Arhgap26 (Rho GTPase activating protein 26)

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Gene: Arhgap26 (Rho GTPase activating protein 26) Rattus norvegicus

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Symbol:

Arhgap26

Name:

Rho GTPase activating protein 26

RGD ID:

1310923

Description:

Predicted to enable GTPase activator activity; phospholipid binding activity; and protein-macromolecule adaptor activity. Predicted to be involved in mitophagy. Predicted to be located in cytosol and endosome membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in acute myelomonocytic leukemia and juvenile myelomonocytic leukemia. Orthologous to human ARHGAP26 (Rho GTPase activating protein 26); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC307459; rho GTPase-activating protein 26

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARHGAP26 (Rho GTPase activating protein 26)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Arhgap26 (Rho GTPase activating protein 26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arhgap26 (Rho GTPase activating protein 26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARHGAP26 (Rho GTPase activating protein 26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARHGAP26 (Rho GTPase activating protein 26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arhgap26 (Rho GTPase activating protein 26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARHGAP26 (Rho GTPase activating protein 26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARHGAP26 (Rho GTPase activating protein 26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arhgap26 (Rho GTPase activating protein 26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ARHGAP26 (Rho GTPase activating protein 26)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arhgap26 (Rho GTPase activating protein 26)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Graf	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T04C9.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arhgap26	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	30,702,602 - 31,489,047 (+)	NCBI		GRCr8
mRatBN7.2	18	30,835,806 - 31,237,945 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	30,838,671 - 31,235,194 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	30,942,835 - 31,342,100 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	31,823,102 - 32,109,068 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	31,038,061 - 31,437,340 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	31,807,052 - 32,557,176 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	31,812,109 - 32,207,801 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	31,484,480 - 31,890,142 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	31,934,753 - 32,327,551 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	31,969,213 - 32,366,772 (+)	NCBI
Celera	18	30,473,925 - 30,862,447 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myelomonocytic leukemia (ISO)

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

juvenile myelomonocytic leukemia (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

avobenzone (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beryllium sulfate (ISO)

beta-carotene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

diclofenac (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

L-methionine (ISO)

maneb (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

sodium arsenite (ISO)

sodium dichromate (ISO)

sulforaphane (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

tungsten (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

zearalenone (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

mitophagy (ISO)

signal transduction (IEA)

Cellular Component

cytoskeleton (IEA)

cytosol (ISO)

endosome membrane (ISO)

focal adhesion (IEA)

mitochondrion (ISO)

synapse (IEA)

Molecular Function

GTPase activator activity (IBA)

phospholipid binding (ISO)

protein binding (ISO)

protein-macromolecule adaptor activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The human GRAF gene is fused to MLL in a unique t(5;11)(q31;q23) and both alleles are disrupted in three cases of myelodysplastic syndrome/acute myeloid leukemia with a deletion 5q.	Borkhardt A, etal., Proc Natl Acad Sci U S A. 2000 Aug 1;97(16):9168-73.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:18954304	PMID:22871113

Genomics

Comparative Map Data

Arhgap26
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	30,702,602 - 31,489,047 (+)	NCBI		GRCr8
mRatBN7.2	18	30,835,806 - 31,237,945 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	30,838,671 - 31,235,194 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	30,942,835 - 31,342,100 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	31,823,102 - 32,109,068 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	31,038,061 - 31,437,340 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	31,807,052 - 32,557,176 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	31,812,109 - 32,207,801 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	31,484,480 - 31,890,142 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	31,934,753 - 32,327,551 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	31,969,213 - 32,366,772 (+)	NCBI
Celera	18	30,473,925 - 30,862,447 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

ARHGAP26
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	142,770,377 - 143,229,011 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	142,770,377 - 143,229,011 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	142,149,942 - 142,608,576 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	142,130,476 - 142,588,765 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	142,130,475 - 142,586,243	NCBI
Celera	5	138,231,606 - 138,689,843 (+)	NCBI		Celera
Cytogenetic Map	5	q31.3	NCBI
HuRef	5	137,297,685 - 137,755,859 (+)	NCBI		HuRef
CHM1_1	5	141,583,958 - 142,042,097 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	143,301,685 - 143,760,366 (+)	NCBI		T2T-CHM13v2.0

