Gene Ontology Annotations Click to see Annotation Detail View
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Gene Ontology Annotations Click to see Annotation Detail View
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| # | Reference Title | Reference Citation |
| 1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | The genomic sequence and comparative analysis of the rat major histocompatibility complex. | Hurt P, etal., Genome Res 2004 Apr;14(4):631-9. |
| 3. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
| 4. | GOA pipeline | RGD automated data pipeline |
| 5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
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Variants in RT1-N2
84 total Variants
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| The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
| RH127521 |
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| RH140239 |
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adipose tissue
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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| 10 | 8 | 2 | 140 | 207 | 67 | 66 | 56 | 103 | 50 | 22 | 375 | 275 | 11 | 194 | 52 | 83 | 16 | 17 | 17 |
| RefSeq Transcripts | NM_001008854 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006255938 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017601670 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017601671 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017601672 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039098781 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039098782 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039098783 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039098784 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039098785 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_063279192 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_063279193 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_010060712 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | BX883048 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| CH474118 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| JAXUCZ010000020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| L23127 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| M74822 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| Ensembl Acc Id: | ENSRNOT00000050159 ⟹ ENSRNOP00000049883 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000084770 ⟹ ENSRNOP00000074505 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000086026 ⟹ ENSRNOP00000075415 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000120544 ⟹ ENSRNOP00000098186 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001008854 ⟹ NP_001008854 | ||||||||||||||||||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_006255938 ⟹ XP_006256000 | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_017601671 ⟹ XP_017457160 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_039098781 ⟹ XP_038954709 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039098782 ⟹ XP_038954710 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039098783 ⟹ XP_038954711 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039098784 ⟹ XP_038954712 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039098785 ⟹ XP_038954713 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_063279192 ⟹ XP_063135262 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_063279193 ⟹ XP_063135263 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XR_010060712 | ||||||||
| Type: | NON-CODING | ||||||||
| Position: |
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| Protein RefSeqs | NP_001008854 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006256000 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017457160 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038954709 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038954710 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038954711 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038954712 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038954713 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_063135262 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_063135263 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAA41618 | (Get FASTA) | NCBI Sequence Viewer |
| AAA72401 | (Get FASTA) | NCBI Sequence Viewer | |
| CAE84049 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL86699 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL86700 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL86701 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL86702 | (Get FASTA) | NCBI Sequence Viewer | |
| Ensembl Protein | ENSRNOP00000098186 | ||
| ENSRNOP00000098186.2 |
| RefSeq Acc Id: | NP_001008854 ⟸ NM_001008854 |
| - Peptide Label: | precursor |
