Tspan8 (tetraspanin 8) - Rat Genome Database

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Gene: Tspan8 (tetraspanin 8) Rattus norvegicus
Analyze
Symbol: Tspan8
Name: tetraspanin 8
RGD ID: 621783
Description: Enables integrin binding activity. Involved in negative regulation of blood coagulation. Predicted to be located in cell surface. Predicted to be active in plasma membrane. Orthologous to human TSPAN8 (tetraspanin 8); INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CO-29; D6.1A; tetraspanin-8; Tm4sf3; transmembrane 4 superfamily member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8753,331,019 - 53,365,402 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl753,330,963 - 53,365,401 (+)EnsemblGRCr8
mRatBN7.2751,444,946 - 51,479,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl751,445,074 - 51,479,356 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx753,351,868 - 53,386,094 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0755,554,937 - 55,589,176 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0755,332,961 - 55,367,187 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0758,814,805 - 58,847,564 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl758,814,805 - 58,847,563 (+)Ensemblrn6Rnor6.0
Rnor_5.0758,821,787 - 58,854,525 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4755,104,257 - 55,136,906 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera748,232,246 - 48,265,180 (+)NCBICelera
RGSC_v3.1755,124,986 - 55,157,635 (+)NCBI
Cytogenetic Map7q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3-chloropropane-1,2-diol  (EXP)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diethyl maleate  (EXP)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
diuron  (EXP)
endosulfan  (EXP)
epoxiconazole  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
indole-3-methanol  (EXP)
inulin  (ISO)
irinotecan  (ISO)
itraconazole  (ISO)
ketoconazole  (ISO)
kojic acid  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
methapyrilene  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
pirinixic acid  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
streptozocin  (EXP)
sulindac sulfide  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
tributylstannane  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell surface  (IEA,ISO)
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Assessment of gene expression profiles in peripheral occlusive arterial disease. Bubenek S, etal., Can J Cardiol. 2012 Nov-Dec;28(6):712-20. doi: 10.1016/j.cjca.2012.03.013. Epub 2012 Jun 19.
2. Association between the rat homologue of CO-029, a metastasis-associated tetraspanin molecule and consumption coagulopathy. Claas C, etal., J Cell Biol 1998 Apr 6;141(1):267-80.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Cell surface tetraspanin Tspan8 contributes to molecular pathways of exosome-induced endothelial cell activation. Nazarenko I, etal., Cancer Res. 2010 Feb 15;70(4):1668-78. doi: 10.1158/0008-5472.CAN-09-2470. Epub 2010 Feb 2.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15725074   PMID:23533145   PMID:23683890   PMID:25544774   PMID:27733379   PMID:30982971   PMID:32013145   PMID:32687199   PMID:37572802  