Arhgap26
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	38,734,531 - 39,509,338 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	38,809,771 - 39,243,587 (+)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	18	39,126,198 - 39,509,337 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	38,601,617 - 39,376,285 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	38,676,718 - 39,110,534 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	18	38,993,145 - 39,376,284 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	39,152,799 - 39,535,939 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	39,119,119 - 39,502,259 (+)	NCBI		MGSCv36	mm8
Celera	18	40,342,827 - 40,729,629 (+)	NCBI		Celera
Cytogenetic Map	18	B3	NCBI
cM Map	18	20.51	NCBI

Arhgap26
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	10,637,036 - 11,066,942 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	10,635,410 - 11,066,551 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARHGAP26
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	138,013,059 - 138,473,459 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	136,152,606 - 136,613,010 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	138,125,142 - 138,585,550 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	144,234,924 - 144,692,794 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	144,234,913 - 144,686,252 (+)	Ensembl	panpan1.1		panPan2

ARHGAP26
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	37,627,448 - 38,045,589 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	37,626,698 - 38,040,079 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	34,680,038 - 35,098,851 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	38,083,780 - 38,503,041 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	38,082,980 - 38,503,041 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	35,161,756 - 35,580,842 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	35,974,945 - 36,394,221 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	36,776,768 - 37,196,026 (+)	NCBI		UU_Cfam_GSD_1.0

Arhgap26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	149,532,091 - 149,957,881 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	11,108,092 - 11,531,861 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	11,106,030 - 11,531,854 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGAP26
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	144,301,413 - 144,778,072 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	144,301,234 - 144,778,090 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	150,495,714 - 150,918,740 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGAP26
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	45,399,159 - 45,860,331 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	45,399,259 - 45,849,040 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	31,987,248 - 32,447,720 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgap26
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	1,977,963 - 2,442,410 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624774	1,978,049 - 2,443,632 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arhgap26
1474 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	26
Count of miRNA genes:	26
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000018843
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	18234564	31359530	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26548082	46969551	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26548082	46969551	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26548082	46969551	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	22066242	52293055	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26548082	46969551	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2300157	Bmd66	Bone mineral density QTL 66	13.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
738005	Anxrr11	Anxiety related response QTL 11	3.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	18	30039813	75039813	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26548082	46969551	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26548082	46969551	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26548082	46969551	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
2293704	Bss35	Bone structure and strength QTL 35	4.59	0.0002	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	18	28964853	73964853	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	29792965	74792965	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	18234564	31359530	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	29792965	74792965	Rat
2300177	Bmd65	Bone mineral density QTL 65	19.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	29792965	74792965	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	29792965	74792965	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat

Markers in Region

D18Got32

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	31,222,380 - 31,222,575 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	31,822,422 - 31,822,616	NCBI	Rnor6.0
Rnor_5.0	18	31,499,850 - 31,500,044	UniSTS	Rnor5.0
RGSC_v3.4	18	32,321,089 - 32,321,284	RGD	RGSC3.4
RGSC_v3.4	18	32,321,090 - 32,321,284	UniSTS	RGSC3.4
RGSC_v3.1	18	32,356,356 - 32,356,550	RGD
Celera	18	30,856,003 - 30,856,197	UniSTS
RH 3.4 Map	18	444.8	UniSTS
RH 3.4 Map	18	444.8	RGD
RH 2.0 Map	18	495.2	RGD
Cytogenetic Map	18	p11	UniSTS

D18Chm42

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	30,862,646 - 30,862,802 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	32,183,671 - 32,183,828	NCBI	Rnor6.0
Rnor_5.0	18	31,863,090 - 31,863,247	UniSTS	Rnor5.0
RGSC_v3.4	18	31,958,726 - 31,958,883	UniSTS	RGSC3.4
Celera	18	30,497,889 - 30,498,046	UniSTS
Cytogenetic Map	18	p11	UniSTS

MHAa67b10.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	31,154,875 - 31,155,047 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	31,889,620 - 31,889,791	NCBI	Rnor6.0
Rnor_5.0	18	31,566,936 - 31,567,107	UniSTS	Rnor5.0
RGSC_v3.4	18	32,252,519 - 32,252,690	UniSTS	RGSC3.4
Celera	18	30,788,952 - 30,789,123	UniSTS
Cytogenetic Map	18	p11	UniSTS