| - UniProtKB: | Q6MFZ8 (UniProtKB/TrEMBL), V5ISG7 (UniProtKB/TrEMBL), R9Q796 (UniProtKB/TrEMBL), E9PSW1 (UniProtKB/TrEMBL), L7N647 (UniProtKB/TrEMBL), Q31279 (UniProtKB/TrEMBL), A0A8J8XQ64 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_006256000 ⟸ XM_006255938 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q6MFZ8 (UniProtKB/TrEMBL), V5ISG7 (UniProtKB/TrEMBL), R9Q796 (UniProtKB/TrEMBL), E9PSW1 (UniProtKB/TrEMBL), L7N647 (UniProtKB/TrEMBL), Q31279 (UniProtKB/TrEMBL), A0A8J8XQ64 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_017457160 ⟸ XM_017601671 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
| Ensembl Acc Id: | ENSRNOP00000074505 ⟸ ENSRNOT00000084770 |
| Ensembl Acc Id: | ENSRNOP00000075415 ⟸ ENSRNOT00000086026 |
| Ensembl Acc Id: | ENSRNOP00000049883 ⟸ ENSRNOT00000050159 |
| RefSeq Acc Id: | XP_038954712 ⟸ XM_039098784 |
| - Peptide Label: | isoform X3 |
| RefSeq Acc Id: | XP_038954713 ⟸ XM_039098785 |
| - Peptide Label: | isoform X4 |
| RefSeq Acc Id: | XP_038954709 ⟸ XM_039098781 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | R9Q796 (UniProtKB/TrEMBL), V5ISG7 (UniProtKB/TrEMBL), E9PSW1 (UniProtKB/TrEMBL), L7N647 (UniProtKB/TrEMBL), Q31279 (UniProtKB/TrEMBL), Q6MFZ8 (UniProtKB/TrEMBL), A0A8J8XQ64 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_038954710 ⟸ XM_039098782 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | R9Q796 (UniProtKB/TrEMBL), V5ISG7 (UniProtKB/TrEMBL), E9PSW1 (UniProtKB/TrEMBL), L7N647 (UniProtKB/TrEMBL), Q31279 (UniProtKB/TrEMBL), Q6MFZ8 (UniProtKB/TrEMBL), A0A8J8XQ64 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_038954711 ⟸ XM_039098783 |
| - Peptide Label: | isoform X2 |
| RefSeq Acc Id: | XP_063135262 ⟸ XM_063279192 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | E9PSW1 (UniProtKB/TrEMBL), L7N647 (UniProtKB/TrEMBL), Q31279 (UniProtKB/TrEMBL), Q6MFZ8 (UniProtKB/TrEMBL), R9Q796 (UniProtKB/TrEMBL), V5ISG7 (UniProtKB/TrEMBL), A0A8J8XQ64 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_063135263 ⟸ XM_063279193 |
| - Peptide Label: | isoform X2 |
| Ensembl Acc Id: | ENSRNOP00000098186 ⟸ ENSRNOT00000120544 |
| Name | Modeler | Protein Id | AA Range | Protein Structure |
| AF-Q6MFZ8-F1-model_v2 | AlphaFold | Q6MFZ8 | 1-377 | view protein structure |
| eQTL | View at Phenogen | |
| WGCNA | View at Phenogen | |
| Tissue/Strain Expression | View at Phenogen |
| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1595850 | AgrOrtholog |
| BioCyc Gene | G2FUF-4821 | BioCyc |
| Ensembl Genes | ENSRNOG00000029386 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000120544 | ENTREZGENE |
| ENSRNOT00000120544.2 | UniProtKB/TrEMBL | |
| Gene3D-CATH | 2.60.40.10 | UniProtKB/TrEMBL |
| 3.30.500.10 | UniProtKB/TrEMBL | |
| InterPro | Ig-like | UniProtKB/TrEMBL |
| Ig-like_dom_sf | UniProtKB/TrEMBL | |
| Ig-like_fold | UniProtKB/TrEMBL | |
| Ig/MHC_CS | UniProtKB/TrEMBL | |
| Ig_C1-set | UniProtKB/TrEMBL | |
| MHC_class-I_related | UniProtKB/TrEMBL | |
| MHC_I-like_Ag-recog | UniProtKB/TrEMBL | |
| MHC_I-like_Ag-recog_sf | UniProtKB/TrEMBL | |
| MHC_I/II-like_Ag-recog | UniProtKB/TrEMBL | |
| MHC_I_a_a1/a2 | UniProtKB/TrEMBL | |
| KEGG Report | rno:360323 | UniProtKB/TrEMBL |
| NCBI Gene | 360323 | ENTREZGENE |
| PANTHER | HISTOCOMPATIBILITY 2, T REGION LOCUS 10-RELATED | UniProtKB/TrEMBL |
| MHC CLASS I-RELATED | UniProtKB/TrEMBL | |
| Pfam | C1-set | UniProtKB/TrEMBL |
| MHC_I | UniProtKB/TrEMBL | |
| PhenoGen | RT1-N2 | PhenoGen |
| PRINTS | MHCCLASSI | UniProtKB/TrEMBL |
| PROSITE | IG_LIKE | UniProtKB/TrEMBL |
| IG_MHC | UniProtKB/TrEMBL | |
| RatGTEx | ENSRNOG00000029386 | RatGTEx |
| SMART | IGc1 | UniProtKB/TrEMBL |
| Superfamily-SCOP | MHC_I/II-like_Ag-recog | UniProtKB/TrEMBL |
| SSF48726 | UniProtKB/TrEMBL | |
| UniProt | A0A8J8XQ64 | ENTREZGENE |
| A0ABK0LBK0_RAT | UniProtKB/TrEMBL | |
| E9PSW1 | ENTREZGENE | |
| L7N647 | ENTREZGENE | |
| Q31279 | ENTREZGENE | |
| Q6MFZ8 | ENTREZGENE, UniProtKB/TrEMBL | |
| R9Q796 | ENTREZGENE | |
| V5ISG7 | ENTREZGENE, UniProtKB/TrEMBL | |
| UniProt Secondary | E9PSW1 | UniProtKB/TrEMBL |
| L7N647 | UniProtKB/TrEMBL | |
| Q31279 | UniProtKB/TrEMBL | |
| R9Q796 | UniProtKB/TrEMBL |
| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2009-09-15 | RT1-N2 | RT1 class Ib, locus N2 | RT1-N2 | RT1 class Ib gene, H2-TL-like, grc region(N2) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2007-04-12 | RT1-N2 | RT1 class Ib gene, H2-TL-like, grc region(N2) | RT1-N2_mapped | RT1 class Ib gene, H2-TL-like, grc region(N2) (mapped) | Data merged from RGD:3499 | 737654 | APPROVED |
| 2006-11-20 | RT1-N2_mapped | RT1 class Ib gene, H2-TL-like, grc region(N2)(mapped) | RT1-N2 | RT1 class Ib gene, H2-TL-like, grc region(N2) | Symbol set to symbol_mapped, name set to name (mapped) | 1582166 | APPROVED |
| 2006-11-20 | RT1-N2 | RT1 class Ib gene, H2-TL-like, grc region(N2) | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
| 2004-02-11 | RT1-N2 | RT1 class Ib, locus H2-TL-like, grc region (N2) | Symbol and Name status set to approved | 625702 | APPROVED | ||
| 2002-06-10 | RT1-N2 | RT1 class Ib gene, H2-TL-like, grc region | Symbol and Name status set to approved | 70586 | APPROVED |