RARB (retinoic acid receptor beta) - Rat Genome Database

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Gene: RARB (retinoic acid receptor beta) Sus scrofa
Analyze
Symbol: RARB
Name: retinoic acid receptor beta
RGD ID: 14140574
Description: ENCODES a protein that exhibits heterocyclic compound binding (ortholog); nuclear retinoid X receptor binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN apoptotic process (ortholog); bone development (ortholog); cell population proliferation (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); asbestos-related lung carcinoma (ortholog); autism spectrum disorder (ortholog); FOUND IN nucleoplasm (ortholog); INTERACTS WITH bifenthrin
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1312,336,972 - 12,507,680 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11312,336,387 - 12,507,688 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21313,948,616 - 14,119,377 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bifenthrin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:9241041  


Genomics

Comparative Map Data
RARB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1312,336,972 - 12,507,680 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11312,336,387 - 12,507,688 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21313,948,616 - 14,119,377 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RARB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38324,829,321 - 25,597,932 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl324,687,887 - 25,597,932 (+)EnsemblGRCh38hg38GRCh38
GRCh37324,870,812 - 25,639,423 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36325,444,758 - 25,614,424 (+)NCBINCBI36Build 36hg18NCBI36
Build 34325,444,757 - 25,614,424NCBI
Celera325,406,007 - 25,576,301 (+)NCBICelera
Cytogenetic Map3p24.2NCBI
HuRef325,415,219 - 25,584,899 (+)NCBIHuRef
CHM1_1325,419,771 - 25,589,413 (+)NCBICHM1_1
T2T-CHM13v2.0324,833,434 - 25,600,779 (+)NCBIT2T-CHM13v2.0
Rarb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39145,387,365 - 6,038,924 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl145,650,540 - 6,038,924 (+)EnsemblGRCm39 Ensembl
GRCm381416,430,839 - 17,082,331 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1416,430,839 - 16,819,156 (-)EnsemblGRCm38mm10GRCm38
MGSCv371417,263,353 - 17,407,724 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361415,224,106 - 15,368,477 (-)NCBIMGSCv36mm8
Celera1412,125,158 - 12,276,529 (-)NCBICelera
Cytogenetic Map14A1NCBI
cM Map147.08NCBI
Rarb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2158,700,533 - 9,051,288 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl158,406,492 - 9,051,288 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1511,048,162 - 11,193,786 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01511,960,913 - 12,106,574 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01510,261,418 - 10,407,054 (+)NCBIRnor_WKY
Rnor_6.0159,915,223 - 10,262,599 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1510,120,206 - 10,262,599 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01513,963,567 - 14,307,996 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera158,949,068 - 9,094,754 (+)NCBICelera
Cytogenetic Map15p16NCBI
Rarb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543017,295,174 - 17,460,045 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543017,067,536 - 17,457,558 (+)NCBIChiLan1.0ChiLan1.0
RARB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1324,793,311 - 25,563,309 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0324,729,220 - 25,499,187 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1325,660,850 - 25,830,372 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl325,660,922 - 25,833,297 (+)Ensemblpanpan1.1panPan2
RARB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12318,207,253 - 18,931,128 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2318,207,760 - 18,482,652 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2318,204,235 - 18,714,201 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02318,509,719 - 19,020,664 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2318,509,722 - 18,682,067 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12318,328,357 - 18,839,472 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02318,431,214 - 18,948,405 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02318,545,126 - 19,056,015 (-)NCBIUU_Cfam_GSD_1.0
