CNTNAP2 (contactin associated protein 2) - Rat Genome Database

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Gene: CNTNAP2 (contactin associated protein 2) Sus scrofa
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Symbol: CNTNAP2
Name: contactin associated protein 2
RGD ID: 14184890
Description: ENCODES a protein that exhibits enzyme binding (ortholog); PDZ domain binding (ortholog); protease binding (ortholog); INVOLVED IN action potential initiation (ortholog); adult behavior (ortholog); associative learning (ortholog); ASSOCIATED WITH articulation disorder (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN axolemma (ortholog); axon (ortholog); axon initial segment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: contactin associated protein like 2; LOW QUALITY PROTEIN: contactin-associated protein-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.19109,740,510 - 111,781,144 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29120,886,243 - 121,579,520 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
action potential initiation  (ISO)
adult behavior  (ISO)
associative learning  (ISO)
axonogenesis  (ISO)
behavioral response to pain  (ISO)
cell morphogenesis  (ISO)
cell population proliferation  (ISO)
cellular protein localization  (ISO)
central nervous system myelination  (ISO)
cerebellar Purkinje cell layer morphogenesis  (ISO)
cerebellum development  (ISO)
cerebral cortex development  (ISO)
chemical synaptic transmission  (ISO)
circadian sleep/wake cycle  (ISO)
clustering of voltage-gated potassium channels  (ISO)
dendrite arborization  (ISO)
dendritic spine development  (ISO)
dendritic spine maintenance  (ISO)
dendritic spine organization  (ISO)
embryonic brain development  (ISO)
ERK1 and ERK2 cascade  (ISO)
excitatory chemical synaptic transmission  (ISO)
excitatory postsynaptic potential  (ISO)
excitatory synapse assembly  (ISO)
fat cell differentiation  (ISO)
gene expression  (ISO)
glial cell proliferation  (ISO)
glutamatergic neuron differentiation  (ISO)
grooming behavior  (ISO)
in utero embryonic development  (ISO)
inflammatory response  (ISO)
inhibitory chemical synaptic transmission  (ISO)
inhibitory synapse assembly  (ISO)
intracellular signal transduction  (ISO)
learning  (ISO)
limbic system development  (ISO)
locomotor rhythm  (ISO)
locomotory behavior  (ISO)
maintenance of synapse structure  (ISO)
mitochondrion organization  (ISO)
motor behavior  (ISO)
multicellular organism growth  (ISO)
myelination  (ISO)
negative regulation of neuronal action potential  (ISO)
negative regulation of synaptic transmission, GABAergic  (ISO)
neural precursor cell proliferation  (ISO)
neuromuscular junction development, skeletal muscle fiber  (ISO)
neuromuscular process  (ISO)
neuromuscular process controlling posture  (ISO)
neuron projection development  (ISO)
neuron projection morphogenesis  (ISO)
neuronal action potential  (ISO)
positive regulation of gap junction assembly  (ISO)
positive regulation of neuronal action potential  (ISO)
postsynaptic density organization  (ISO)
prepulse inhibition  (ISO)
protein kinase B signaling  (ISO)
protein localization to juxtaparanode region of axon  (ISO)
response to dietary excess  (ISO)
response to heat  (ISO)
response to hormone  (ISO)
response to interleukin-17  (ISO)
response to light intensity  (ISO)
response to mechanical stimulus  (ISO)
response to metformin  (ISO)
response to odorant  (ISO)
response to organic substance  (ISO)
response to pain  (ISO)
response to xenobiotic stimulus  (ISO)
rhythmic behavior  (ISO)
social behavior  (ISO)
startle response  (ISO)
striatum development  (ISO)
superior temporal gyrus development  (ISO)
thalamus development  (ISO)
TOR signaling  (ISO)
transmission of nerve impulse  (ISO)
vocal learning  (ISO)
vocalization behavior  (ISO)
walking behavior  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
CNTNAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.19109,740,510 - 111,781,144 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29120,886,243 - 121,579,520 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNTNAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7146,116,002 - 148,420,998 (+)EnsemblGRCh38hg38GRCh38
GRCh387146,116,207 - 148,420,998 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377145,813,893 - 148,118,090 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367145,444,386 - 147,749,019 (+)NCBINCBI36hg18NCBI36
Build 347145,251,476 - 147,555,734NCBI
Celera7140,486,396 - 142,788,651 (+)NCBI
Cytogenetic Map7q35-q36.1NCBI
HuRef7139,891,239 - 142,197,449 (+)NCBIHuRef
CHM1_17145,822,316 - 148,126,480 (+)NCBICHM1_1
CRA_TCAGchr7v27145,151,433 - 147,456,408 (+)NCBI
Cntnap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39645,036,995 - 47,278,330 (+)NCBIGRCm39mm39
GRCm39 Ensembl645,036,291 - 47,281,147 (+)Ensembl
GRCm38645,060,061 - 47,301,393 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl645,059,357 - 47,304,213 (+)EnsemblGRCm38mm10GRCm38
MGSCv37645,010,060 - 47,251,387 (+)NCBIGRCm37mm9NCBIm37
MGSCv36644,989,695 - 47,230,955 (+)NCBImm8
Celera644,970,994 - 47,154,076 (+)NCBICelera
Cytogenetic Map6B2.2- B2.3NCBI
Cntnap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2474,109,455 - 76,366,434 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl474,109,472 - 76,362,027 (+)Ensembl
Rnor_6.0474,700,539 - 77,025,463 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04140,006,078 - 140,855,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04141,164,125 - 141,697,964 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4474,277,978 - 75,440,178 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1475,661,775 - 75,716,308 (+)NCBI
Celera468,984,397 - 71,173,021 (+)NCBICelera
Cytogenetic Map4q24NCBI
Cntnap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554911,984,050 - 3,981,830 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554911,983,002 - 3,982,510 (+)NCBIChiLan1.0ChiLan1.0
CNTNAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17150,344,805 - 152,632,198 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7150,345,240 - 152,626,818 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07137,858,607 - 140,150,820 (+)NCBIMhudiblu_PPA_v0panPan3
CNTNAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1162,239,953 - 4,208,718 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl162,243,918 - 4,208,416 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha163,343,504 - 5,308,739 (-)NCBI
ROS_Cfam_1.0162,046,017 - 4,067,208 (-)NCBI
UMICH_Zoey_3.1162,032,477 - 4,003,070 (-)NCBI
UNSW_CanFamBas_1.0161,891,758 - 3,867,350 (-)NCBI
UU_Cfam_GSD_1.0161,896,111 - 3,930,992 (-)NCBI
Cntnap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051188,151,620 - 10,043,987 (-)NCBI
SpeTri2.0NW_0049365272,859,442 - 4,748,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTNAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121114,741,918 - 116,988,691 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607212,636,077 - 12,937,176 (+)NCBIVero_WHO_p1.0
Cntnap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248007,182,588 - 9,280,407 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021102606   ⟹   XP_020958265
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19109,740,510 - 111,781,144 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020958265 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020958265   ⟸   XM_021102606
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene CNTNAP2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-16 CNTNAP2  contactin associated protein 2  CNTNAP2  contactin associated protein like 2  Symbol and/or name change 5135510 APPROVED