyridoxine-5'-phosphate oxidase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1179,773,052 - 9,778,922 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,773,052 - 9,778,922 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0179,589,253 - 9,596,973 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
PNPO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1179,773,052 - 9,778,922 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,773,052 - 9,778,922 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0179,589,253 - 9,596,973 (-)NCBIMhudiblu_PPA_v0panPan3
PNPO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1747,941,506 - 47,949,308 (+)EnsemblGRCh38hg38GRCh38
GRCh381747,941,524 - 47,949,308 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371746,018,937 - 46,026,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,373,916 - 43,381,673 (+)NCBINCBI36hg18NCBI36
Build 341743,373,935 - 43,380,653NCBI
Celera1742,471,698 - 42,479,495 (+)NCBI
Cytogenetic Map17q21.32NCBI
HuRef1741,387,555 - 41,395,352 (+)NCBIHuRef
CHM1_11746,083,871 - 46,091,657 (+)NCBICHM1_1
Pnpo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,828,642 - 96,834,845 (-)NCBIGRCm39mm39
GRCm39 Ensembl1196,828,651 - 96,834,812 (-)Ensembl
GRCm381196,937,816 - 96,944,019 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,937,825 - 96,943,986 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,799,130 - 96,805,333 (-)NCBIGRCm37mm9NCBIm37
MGSCv361196,753,917 - 96,770,309 (-)NCBImm8
Celera11106,585,705 - 106,591,891 (-)NCBICelera
Cytogenetic Map11DNCBI
Pnpo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21081,924,584 - 81,930,844 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1081,924,569 - 81,930,871 (-)Ensembl
Rnor_6.01084,874,926 - 84,881,190 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,874,927 - 84,881,190 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,665,835 - 84,672,099 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11545,408,393 - 45,421,097NCBI
Celera1080,686,370 - 80,692,634 (-)NCBICelera
Cytogenetic Map10q31NCBI
Pnpo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,183,826 - 13,191,707 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,184,861 - 13,190,933 (-)NCBIChiLan1.0ChiLan1.0
PNPO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,252,895 - 24,258,523 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,252,964 - 24,258,106 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha923,719,116 - 23,724,734 (+)NCBI
ROS_Cfam_1.0925,046,154 - 25,052,008 (+)NCBI
UMICH_Zoey_3.1923,816,257 - 23,821,968 (+)NCBI
UNSW_CanFamBas_1.0924,077,084 - 24,082,942 (+)NCBI
UU_Cfam_GSD_1.0924,203,867 - 24,209,469 (+)NCBI
Pnpo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560223,693,129 - 23,700,206 (+)NCBI
SpeTri2.0NW_00493649013,374,925 - 13,382,037 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNPO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,192,897 - 24,201,414 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,192,848 - 24,201,419 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,993,281 - 23,998,372 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PNPO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11668,338,847 - 68,360,492 (+)NCBI
ChlSab1.1 Ensembl1668,338,936 - 68,344,050 (+)Ensembl
Vero_WHO_p1.0NW_02366607739,393,051 - 39,398,955 (+)NCBI
Pnpo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247954,574,902 - 4,580,884 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000053194   ⟹   ENSPPAP00000030334
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl179,773,052 - 9,778,922 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000053204   ⟹   ENSPPAP00000030344
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl179,773,682 - 9,778,774 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000053206   ⟹   ENSPPAP00000030346
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl179,773,682 - 9,778,774 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000053210   ⟹   ENSPPAP00000030350
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl179,775,778 - 9,778,774 (-)Ensembl
RefSeq Acc Id: XM_003827488   ⟹   XP_003827536
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1179,773,052 - 9,778,922 (-)NCBI
Mhudiblu_PPA_v0179,589,253 - 9,596,970 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008952828   ⟹   XP_008951076
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1179,773,052 - 9,778,880 (-)NCBI
Mhudiblu_PPA_v0179,590,916 - 9,596,648 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034941535   ⟹   XP_034797426
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0179,590,916 - 9,596,973 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003827536 (Get FASTA)   NCBI Sequence Viewer  
  XP_008951076 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797426 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003827536   ⟸   XM_003827488
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008951076   ⟸   XM_008952828
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_034797426   ⟸   XM_034941535
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000030344   ⟸   ENSPPAT00000053204
RefSeq Acc Id: ENSPPAP00000030346   ⟸   ENSPPAT00000053206
RefSeq Acc Id: ENSPPAP00000030350   ⟸   ENSPPAT00000053210
RefSeq Acc Id: ENSPPAP00000030334   ⟸   ENSPPAT00000053194


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038148 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000030334 ENTREZGENE
NCBI Gene PNPO ENTREZGENE