Genomics

Comparative Map Data
Tspan8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8753,331,019 - 53,365,402 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl753,330,963 - 53,365,401 (+)EnsemblGRCr8
mRatBN7.2751,444,946 - 51,479,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl751,445,074 - 51,479,356 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx753,351,868 - 53,386,094 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0755,554,937 - 55,589,176 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0755,332,961 - 55,367,187 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0758,814,805 - 58,847,564 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl758,814,805 - 58,847,563 (+)Ensemblrn6Rnor6.0
Rnor_5.0758,821,787 - 58,854,525 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4755,104,257 - 55,136,906 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera748,232,246 - 48,265,180 (+)NCBICelera
RGSC_v3.1755,124,986 - 55,157,635 (+)NCBI
Cytogenetic Map7q22NCBI
TSPAN8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381271,125,096 - 71,157,999 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1271,124,454 - 71,441,898 (-)Ensemblhg38GRCh38
GRCh371271,518,876 - 71,551,779 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361269,805,144 - 69,838,046 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341269,805,143 - 69,838,046NCBI
Celera1271,182,199 - 71,215,102 (-)NCBICelera
Cytogenetic Map12q21.1NCBI
HuRef1268,568,317 - 68,601,483 (-)NCBIHuRef
CHM1_11271,488,354 - 71,521,249 (-)NCBICHM1_1
T2T-CHM13v2.01271,104,602 - 71,137,962 (-)NCBIT2T-CHM13v2.0
Tspan8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910115,652,722 - 115,685,798 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10115,652,737 - 115,685,798 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3810115,816,817 - 115,849,893 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10115,816,832 - 115,849,893 (+)Ensemblmm10GRCm38
MGSCv3710115,254,340 - 115,286,949 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610115,221,394 - 115,253,726 (+)NCBIMGSCv36mm8
Celera10117,748,806 - 117,782,287 (+)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1063.51NCBI
Tspan8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540511,199,280 - 11,232,955 (-)Ensembl
ChiLan1.0NW_00495540511,200,290 - 11,233,094 (-)NCBIChiLan1.0ChiLan1.0
TSPAN8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21079,158,701 - 79,407,526 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11279,155,101 - 79,403,926 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01268,653,209 - 68,686,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11271,417,577 - 71,450,873 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1271,417,577 - 71,450,873 (-)EnsemblpanPan2panpan1.1
TSPAN8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11012,786,824 - 12,818,257 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1012,786,867 - 12,818,088 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1012,725,247 - 12,756,661 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01012,919,135 - 12,950,691 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1012,919,178 - 12,950,562 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11012,784,319 - 12,816,660 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01013,031,549 - 13,062,936 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01013,155,666 - 13,187,030 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tspan8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494545,408,788 - 45,442,759 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936568285,696 - 311,864 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936568285,130 - 304,479 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl535,240,715 - 35,321,845 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1535,210,744 - 35,482,788 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2537,839,246 - 37,889,811 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11166,726,714 - 66,882,234 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1166,725,231 - 66,758,091 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037178,902,512 - 178,937,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475026,633,793 - 26,669,980 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475026,634,019 - 26,668,779 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tspan8
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11193,979,495 - 194,011,600 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tspan8
167 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:16
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000005909
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74913799967614020Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)74968283263890004Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74299622658678836Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
RH138974  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2751,475,580 - 51,475,735 (+)MAPPERmRatBN7.2
Rnor_6.0758,843,790 - 58,843,944NCBIRnor6.0
Rnor_5.0758,850,751 - 58,850,905UniSTSRnor5.0
RGSC_v3.4755,133,132 - 55,133,286UniSTSRGSC3.4
Celera748,261,507 - 48,261,661UniSTS
RH 3.4 Map7475.9UniSTS
Cytogenetic Map7q22UniSTS
RH141047  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2751,457,761 - 51,457,956 (+)MAPPERmRatBN7.2
Rnor_6.0758,827,386 - 58,827,580NCBIRnor6.0
Rnor_5.0758,834,368 - 58,834,562UniSTSRnor5.0
RGSC_v3.4755,116,904 - 55,117,098UniSTSRGSC3.4
Celera748,244,894 - 48,245,088UniSTS
RH 3.4 Map7476.01UniSTS
Cytogenetic Map7q22UniSTS
RH141354  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map7477.81UniSTS
Cytogenetic Map7q22UniSTS
BF417031  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2751,477,000 - 51,477,214 (+)MAPPERmRatBN7.2
Rnor_6.0758,845,208 - 58,845,421NCBIRnor6.0
Rnor_5.0758,852,169 - 58,852,382UniSTSRnor5.0
RGSC_v3.4755,134,550 - 55,134,763UniSTSRGSC3.4
Celera748,262,824 - 48,263,037UniSTS
RH 3.4 Map7477.51UniSTS
Cytogenetic Map7q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 79 59 6 343 179 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC061785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005909   ⟹   ENSRNOP00000005909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl753,330,963 - 53,365,401 (+)Ensembl
mRatBN7.2 Ensembl751,445,074 - 51,479,356 (+)Ensembl
Rnor_6.0 Ensembl758,814,805 - 58,847,563 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100493   ⟹   ENSRNOP00000077213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl751,445,074 - 51,473,855 (+)Ensembl
RefSeq Acc Id: NM_133526   ⟹   NP_598210
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8753,331,187 - 53,365,402 (+)NCBI
mRatBN7.2751,445,114 - 51,479,357 (+)NCBI
Rnor_6.0758,814,805 - 58,847,564 (+)NCBI
Rnor_5.0758,821,787 - 58,854,525 (+)NCBI
RGSC_v3.4755,104,257 - 55,136,906 (+)RGD
Celera748,232,246 - 48,265,180 (+)RGD
Sequence:
RefSeq Acc Id: XM_039078341   ⟹   XP_038934269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8753,331,019 - 53,365,402 (+)NCBI
mRatBN7.2751,444,946 - 51,479,360 (+)NCBI
RefSeq Acc Id: NP_598210   ⟸   NM_133526
- UniProtKB: O55158 (UniProtKB/TrEMBL),   A6IGL6 (UniProtKB/TrEMBL),   A0A8I5Y9E0 (UniProtKB/TrEMBL),   A6IGL8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005909   ⟸   ENSRNOT00000005909
RefSeq Acc Id: XP_038934269   ⟸   XM_039078341
- Peptide Label: isoform X1
- UniProtKB: O55158 (UniProtKB/TrEMBL),   A6IGL6 (UniProtKB/TrEMBL),   A0A8I5Y9E0 (UniProtKB/TrEMBL),   A6IGL8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077213   ⟸   ENSRNOT00000100493

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O55158-F1-model_v2 AlphaFold O55158 1-235 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695201
Promoter ID:EPDNEW_R5725
Type:initiation region
Name:Tspan8_1
Description:tetraspanin 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0758,814,911 - 58,814,971EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621783 AgrOrtholog
BioCyc Gene G2FUF-34056 BioCyc
Ensembl Genes ENSRNOG00000004411 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005909 ENTREZGENE
  ENSRNOT00000005909.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5623788 IMAGE-MGC_LOAD
InterPro Tetraspanin UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/TrEMBL
  Tetraspanin_EC2 UniProtKB/TrEMBL
  Tetraspanin_sub UniProtKB/TrEMBL
KEGG Report rno:171048 UniProtKB/TrEMBL
MGC_CLONE MGC:72317 IMAGE-MGC_LOAD
NCBI Gene 171048 ENTREZGENE
PANTHER PTHR19282 UniProtKB/TrEMBL
  TETRASPANIN-8 UniProtKB/TrEMBL
Pfam Tetraspannin UniProtKB/TrEMBL
PhenoGen Tspan8 PhenoGen
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
PROSITE TM4_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004411 RatGTEx
Superfamily-SCOP Tetraspanin UniProtKB/TrEMBL
UniProt A0A8I5Y9E0 ENTREZGENE
  A6IGL6 ENTREZGENE
  A6IGL8 ENTREZGENE, UniProtKB/TrEMBL
  O55158 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6IGL6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Tspan8  tetraspanin 8      Symbol and Name updated 1299863 APPROVED
2004-02-26 Tm4sf3  transmembrane 4 superfamily member 3      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Tm4sf3  transmembrane 4 superfamily member 3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction interacts with beta1, alpha3, and alpha6-beta1 integrins 634231
gene_protein 235 amino acids 634231