Odf1 (outer dense fiber of sperm tails 1) - Rat Genome Database

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Gene: Odf1 (outer dense fiber of sperm tails 1) Rattus norvegicus
Analyze
Symbol: Odf1
Name: outer dense fiber of sperm tails 1
RGD ID: 3228
Description: Enables protein domain specific binding activity. Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in manchette and sperm flagellum. Predicted to be active in outer dense fiber. Orthologous to human ODF1 (outer dense fiber of sperm tails 1); INTERACTS WITH ammonium chloride; bisphenol A; fenvalerate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: outer dense fiber protein 1; RTS 5/1; Sperm outer dense fiber major protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8771,262,270 - 71,274,621 (+)NCBIGRCr8
mRatBN7.2769,377,427 - 69,389,662 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl769,380,116 - 69,389,664 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx771,256,626 - 71,264,361 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0773,459,160 - 73,466,895 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0773,327,184 - 73,334,919 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0777,066,580 - 77,074,712 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl777,066,955 - 77,074,711 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0777,172,716 - 77,180,530 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4773,736,778 - 73,744,536 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1773,757,489 - 73,765,265 (+)NCBI
Celera766,445,193 - 66,452,953 (+)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Sequence and developmental expression of a mRNA encoding a putative protein of rat sperm outer dense fibers. Burfeind P and Hoyer-Fender S, Dev Biol 1991 Nov;148(1):195-204.
2. Structure and chromosomal assignment of a gene encoding the major protein of rat sperm outer dense fibres. Burfeind P, etal., Eur J Biochem 1993 Sep 1;216(2):497-505.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Identity of two rat testis cDNAs. Hoyer-Fender S Dev Biol 1993 Jun;157(2):553.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Molecular cloning and developmental expression of an mRNA encoding the 27 kDa outer dense fiber protein of rat spermatozoa. Morales CR, etal., Mol Reprod Dev 1994 Feb;37(2):229-40.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. A new rat gene RT7 is specifically expressed during spermatogenesis. van der Hoorn FA, etal., Dev Biol 1990 Nov;142(1):147-54.
12. Novel RING finger protein OIP1 binds to conserved amino acid repeats in sperm tail protein ODF1. Zarsky HA, etal., Biol Reprod 2003 Feb;68(2):543-52.
Additional References at PubMed
PMID:10373309   PMID:12079992   PMID:12477932   PMID:12594206   PMID:15489334   PMID:21630459  


Genomics

Comparative Map Data
Odf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8771,262,270 - 71,274,621 (+)NCBIGRCr8
mRatBN7.2769,377,427 - 69,389,662 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl769,380,116 - 69,389,664 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx771,256,626 - 71,264,361 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0773,459,160 - 73,466,895 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0773,327,184 - 73,334,919 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0777,066,580 - 77,074,712 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl777,066,955 - 77,074,711 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0777,172,716 - 77,180,530 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4773,736,778 - 73,744,536 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1773,757,489 - 73,765,265 (+)NCBI
Celera766,445,193 - 66,452,953 (+)NCBICelera
Cytogenetic Map7q22NCBI
ODF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388102,551,589 - 102,561,018 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8102,551,589 - 102,561,018 (+)EnsemblGRCh38hg38GRCh38
GRCh378103,563,817 - 103,573,246 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368103,633,036 - 103,642,422 (+)NCBINCBI36Build 36hg18NCBI36
Build 348103,633,035 - 103,642,422NCBI
Celera899,751,133 - 99,760,516 (+)NCBICelera
Cytogenetic Map8q22.3NCBI
HuRef898,764,996 - 98,774,369 (+)NCBIHuRef
CHM1_18103,604,099 - 103,613,495 (+)NCBICHM1_1
T2T-CHM13v2.08103,679,879 - 103,689,278 (+)NCBIT2T-CHM13v2.0
Odf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391538,219,447 - 38,226,979 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1538,219,447 - 38,226,979 (+)EnsemblGRCm39 Ensembl
GRCm381538,219,203 - 38,226,735 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1538,219,203 - 38,226,735 (+)EnsemblGRCm38mm10GRCm38
MGSCv371538,148,958 - 38,156,490 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361538,163,790 - 38,171,228 (+)NCBIMGSCv36mm8
Celera1538,838,532 - 38,846,058 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1515.14NCBI
Odf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541727,145,542 - 27,150,969 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541727,145,542 - 27,150,910 (+)NCBIChiLan1.0ChiLan1.0
ODF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27119,890,792 - 119,926,164 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1895,426,778 - 95,462,119 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0899,206,018 - 99,216,111 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18101,366,611 - 101,376,030 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8101,366,611 - 101,376,030 (+)Ensemblpanpan1.1panPan2
ODF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,137,119 - 4,146,557 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,137,257 - 4,146,555 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha134,138,615 - 4,148,054 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0134,297,181 - 4,306,620 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl134,297,316 - 4,306,618 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1134,139,667 - 4,149,104 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0134,252,465 - 4,261,899 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0134,269,671 - 4,279,142 (+)NCBIUU_Cfam_GSD_1.0
Odf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530333,642,933 - 33,651,953 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647041,069,033 - 41,078,020 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647041,069,033 - 41,078,020 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ODF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl434,511,077 - 34,520,609 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1434,511,077 - 34,520,601 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2437,337,182 - 37,346,705 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103237240
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1897,394,506 - 97,403,601 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl897,394,673 - 97,403,464 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603943,242,358 - 43,252,510 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Odf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476319,555,101 - 19,560,333 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476319,554,944 - 19,560,473 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Odf1
42 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:81
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000008700
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat

