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ONTOLOGY REPORT - ANNOTATIONS

Term:sno(s)RNA-containing ribonucleoprotein complex
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Accession:GO:0005732 term browser browse the term
Definition:A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family and associated proteins. Many are involved in a step of processing of rRNA molecules: cleavage, 2'-O-methylation, or pseudouridylation, but other RNA types can be targets as well. The majority fall into one of two classes, box C/D type or box H/ACA type, which are conserved across eukaryotes and archaea. Other members include the telomerase RNA and the ribonuclease MRP RNA.
Comment:Note that 'nucleolar' in the name acronym 'snoRNA' is part of the RNA family designation 'small nucleolar', and does not reflect the location of the complex. Both box C/D type and box H/ACA RNAs are found in Archaea (where they are referred to as sRNAs) as well as in Eukaryota. In eukaryotes, box H/ACA RNAs are found in both nucleolar-localized snoRNP complexes and in Cajal body-localized scaRNP complexes.
Synonyms:narrow_synonym: sRNP;   small nucleolar ribonucleoprotein;   small nucleolar ribonucleoprotein complex;   small ribonucleoprotein;   small ribonucleoprotein protein complex;   snoRNP


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sno(s)RNA-containing ribonucleoprotein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ins2 insulin 2 part_of IEA
ISO		 GO_REF:0000107
(PMID:12488434)		 Ensembl
RGD		 PMID:12488434 GO_REF:0000107 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484
Ensembl chr19:42,114,032...42,116,484 		JBrowse link
G Lsm6l1 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:42,114,013...42,116,559
Ensembl chr13:42,114,032...42,116,484 		JBrowse link
G Mphosph10 M-phase phosphoprotein 10 part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:117,948,134...117,964,149
Ensembl chr 1:117,948,134...117,964,149 		JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein part_of ISO
IBA
IEA
ISS		 (PMID:16601202), (PMID:17135485)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000024		 RGD
GO_Central
InterPro
UniProt		 PMID:16601202 PMID:17135485 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr16:22,837,583...22,868,320
Ensembl chr16:22,837,588...22,868,293 		JBrowse link
G Nop56 NOP56 ribonucleoprotein part_of ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 3:117,476,963...117,481,847
Ensembl chr 3:117,477,053...117,481,841 		JBrowse link
G Nop58 NOP58 ribonucleoprotein part_of ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 9:61,120,939...61,144,810
Ensembl chr 9:61,120,929...61,144,810 		JBrowse link
box C/D methylation guide snoRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbl fibrillarin part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932 		JBrowse link
G Fbll1 fibrillarin-like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299 		JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 IDA RGD PMID:10679015 RGD:633515 NCBI chr 1:244,921,275...244,932,089
Ensembl chr 1:244,921,377...244,932,088 		JBrowse link
G Nop56 NOP56 ribonucleoprotein part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:117,476,963...117,481,847
Ensembl chr 3:117,477,053...117,481,841 		JBrowse link
G Nop58 NOP58 ribonucleoprotein part_of ISO
IEA
IBA		 (PMID:33367824)
GO_REF:0000002
GO_REF:0000033		 RGD
InterPro
GO_Central		 PMID:33367824 GO_REF:0000002 GO_REF:0000033 NCBI chr 9:61,120,939...61,144,810
Ensembl chr 9:61,120,929...61,144,810 		JBrowse link
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein part_of ISO (PMID:9418896) RGD PMID:9418896 NCBI chr 8:107,116,411...107,126,123
Ensembl chr 8:107,117,471...107,126,123 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 part_of ISO
IBA		 (PMID:11081632)
GO_REF:0000033
(MGI:5882914|PMID:11842104)		 RGD
GO_Central		 PMID:11081632 PMID:11842104 GO_REF:0000033 MGI:5882914 NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872
Ensembl chr 1:113,565,295...113,570,872 		JBrowse link
G Snu13l1 small nuclear ribonucleoprotein 13 like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473 		JBrowse link
