Tspan8 (tetraspanin 8) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tspan8 (tetraspanin 8) Mus musculus
Analyze
Symbol: Tspan8
Name: tetraspanin 8
RGD ID: 1552118
MGI Page MGI
Description: Predicted to enable integrin binding activity. Acts upstream of or within regulation of gene expression and spermatogenesis. Located in cell surface. Orthologous to human TSPAN8 (tetraspanin 8).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C76990; E330007O21Rik; MGC38363; tetraspanin-8; Tm4sf; Tm4sf3; transmembrane 4 superfamily member 3; tspan-8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910115,652,722 - 115,685,798 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10115,652,737 - 115,685,798 (+)EnsemblGRCm39 Ensembl
GRCm3810115,816,817 - 115,849,893 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10115,816,832 - 115,849,893 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710115,254,340 - 115,286,949 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610115,221,394 - 115,253,726 (+)NCBIMGSCv36mm8
Celera10117,748,806 - 117,782,287 (+)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1063.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3-chloropropane-1,2-diol  (ISO)
3-methylcholanthrene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
Benzo[k]fluoranthene  (EXP)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
CGP 52608  (ISO)
chlordecone  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diclofenac  (EXP)
dicrotophos  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (EXP)
diuron  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
folic acid  (EXP)
fulvestrant  (ISO)
furan  (ISO)
gentamycin  (ISO)
indole-3-methanol  (ISO)
inulin  (EXP)
irinotecan  (ISO)
itraconazole  (EXP)
ketoconazole  (EXP)
kojic acid  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
methapyrilene  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
pirinixic acid  (EXP)
progesterone  (EXP)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
Soman  (ISO)
streptozocin  (ISO)
sulindac sulfide  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP)
testosterone  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
tributylstannane  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Assessment of gene expression profiles in peripheral occlusive arterial disease. Bubenek S, etal., Can J Cardiol. 2012 Nov-Dec;28(6):712-20. doi: 10.1016/j.cjca.2012.03.013. Epub 2012 Jun 19.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Identification of FGF10 targets in the embryonic lung epithelium during bud morphogenesis. Lu J, etal., J Biol Chem 2005 Feb 11;280(6):4834-41. Epub 2004 Nov 19.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11752298   PMID:12477932   PMID:14660441   PMID:16141072   PMID:16141073   PMID:16452166   PMID:16602821  
PMID:18291621   PMID:20531244   PMID:20733586   PMID:21873635   PMID:27733379   PMID:28777493   PMID:30523786   PMID:30728831   PMID:32195353   PMID:37204469  