BF392044

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	31,114,363 - 31,114,506 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	31,931,521 - 31,931,663	NCBI	Rnor6.0
Rnor_5.0	18	31,608,027 - 31,608,169	UniSTS	Rnor5.0
RGSC_v3.4	18	32,210,400 - 32,210,542	UniSTS	RGSC3.4
Celera	18	30,747,988 - 30,748,130	UniSTS
RH 3.4 Map	18	439.5	UniSTS
Cytogenetic Map	18	p11	UniSTS

BE097330

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	30,835,777 - 30,835,943 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	32,210,528 - 32,210,693	NCBI	Rnor6.0
Rnor_5.0	18	31,889,947 - 31,890,112	UniSTS	Rnor5.0
RGSC_v3.4	18	31,931,861 - 31,932,026	UniSTS	RGSC3.4
Celera	18	30,471,033 - 30,471,198	UniSTS
RH 3.4 Map	18	442.8	UniSTS
Cytogenetic Map	18	p11	UniSTS

BE120196

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	31,174,148 - 31,174,314 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	31,870,681 - 31,870,846	NCBI	Rnor6.0
Rnor_5.0	18	31,548,109 - 31,548,274	UniSTS	Rnor5.0
RGSC_v3.4	18	32,270,990 - 32,271,155	UniSTS	RGSC3.4
Celera	18	30,808,268 - 30,808,433	UniSTS
RH 3.4 Map	18	443.9	UniSTS
Cytogenetic Map	18	p11	UniSTS

BM385892

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	30,841,745 - 30,841,959 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	32,204,513 - 32,204,726	NCBI	Rnor6.0
Rnor_5.0	18	31,883,932 - 31,884,145	UniSTS	Rnor5.0
RGSC_v3.4	18	31,937,828 - 31,938,041	UniSTS	RGSC3.4
Celera	18	30,476,989 - 30,477,202	UniSTS
RH 3.4 Map	18	445.2	UniSTS
Cytogenetic Map	18	p11	UniSTS

Tuba2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	18	31,590,656 - 31,590,810	NCBI	Rnor5.0
RGSC_v3.4	18	32,227,767 - 32,227,920	UniSTS	RGSC3.4
Celera	18	30,765,355 - 30,765,508	UniSTS
Cytogenetic Map	18	p11	UniSTS

ECD04098

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	30,839,016 - 30,839,749 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	32,206,723 - 32,207,455	NCBI	Rnor6.0
Rnor_5.0	18	31,886,142 - 31,886,874	UniSTS	Rnor5.0
Cytogenetic Map	18	p11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

appendage

High

Medium

119

Low

203

147

131

106

130

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001395140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC127951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC132058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018843 ⟹ ENSRNOP00000018843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,838,671 - 31,228,842 (+)	Ensembl
Rnor_6.0 Ensembl	18	31,816,155 - 32,207,801 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090882 ⟹ ENSRNOP00000073385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,838,671 - 31,186,667 (+)	Ensembl
Rnor_6.0 Ensembl	18	31,812,109 - 32,207,749 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101992 ⟹ ENSRNOP00000096429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,838,671 - 31,235,194 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102830 ⟹ ENSRNOP00000098009

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,838,671 - 31,225,647 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106545 ⟹ ENSRNOP00000094639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,838,671 - 31,235,194 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111290 ⟹ ENSRNOP00000078827

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,838,671 - 31,235,194 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115900 ⟹ ENSRNOP00000090557

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,838,671 - 31,235,194 (+)	Ensembl

RefSeq Acc Id:

NM_001395140 ⟹ NP_001382069

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	31,089,787 - 31,489,047 (+)	NCBI
mRatBN7.2	18	30,838,671 - 31,237,945 (+)	NCBI

RefSeq Acc Id:

XM_006254660 ⟹ XP_006254722

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	31,086,895 - 31,489,047 (+)	NCBI
mRatBN7.2	18	30,835,806 - 31,232,689 (+)	NCBI
Rnor_6.0	18	31,812,308 - 32,207,856 (-)	NCBI
Rnor_5.0	18	31,484,480 - 31,890,142 (-)	NCBI