box H/ACA RNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snora62 small nucleolar RNA, H/ACA box 62 part_of ISO (PMID:10757788) RGD PMID:10757788 NCBI chr 8:119,853,958...119,854,106
Ensembl chr 8:119,853,958...119,854,106 		JBrowse link
G Snora74a small nucleolar RNA, H/ACA box 74A part_of ISO (PMID:10757788) RGD PMID:10757788 NCBI chr18:27,157,765...27,157,961
Ensembl chr18:27,157,765...27,157,961 		JBrowse link
box H/ACA snoRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:18082603)		 GO_Central
RGD		 PMID:18082603 PMID:10679015 PMID:12446766 GO_REF:0000033, RGD:633515, RGD:633420
G Gar1 GAR1 ribonucleoprotein part_of IDA
IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:10757788)		 GO_Central
Ensembl
RGD		 PMID:10757788 PMID:12446766 GO_REF:0000033 GO_REF:0000107, RGD:633420 NCBI chr 2:218,375,231...218,382,509
Ensembl chr 2:218,375,353...218,382,524 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:18082603)		 GO_Central
RGD		 PMID:18082603 PMID:12446766 GO_REF:0000033, RGD:633420 NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 IDA RGD PMID:10679015 RGD:633515 NCBI chr 1:244,921,275...244,932,089
Ensembl chr 1:244,921,377...244,932,088 		JBrowse link
G Nop10 NOP10 ribonucleoprotein part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:18082603)		 GO_Central
RGD		 PMID:18082603 PMID:12446766 GO_REF:0000033, RGD:633420 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
box H/ACA telomerase RNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 part_of ISO (PMID:18082603) RGD PMID:18082603
G Gar1 GAR1 ribonucleoprotein part_of ISO
IEA		 (PMID:10757788)
GO_REF:0000107		 RGD
Ensembl		 PMID:10757788 GO_REF:0000107 NCBI chr 2:218,375,231...218,382,509
Ensembl chr 2:218,375,353...218,382,524 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein part_of ISO (PMID:18082603) RGD PMID:18082603 NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop10 NOP10 ribonucleoprotein part_of ISO (PMID:18082603) RGD PMID:18082603 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
G Terc telomerase RNA component part_of ISO (PMID:10757788), (PMID:18082603) RGD PMID:10757788 PMID:18082603 NCBI chr 2:112,815,654...112,816,041 JBrowse link
ribonuclease MRP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pop1 POP1 homolog, ribonuclease P/MRP subunit part_of ISO
IBA		 (PMID:16723659), (PMID:8918471)
GO_REF:0000033		 RGD
GO_Central		 PMID:8918471 PMID:16723659 GO_REF:0000033 NCBI chr 7:65,705,348...65,733,143
Ensembl chr 7:65,705,368...65,733,141 		JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit part_of IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:90,960,026...90,968,360
Ensembl chr 1:90,960,022...90,968,443 		JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit part_of ISO
IBA		 (PMID:16723659)
GO_REF:0000033		 RGD
GO_Central		 PMID:16723659 GO_REF:0000033 NCBI chr12:41,376,755...41,384,882
Ensembl chr12:41,376,755...41,381,336 		JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit part_of ISO (PMID:16723659) RGD PMID:16723659 NCBI chr12:19,189,384...19,190,425
Ensembl chr12:19,189,138...19,190,674 		JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 part_of ISO
IBA		 (PMID:16723659)
GO_REF:0000033		 RGD
GO_Central		 PMID:16723659 GO_REF:0000033 NCBI chr 8:57,907,352...57,908,732
Ensembl chr 8:57,907,352...57,908,732 		JBrowse link
G Rpp25l ribonuclease P/MRP subunit p25 like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:56,878,420...56,879,956
Ensembl chr 5:56,876,316...56,880,013 		JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 part_of ISO (PMID:16723659) RGD PMID:16723659 NCBI chr 1:233,786,048...233,808,958
Ensembl chr 1:233,786,099...233,808,952 		JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:74,914,066...74,917,742
Ensembl chr17:74,908,932...74,927,431 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:28,947,752...28,956,788
Ensembl chr17:28,947,734...28,956,788 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20629
    protein-containing complex 6604
      ribonucleoprotein complex 1224
        sno(s)RNA-containing ribonucleoprotein complex 29
          box C/D RNP complex + 8
          box H/ACA RNP complex + 8
          ribonuclease MRP complex 9
paths to the root