Rarb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118183,488,653 - 184,007,944 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647316,983,600 - 17,148,885 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647316,983,829 - 17,146,517 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RARB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11569,851,447 - 70,266,215 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1570,096,117 - 70,264,905 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604142,594,825 - 43,404,888 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rarb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247883,257,697 - 3,493,132 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247882,738,341 - 3,493,140 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012278   ⟹   ENSSSCP00000076836
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1312,336,972 - 12,507,680 (+)Ensembl
RefSeq Acc Id: XM_005669304   ⟹   XP_005669361
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11312,336,387 - 12,507,688 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005669361 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB40153 (Get FASTA)   NCBI Sequence Viewer  
  AAG41132 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005669361   ⟸   XM_005669304
- Sequence:
RefSeq Acc Id: ENSSSCP00000076836   ⟸   ENSSSCT00000012278
Protein Domains
NR LBD   Nuclear receptor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011212 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00015059448 UniProtKB/TrEMBL
  ENSSSCG00025018872 UniProtKB/TrEMBL
  ENSSSCG00030012886 UniProtKB/TrEMBL
  ENSSSCG00035039329 UniProtKB/TrEMBL
  ENSSSCG00040068239 UniProtKB/TrEMBL
  ENSSSCG00045011769 UniProtKB/TrEMBL
  ENSSSCG00050047537 UniProtKB/TrEMBL
  ENSSSCG00055005247 UniProtKB/TrEMBL
  ENSSSCG00065067560 UniProtKB/TrEMBL
  ENSSSCG00070017708 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000076836.1 UniProtKB/TrEMBL
  ENSSSCP00015032062.1 UniProtKB/TrEMBL
  ENSSSCP00015032088.1 UniProtKB/TrEMBL
  ENSSSCP00025010819.1 UniProtKB/TrEMBL
  ENSSSCP00030007870.1 UniProtKB/TrEMBL
  ENSSSCP00030007876.1 UniProtKB/TrEMBL
  ENSSSCP00035020999.1 UniProtKB/TrEMBL
  ENSSSCP00035021004.1 UniProtKB/TrEMBL
  ENSSSCP00040041260.1 UniProtKB/TrEMBL
  ENSSSCP00040041316.1 UniProtKB/TrEMBL
  ENSSSCP00045013710.1 UniProtKB/TrEMBL
  ENSSSCP00045013729.1 UniProtKB/TrEMBL
  ENSSSCP00050027891.1 UniProtKB/TrEMBL
  ENSSSCP00050027894.1 UniProtKB/TrEMBL
  ENSSSCP00055008094.1 UniProtKB/TrEMBL
  ENSSSCP00055008116.1 UniProtKB/TrEMBL
  ENSSSCP00065040574.1 UniProtKB/TrEMBL
  ENSSSCP00070029225.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012278.4 UniProtKB/TrEMBL
  ENSSSCT00015079445.1 UniProtKB/TrEMBL
  ENSSSCT00015079492.1 UniProtKB/TrEMBL
  ENSSSCT00025025588.1 UniProtKB/TrEMBL
  ENSSSCT00030017691.1 UniProtKB/TrEMBL
  ENSSSCT00030017704.1 UniProtKB/TrEMBL
  ENSSSCT00035052239.1 UniProtKB/TrEMBL
  ENSSSCT00035052244.1 UniProtKB/TrEMBL
  ENSSSCT00040093395.1 UniProtKB/TrEMBL
  ENSSSCT00040093512.1 UniProtKB/TrEMBL
  ENSSSCT00045019961.1 UniProtKB/TrEMBL
  ENSSSCT00045019985.1 UniProtKB/TrEMBL
  ENSSSCT00050064761.1 UniProtKB/TrEMBL
  ENSSSCT00050064764.1 UniProtKB/TrEMBL
  ENSSSCT00055010244.1 UniProtKB/TrEMBL
  ENSSSCT00055010273.1 UniProtKB/TrEMBL
  ENSSSCT00065092735.1 UniProtKB/TrEMBL
  ENSSSCT00070034979.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/TrEMBL
  NR_DBD_RAR UniProtKB/TrEMBL
  NR_LBD_RAR UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Retinoic_acid_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
NCBI Gene RARB ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/TrEMBL
  RETINOIC ACID RECEPTOR BETA UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PRINTS RETNOICACIDR UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF48508 UniProtKB/TrEMBL
UniProt A0A4X1ULE6_PIG UniProtKB/TrEMBL
  A0A8D0PK99_PIG UniProtKB/TrEMBL
  A0A8D1H591_PIG UniProtKB/TrEMBL
  A0A8D1HDW0_PIG UniProtKB/TrEMBL
  A0A8W4FEV2_PIG UniProtKB/TrEMBL
  Q9GKJ1_PIG UniProtKB/TrEMBL