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ONTOLOGY REPORT - ANNOTATIONS

Term:striatum development
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Accession:GO:0021756 term browser browse the term
Definition:The progression of the striatum over time from its initial formation until its mature state. The striatum is a region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.
Synonyms:exact_synonym: neostriatum development;   striate nucleus development


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striatum development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS1 Bardet-Biedl syndrome 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18032602) Ensembl
MGI		 PMID:18032602 GO_REF:0000107 NCBI chr 2:5,886,989...5,906,468
Ensembl chr 2:5,886,990...5,906,388 		JBrowse link
G BBS2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chr 6:18,542,383...18,575,338
Ensembl chr 6:18,542,386...18,575,514 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18032602) Ensembl
MGI		 PMID:18032602 GO_REF:0000107 NCBI chr 7:60,631,913...60,693,359
Ensembl chr 7:60,631,914...60,693,334 		JBrowse link
G CNTNAP2 contactin associated protein 2 involved_in ISO (PMID:18179893) BHF-UCL PMID:18179893 NCBI chr 9:109,740,510...111,781,144 JBrowse link
G DRD1 dopamine receptor D1 acts_upstream_of_or_within ISO (PMID:17360497) RGD
MGI		 PMID:17360497 PMID:22015925 RGD:7248608 NCBI chr16:49,189,555...49,193,722
Ensembl chr16:49,189,602...49,191,976 		JBrowse link
G DRD2 dopamine receptor D2 ISO RGD PMID:22015925 RGD:7248608 NCBI chr 9:41,068,618...41,135,262
Ensembl chr 9:41,068,779...41,133,599 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO RGD PMID:18565716 RGD:13204724 NCBI chr 1:31,724,290...31,796,594
Ensembl chr 1:31,722,721...31,796,595 		JBrowse link
G FOXP1 forkhead box P1 ISO RGD PMID:12815709 RGD:11536004 NCBI chr13:52,346,844...52,974,358
Ensembl chr13:52,348,234...52,876,892 		JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9886073) Ensembl
MGI		 PMID:9886073 GO_REF:0000107 NCBI chr  X:110,321,144...110,357,902
Ensembl chr  X:110,321,204...110,357,894 		JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (PMID:17715336)
(PMID:11030759)		 MGI PMID:11030759 PMID:17715336 NCBI chr 8:1,809,768...1,934,002
Ensembl chr 8:1,809,785...1,934,024 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 ISO RGD PMID:18272292 RGD:13462055 NCBI chr 5:71,800,337...71,945,828
Ensembl chr 5:71,800,225...71,945,828 		JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:12605461 RGD:12790706 NCBI chr  X:124,735,523...124,789,063
Ensembl chr  X:124,735,656...124,738,659 		JBrowse link
G MKKS MKKS centrosomal shuttling protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18032602) Ensembl
MGI		 PMID:18032602 GO_REF:0000107 NCBI chr17:19,341,024...19,363,007
Ensembl chr17:19,341,636...19,362,871 		JBrowse link
G OGDH oxoglutarate dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:50,609,415...50,684,990
Ensembl chr18:50,609,418...50,684,964 		JBrowse link
G RARB retinoic acid receptor beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18443282) Ensembl
MGI		 PMID:18443282 GO_REF:0000107 NCBI chr13:12,336,387...12,507,688
Ensembl chr13:12,336,972...12,507,680 		JBrowse link
G SECISBP2 SECIS binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24844465) Ensembl
MGI		 PMID:24844465 GO_REF:0000107 NCBI chr14:911,985...955,978
Ensembl chr14:912,015...955,974 		JBrowse link
G SLC7A11 solute carrier family 7 member 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17035536) Ensembl
MGI		 PMID:17035536 GO_REF:0000107 NCBI chr 8:88,608,083...88,690,589
Ensembl chr 8:88,608,174...88,687,250 		JBrowse link
G SLITRK5 SLIT and NTRK like family member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20418887) Ensembl
MGI		 PMID:20418887 GO_REF:0000107 NCBI chr11:57,792,576...57,800,852
Ensembl chr11:57,792,665...57,800,846 		JBrowse link
caudate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP2 forkhead box P2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:31,335,102...31,890,523
Ensembl chr18:31,335,264...31,888,845 		JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17207476) Ensembl
MGI		 PMID:17207476 GO_REF:0000107 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,511 		JBrowse link
putamen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP2 forkhead box P2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:31,335,102...31,890,523
Ensembl chr18:31,335,264...31,888,845 		JBrowse link
striatal medium spiny neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL11B BCL11 transcription factor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18199763) Ensembl
MGI		 PMID:18199763 GO_REF:0000107 NCBI chr 7:120,205,008...120,295,737
Ensembl chr 7:120,205,008...120,295,936 		JBrowse link
G INHBA inhibin subunit beta A involved_in ISO (PMID:25804741) ParkinsonsUK-UCL PMID:25804741 NCBI chr12:53,115,379...53,117,128
NCBI chr18:52,889,684...52,909,260
Ensembl chr18:52,889,684...52,900,967 		JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (MGI:4948759|PMID:21423165) BHF-UCL PMID:21423165 MGI:4948759 NCBI chr 5:41,376...93,033
Ensembl chr 5:41,786...93,177 		JBrowse link
G ZSWIM6 zinc finger SWIM-type containing 6 involved_in ISO (MGI:6140923|PMID:28433741) UniProt PMID:28433741 MGI:6140923 NCBI chr16:40,105,499...40,305,379
Ensembl chr16:40,105,227...40,305,197 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17638
    developmental process 6678
      anatomical structure development 6281
        striatum development 24
          caudate nucleus development 1
          nucleus accumbens development 1
          putamen development 1
          striatal medium spiny neuron differentiation 4
Path 2
Term Annotations click to browse term
  biological_process 17638
    developmental process 6678
      anatomical structure development 6281
        multicellular organism development 5074
          system development 4418
            nervous system development 2757
              central nervous system development 1185
                brain development 885
                  forebrain development 548
                    telencephalon development 380
                      subpallium development 30
                        striatum development 24
                          caudate nucleus development 1
                          nucleus accumbens development 1
                          putamen development 1
                          striatal medium spiny neuron differentiation 4
paths to the root