Acad9 (acyl-CoA dehydrogenase family, member 9) - Rat Genome Database

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Gene: Acad9 (acyl-CoA dehydrogenase family, member 9) Rattus norvegicus
Analyze
Symbol: Acad9
Name: acyl-CoA dehydrogenase family, member 9
RGD ID: 727973
Description: Predicted to enable long-chain fatty acyl-CoA dehydrogenase activity and medium-chain fatty acyl-CoA dehydrogenase activity. Predicted to be involved in long-chain fatty acid metabolic process; medium-chain fatty acid metabolic process; and mitochondrial respiratory chain complex I assembly. Predicted to be located in dendrite; mitochondrial membrane; and nucleus. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 20. Orthologous to human ACAD9 (acyl-CoA dehydrogenase family member 9); PARTICIPATES IN fatty acid beta degradation pathway; INTERACTS WITH (+)-schisandrin B; 2,2',5,5'-tetrachlorobiphenyl; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ACAD-9; acyl-CoA dehydrogenase family member 9, mitochondrial; acyl-Coenzyme A dehydrogenase family, member 9; complex I assembly factor ACAD9, mitochondrial; Nyggf2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82120,871,329 - 120,894,306 (+)NCBIGRCr8
mRatBN7.22118,943,170 - 118,966,150 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2118,943,174 - 118,966,547 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2125,496,076 - 125,519,023 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02123,608,759 - 123,631,706 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02118,237,531 - 118,260,478 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02122,782,051 - 122,806,166 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2122,782,060 - 122,805,768 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,407,910 - 142,432,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42122,562,974 - 122,585,953 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12122,528,005 - 122,531,312 (+)NCBI
Celera2113,903,986 - 113,926,961 (+)NCBICelera
Cytogenetic Map2q25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-trinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP)
amiodarone  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-carotene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
diuron  (EXP)
doxorubicin  (ISO)
epoxiconazole  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glafenine  (EXP)
hydralazine  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
leflunomide  (EXP)
methapyrilene  (EXP,ISO)
methimazole  (EXP)
oleic acid  (ISO)
oxybenzone  (EXP)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
phlorizin  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulindac  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (EXP,ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Acyl-CoA dehydrogenases. A mechanistic overview. Ghisla S and Thorpe C, Eur J Biochem. 2004 Feb;271(3):494-508.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:14651853   PMID:16020546   PMID:18385088   PMID:18614015   PMID:20816094   PMID:21237683   PMID:28084602  


Genomics

Comparative Map Data
Acad9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82120,871,329 - 120,894,306 (+)NCBIGRCr8
mRatBN7.22118,943,170 - 118,966,150 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2118,943,174 - 118,966,547 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2125,496,076 - 125,519,023 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02123,608,759 - 123,631,706 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02118,237,531 - 118,260,478 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02122,782,051 - 122,806,166 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2122,782,060 - 122,805,768 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,407,910 - 142,432,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42122,562,974 - 122,585,953 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12122,528,005 - 122,531,312 (+)NCBI
Celera2113,903,986 - 113,926,961 (+)NCBICelera
Cytogenetic Map2q25NCBI
ACAD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383128,879,620 - 128,913,114 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3128,879,596 - 128,924,003 (+)EnsemblGRCh38hg38GRCh38
GRCh373128,598,463 - 128,631,957 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,081,144 - 130,114,647 (+)NCBINCBI36Build 36hg18NCBI36
Build 343130,081,151 - 130,114,654NCBI
Celera3127,030,566 - 127,064,360 (+)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3125,985,335 - 126,019,201 (+)NCBIHuRef
CHM1_13128,561,563 - 128,595,180 (+)NCBICHM1_1
T2T-CHM13v2.03131,624,340 - 131,657,836 (+)NCBIT2T-CHM13v2.0
Acad9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,120,128 - 36,147,006 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl336,120,128 - 36,147,002 (+)EnsemblGRCm39 Ensembl
GRCm38336,065,979 - 36,092,857 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,065,979 - 36,092,853 (+)EnsemblGRCm38mm10GRCm38
MGSCv37335,964,922 - 35,991,779 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36336,257,613 - 36,284,394 (+)NCBIMGSCv36mm8
Celera335,948,569 - 35,975,311 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.41NCBI
Acad9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545010,576,615 - 10,603,779 (-)NCBIChiLan1.0ChiLan1.0
ACAD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22126,813,609 - 126,847,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13126,818,332 - 126,854,947 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03125,941,278 - 125,974,847 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,298,753 - 133,331,883 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,298,753 - 133,331,883 (+)Ensemblpanpan1.1panPan2
ACAD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1203,155,754 - 3,205,307 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl203,021,167 - 3,205,279 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha203,195,168 - 3,244,737 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0203,177,085 - 3,226,674 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl203,177,088 - 3,226,691 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1202,918,262 - 2,945,974 (-)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.1202,896,688 - 2,903,181 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0203,218,821 - 3,268,252 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0203,183,441 - 3,233,049 (-)NCBIUU_Cfam_GSD_1.0
Acad9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,042,088 - 20,064,512 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493679890,584 - 106,041 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493679883,952 - 106,381 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACAD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,374,944 - 71,427,126 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,374,926 - 71,422,431 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,004,147 - 79,018,705 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACAD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,143,869 - 52,166,123 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2252,144,454 - 52,169,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041114,184,550 - 114,221,588 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acad9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247817,683,025 - 7,717,427 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Acad9
125 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:54
Interacting mature miRNAs:56
Transcripts:ENSRNOT00000019108
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)238573329122609194Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527143657569Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2118111229149559726Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1354594Despr10Despair related QTL 102e-06locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)228484589169504100Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)228484589169504100Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat

Markers in Region
RH136888  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22118,965,805 - 118,965,993 (+)MAPPERmRatBN7.2
Rnor_6.02122,805,421 - 122,805,608NCBIRnor6.0
Rnor_5.02142,431,280 - 142,431,467UniSTSRnor5.0
RGSC_v3.42122,585,609 - 122,585,796UniSTSRGSC3.4
Celera2113,926,617 - 113,926,804UniSTS
RH 3.4 Map2679.2UniSTS
Cytogenetic Map2q25UniSTS
AI178764  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22118,966,360 - 118,966,512 (+)MAPPERmRatBN7.2
Rnor_6.02122,805,976 - 122,806,127NCBIRnor6.0
Rnor_5.02142,431,835 - 142,431,986UniSTSRnor5.0
RGSC_v3.42122,586,164 - 122,586,315UniSTSRGSC3.4
Celera2113,927,172 - 113,927,323UniSTS
RH 3.4 Map2676.8UniSTS
Cytogenetic Map2q25UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000019108   ⟹   ENSRNOP00000019108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2118,943,174 - 118,966,547 (+)Ensembl
Rnor_6.0 Ensembl2122,782,060 - 122,805,768 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089353   ⟹   ENSRNOP00000070329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2118,943,174 - 118,966,547 (+)Ensembl
Rnor_6.0 Ensembl2122,782,131 - 122,805,764 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113867   ⟹   ENSRNOP00000093068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2118,943,193 - 118,965,757 (+)Ensembl
RefSeq Acc Id: NM_181768   ⟹   NP_861433
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82120,871,329 - 120,894,306 (+)NCBI
mRatBN7.22118,943,170 - 118,966,150 (+)NCBI
Rnor_6.02122,782,131 - 122,805,765 (+)NCBI
Rnor_5.02142,407,910 - 142,432,025 (+)NCBI
RGSC_v3.42122,562,974 - 122,585,953 (+)RGD
Celera2113,903,986 - 113,926,961 (+)RGD
Sequence:
RefSeq Acc Id: NP_861433   ⟸   NM_181768
- UniProtKB: B1WC61 (UniProtKB/TrEMBL),   A6IHW4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070329   ⟸   ENSRNOT00000089353
Ensembl Acc Id: ENSRNOP00000019108   ⟸   ENSRNOT00000019108
Ensembl Acc Id: ENSRNOP00000093068   ⟸   ENSRNOT00000113867
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC61-F1-model_v2 AlphaFold B1WC61 1-625 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691288
Promoter ID:EPDNEW_R1813
Type:initiation region
Name:Acad9_1
Description:acyl-CoA dehydrogenase family, member 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02122,782,139 - 122,782,199EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727973 AgrOrtholog
BioCyc Gene G2FUF-53325 BioCyc
Ensembl Genes ENSRNOG00000014178 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019108.6 UniProtKB/TrEMBL
  ENSRNOT00000089353.2 UniProtKB/Swiss-Prot
  ENSRNOT00000113867.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Butyryl-CoA Dehydrogenase, subunit A, domain 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9092768 IMAGE-MGC_LOAD
InterPro ACAD9/ACADV-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_DH_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AcylCo_DH-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AcylCoA_DH/ox_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:294973 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187892 IMAGE-MGC_LOAD
NCBI Gene 294973 ENTREZGENE
PANTHER ACYL-COA DEHYDROGENASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COMPLEX I ASSEMBLY FACTOR ACAD9, MITOCHONDRIAL-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ACAD9-ACADV_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_dh_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_dh_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Acad9 PhenoGen
PROSITE ACYL_COA_DH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACYL_COA_DH_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014178 RatGTEx
Superfamily-SCOP SSF47203 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56645 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AHW9_RAT UniProtKB/TrEMBL
  A0A8L2Q9T5_RAT UniProtKB/TrEMBL
  A6IHW3_RAT UniProtKB/TrEMBL
  A6IHW4 ENTREZGENE, UniProtKB/TrEMBL
  A6IHW5_RAT UniProtKB/TrEMBL
  A6IHW6_RAT UniProtKB/TrEMBL
  A6IHW7_RAT UniProtKB/TrEMBL
  A6IHW8_RAT UniProtKB/TrEMBL
  ACAD9_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-28 Acad9  acyl-CoA dehydrogenase family, member 9  Acad9  acyl-Coenzyme A dehydrogenase family, member 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Acad9  acyl-Coenzyme A dehydrogenase family, member 9  Nyggf2  Nyggf2 protein  Symbol and Name updated 1299863 APPROVED