Markers in Region
ODF1__6103  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2769,389,123 - 69,389,657 (+)MAPPERmRatBN7.2
Rnor_6.0777,074,174 - 77,074,707NCBIRnor6.0
Rnor_5.0777,179,992 - 77,180,525UniSTSRnor5.0
RGSC_v3.4773,743,998 - 73,744,531UniSTSRGSC3.4
Celera766,452,415 - 66,452,948UniSTS
Cytogenetic Map7q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 7
Medium 1
Low 1 2 9 5 6 5 3 5 7 1 7 3 3
Below cutoff 2 16 8 8 8 3 4 31 2 13 3 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000008700   ⟹   ENSRNOP00000008700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl769,380,116 - 69,389,664 (+)Ensembl
Rnor_6.0 Ensembl777,066,955 - 77,074,711 (+)Ensembl
RefSeq Acc Id: NM_024126   ⟹   NP_077040
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,266,864 - 71,274,621 (+)NCBI
mRatBN7.2769,381,903 - 69,389,662 (+)NCBI
Rnor_6.0777,066,955 - 77,074,712 (+)NCBI
Rnor_5.0777,172,716 - 77,180,530 (+)NCBI
RGSC_v3.4773,736,778 - 73,744,536 (+)RGD
Celera766,445,193 - 66,452,953 (+)RGD
Sequence:
RefSeq Acc Id: XM_017594659   ⟹   XP_017450148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,266,449 - 71,274,621 (+)NCBI
mRatBN7.2769,381,884 - 69,389,662 (+)NCBI
Rnor_6.0777,066,580 - 77,074,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039078408   ⟹   XP_038934336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,262,270 - 71,274,621 (+)NCBI
mRatBN7.2769,377,427 - 69,389,662 (+)NCBI
RefSeq Acc Id: XM_063262993   ⟹   XP_063119063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,268,334 - 71,274,621 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_077040   ⟸   NM_024126
- UniProtKB: Q63534 (UniProtKB/Swiss-Prot),   Q63390 (UniProtKB/Swiss-Prot),   Q62652 (UniProtKB/Swiss-Prot),   Q63535 (UniProtKB/Swiss-Prot),   P21769 (UniProtKB/Swiss-Prot),   A6HR54 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450148   ⟸   XM_017594659
- Peptide Label: isoform X1
- UniProtKB: A0A8L2UI24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000008700   ⟸   ENSRNOT00000008700
RefSeq Acc Id: XP_038934336   ⟸   XM_039078408
- Peptide Label: isoform X3
- UniProtKB: A6HR53 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119063   ⟸   XM_063262993
- Peptide Label: isoform X2
Protein Domains
sHSP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P21769-F1-model_v2 AlphaFold P21769 1-245 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695300
Promoter ID:EPDNEW_R5825
Type:initiation region
Name:Odf1_1
Description:outer dense fiber of sperm tails 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0777,066,938 - 77,066,998EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3228 AgrOrtholog
BioCyc Gene G2FUF-33594 BioCyc
Ensembl Genes ENSRNOG00000006578 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008700.6 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.790 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7114007 IMAGE-MGC_LOAD
InterPro A-crystallin/Hsp20_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ODF1_ACD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ODFP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24610 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93123 IMAGE-MGC_LOAD
NCBI Gene 24610 ENTREZGENE
PANTHER OUTER DENSE FIBER PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR17125 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HSP20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Odf1 PhenoGen
RatGTEx ENSRNOG00000006578 RatGTEx
Superfamily-SCOP SSF49764 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2UI24 ENTREZGENE, UniProtKB/TrEMBL
  A6HR53 ENTREZGENE, UniProtKB/TrEMBL
  A6HR54 ENTREZGENE, UniProtKB/TrEMBL
  ODFP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q62652 ENTREZGENE
  Q63390 ENTREZGENE
  Q63534 ENTREZGENE
  Q63535 ENTREZGENE
UniProt Secondary Q62652 UniProtKB/Swiss-Prot
  Q63390 UniProtKB/Swiss-Prot
  Q63534 UniProtKB/Swiss-Prot
  Q63535 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2001-07-23 Odf1  outer dense fiber of sperm tails 1      Name updated to reflect Human and Mouse nomenclature 67952 APPROVED
2001-07-23 Odf1  Sperm outer dense fiber major protein 1      Name withdrawn 67952 WITHDRAWN

RGD Curation Notes
Note Type Note Reference
gene_protein 244 amino acids 729331