Genomics

Comparative Map Data
Tspan8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910115,652,722 - 115,685,798 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10115,652,737 - 115,685,798 (+)EnsemblGRCm39 Ensembl
GRCm3810115,816,817 - 115,849,893 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10115,816,832 - 115,849,893 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710115,254,340 - 115,286,949 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610115,221,394 - 115,253,726 (+)NCBIMGSCv36mm8
Celera10117,748,806 - 117,782,287 (+)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1063.51NCBI
TSPAN8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381271,125,096 - 71,157,999 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1271,125,085 - 71,441,898 (-)EnsemblGRCh38hg38GRCh38
GRCh371271,518,876 - 71,551,779 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361269,805,144 - 69,838,046 (-)NCBINCBI36Build 36hg18NCBI36
Build 341269,805,143 - 69,838,046NCBI
Celera1271,182,199 - 71,215,102 (-)NCBICelera
Cytogenetic Map12q21.1NCBI
HuRef1268,568,317 - 68,601,483 (-)NCBIHuRef
CHM1_11271,488,354 - 71,521,249 (-)NCBICHM1_1
T2T-CHM13v2.01271,104,602 - 71,137,962 (-)NCBIT2T-CHM13v2.0
Tspan8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8753,331,019 - 53,365,402 (+)NCBIGRCr8
mRatBN7.2751,444,946 - 51,479,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl751,445,074 - 51,479,356 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx753,351,868 - 53,386,094 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0755,554,937 - 55,589,176 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0755,332,961 - 55,367,187 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0758,814,805 - 58,847,564 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl758,814,805 - 58,847,563 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0758,821,787 - 58,854,525 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4755,104,257 - 55,136,906 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1755,124,986 - 55,157,635 (+)NCBI
Celera748,232,246 - 48,265,180 (+)NCBICelera
Cytogenetic Map7q22NCBI
Tspan8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540511,199,280 - 11,232,955 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540511,200,290 - 11,233,094 (-)NCBIChiLan1.0ChiLan1.0
TSPAN8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21079,158,701 - 79,407,526 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11279,155,101 - 79,403,926 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01268,653,209 - 68,686,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11271,417,577 - 71,450,873 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1271,417,577 - 71,450,873 (-)Ensemblpanpan1.1panPan2
TSPAN8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11012,786,824 - 12,818,257 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1012,786,867 - 12,818,088 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1012,725,247 - 12,756,661 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01012,919,135 - 12,950,691 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1012,919,178 - 12,950,562 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11012,784,319 - 12,816,660 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01013,031,549 - 13,062,936 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01013,155,666 - 13,187,030 (-)NCBIUU_Cfam_GSD_1.0
Tspan8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494545,408,788 - 45,442,759 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936568285,696 - 311,864 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936568285,130 - 304,479 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl535,240,715 - 35,321,845 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1535,210,744 - 35,482,788 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2537,839,246 - 37,889,811 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11166,726,714 - 66,882,234 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1166,725,231 - 66,758,091 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037178,902,512 - 178,937,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475026,633,793 - 26,669,980 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475026,634,019 - 26,668,779 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tspan8
1171 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:300
Count of miRNA genes:85
Interacting mature miRNAs:97
Transcripts:ENSMUST00000035563, ENSMUST00000080630, ENSMUST00000179196
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
11353822Insq12_minsulin QTL 12 (mouse)10110453347125515907Mouse
26884391Skwq11_mskull length QTL 11, 16 week (mouse)10113535905121635905Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
11059544Lmr32_mleishmaniasis resistance 32 (mouse)1099309418116220862Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
27226722Tibw7_mtibia width 7, proximal, 16 week (mouse)10108635861125435869Mouse
13506931Recrq11_mrecombination rate in male meiosis QTL 11 (mouse)10114335905123635905Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102735861123235905Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
26884433Zlq2_mzygomatic length QTL 2, 5 week (mouse)10113535905125735869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
11059552Lmr32c_mleishmaniasis resistance 32c (mouse)1099309418116220862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
27095902Scvln11_msacral vertebrae length 2, 10 week (mouse)10110035861125435869Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
11353823Homaq2_mhomeostatic model assessment QTL 2 (mouse)10110453347125515907Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
26884383Bzwq3_mbi-zygomatic width QTL 3, 5 week (mouse)10114235905122735905Mouse
26884377Skwq3_mskull length QTL 3, 5 week (mouse)10114635905122735905Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
10412078Hylaq3_mHyperlocomotor activity related QTL 3 (mouse)Not determined10111568226117986649Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105088254118497353Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse

Markers in Region
RH126076  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810115,849,653 - 115,849,851UniSTSGRCm38
MGSCv3710115,286,709 - 115,286,907UniSTSGRCm37
Celera10117,782,050 - 117,782,245UniSTS
Cytogenetic Map10D2UniSTS
Whitehead/MRC_RH101220.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001168679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV060937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV065030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000035563   ⟹   ENSMUSP00000049243
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10115,653,189 - 115,685,520 (+)Ensembl
GRCm38.p6 Ensembl10115,817,284 - 115,849,615 (+)Ensembl
RefSeq Acc Id: ENSMUST00000080630   ⟹   ENSMUSP00000079463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10115,653,176 - 115,685,525 (+)Ensembl
GRCm38.p6 Ensembl10115,817,271 - 115,849,620 (+)Ensembl
RefSeq Acc Id: ENSMUST00000179196   ⟹   ENSMUSP00000136645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10115,653,188 - 115,685,798 (+)Ensembl
GRCm38.p6 Ensembl10115,817,283 - 115,849,893 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217900   ⟹   ENSMUSP00000151525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10115,652,737 - 115,669,217 (+)Ensembl
GRCm38.p6 Ensembl10115,816,832 - 115,833,312 (+)Ensembl
RefSeq Acc Id: NM_001168679   ⟹   NP_001162150
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910115,653,189 - 115,685,798 (+)NCBI
GRCm3810115,817,284 - 115,849,893 (+)NCBI
MGSCv3710115,254,340 - 115,286,949 (+)RGD
Celera10117,748,806 - 117,782,287 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168680   ⟹   NP_001162151
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910115,653,189 - 115,685,798 (+)NCBI
GRCm3810115,817,284 - 115,849,893 (+)NCBI
MGSCv3710115,254,340 - 115,286,949 (+)RGD
Celera10117,748,806 - 117,782,287 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_146010   ⟹   NP_666122
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910115,653,189 - 115,685,798 (+)NCBI
GRCm3810115,817,284 - 115,849,893 (+)NCBI
MGSCv3710115,254,340 - 115,286,949 (+)RGD
Celera10117,748,806 - 117,782,287 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513542   ⟹   XP_006513605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910115,652,722 - 115,685,528 (+)NCBI
GRCm3810115,816,817 - 115,849,623 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513543   ⟹   XP_006513606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910115,653,072 - 115,685,528 (+)NCBI
GRCm3810115,817,161 - 115,849,623 (+)NCBI
Sequence:
RefSeq Acc Id: NP_666122   ⟸   NM_146010
- UniProtKB: Q8R3G9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001162150   ⟸   NM_001168679
- UniProtKB: Q8R3G9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001162151   ⟸   NM_001168680
- UniProtKB: Q8R3G9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513605   ⟸   XM_006513542
- Peptide Label: isoform X1
- UniProtKB: Q8R3G9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513606   ⟸   XM_006513543
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000151525   ⟸   ENSMUST00000217900
RefSeq Acc Id: ENSMUSP00000136645   ⟸   ENSMUST00000179196
RefSeq Acc Id: ENSMUSP00000079463   ⟸   ENSMUST00000080630
RefSeq Acc Id: ENSMUSP00000049243   ⟸   ENSMUST00000035563

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R3G9-F1-model_v2 AlphaFold Q8R3G9 1-235 view protein structure

Promoters
RGD ID:8673302
Promoter ID:EPDNEW_M14671
Type:initiation region
Name:Tspan8_2
Description:Mus musculus tetraspanin 8 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14672  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810115,817,303 - 115,817,363EPDNEW
RGD ID:8673282
Promoter ID:EPDNEW_M14672
Type:initiation region
Name:Tspan8_1
Description:Mus musculus tetraspanin 8 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14671  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810115,817,470 - 115,817,530EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384918 AgrOrtholog
Ensembl Genes ENSMUSG00000034127 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035563 ENTREZGENE
  ENSMUST00000035563.15 UniProtKB/Swiss-Prot
  ENSMUST00000080630 ENTREZGENE
  ENSMUST00000080630.11 UniProtKB/Swiss-Prot
  ENSMUST00000179196 ENTREZGENE
  ENSMUST00000179196.3 UniProtKB/Swiss-Prot
  ENSMUST00000217900.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/Swiss-Prot
InterPro Tetraspanin UniProtKB/Swiss-Prot
  Tetraspanin/Peripherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/Swiss-Prot
  Tetraspanin_EC2_sf UniProtKB/Swiss-Prot
KEGG Report mmu:216350 UniProtKB/Swiss-Prot
MGD MGI:2384918 ENTREZGENE
NCBI Gene 216350 ENTREZGENE
PANTHER PTHR19282 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TETRASPANIN-8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tetraspanin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tspan8 PhenoGen
PIRSF Tetraspanin UniProtKB/Swiss-Prot
PRINTS TMFOUR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TM4_1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48652 UniProtKB/Swiss-Prot
UniProt A0A1W2P749_MOUSE UniProtKB/TrEMBL
  Q8R3G9 ENTREZGENE, UniProtKB/Swiss-Prot