Sequence:

show sequence

GTCATCGCTAGCAGGTTCGGGCGGCCCGGACGCCGGCGGGGCGGCCGAGGCTTCTGTGAGAGGG
CGCTCGAGGCTGCTCGAGGCTGCTGAGGAGCAAGCCCGCAGAGGAGGCGGGGAGGCGGTGGCCG
CGCTCGTTCGCTTCCAGGCGCCGCCAAGGGTCCGACGCTGCGCCTTCGGCCGGTGTGCAGTTCG
GTGTCTCTCAGCAGTAGTAGCCGCCGTCCGTCCGGATCCGGGTTGCTGTCCTGAGTCTCCTGCT
CCCGCTGACCCCGCGCGCGGGATAACCGGCGCCACCCACACCTGTGGATCGGCCGTCGTCGCGT
GTGTCCGCCGACCAGCGTGCAAGGCGCATCCCTTCAGCCCGGCTCCACAGGGAGAATGGGGCTC
CCGGCGCTCGAGTTCAGCGACTGCTGCCTCGACAGCCCTCACTTCCGAGAGACTCTCAAGTCCC
ACGAAGCGGAGCTGGACAAGACCAACAAATTCATCAAGGAACTCATCAAGGACGGGAAGTCGCT
CATCAGCGCGCTCAAGAATTTATCTTCAGCAAAGCGGAAGTTTGCAGATTCCTTAAATGAATTT
AAATTTCAGTGTATAGGAGATGCAGAAACAGATGACGAGATGTGTATAGCGAGATCTTTGCAAG
AATTTGCCACTGTTCTCAGGAATCTTGAAGATGAACGGAGTCGAATGATTGAGAATGCCAGTGA
GGTGCTCATCACACCCTTGGAGAAGTTTCGCAAGGAGCAGATCGGGGCAGCCAGGGAAGCCAAA
AAGAAGTATGACAAAGAGACAGAGAAGTATTGTGGCACCTTAGAAAAGCATCTGAATTTGTCTT
CCAAAAAGAAGGAATCCCAGCTACAGGAGGCAGACAGCCAAGTGGACCTAGTTCGACAACATTT
CTACGAAGTGTCCCTGGAGTATGTCTTTAAGGTGCAGGAAGTGCAAGAGAGAAAGATGTTTGAG
TTCGTAGAGCCTCTACTGGCCTTCCTGCAAGGACTCTTCACTTTCTACCACCATGGTTATGAGC
TGGCCAAGGATTTTGGTGACTTTAAGACACAGTTGACCATCAGCATACAAAATACAAGAAACCG
CTTTGAAGGAACCAGGTCTGAAGTGGAATCTCTGATGAAGAAGATGAAGGAAAACCCCCTTGAA
CACAAGACCATCAGCCCGTACACCATGGAAGGGTACCTGTATGTGCAGGAGAAACGTCACTTTG
GAACTTCCTGGGTGAAGCACTACTGTACATACCAACGGGATTCCAAGCAAATCACCATGGTTCC
GTTTGACCAAAAGTCAGGAGGAAAGGGGGGAGAAGACGAGTCTGTCACCCTCAAATCCTGCACA
CGGCGAAAGACAGACTCCATCGAGAAGAGATTCTGCTTTGATGTGGAAGCGGTAGACAGGCCAG
GGGTTATCACCATGCAGGCGTTGTCGGAAGAGGACCGTAGGCTCTGGATGGAAGCCATGGACGG
CCGGGAACCTGTCTACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCACAGTTGGACAGC
ATCGGCTTCAGCATAATAAGGAAATGCATCCATGCGGTGGAAACCAGAGGGATCAATGAACAGG
GACTCTACCGAATCGTGGGGGTCAACTCCAGAGTGCAGAAGTTGCTGAGTGTCCTGATGGACCC
CAAAGCAGCGTCTGAGACAGAAACTGACATCTGTGCCGAATGGGAGATAAAGACCGTCACTAGT
GCTCTGAAGACCTACCTGAGAATGCTTCCAGGACCGCTCATGATGTACCAGTTTCAAAGAAGTT
TCATCAAGGCTGCAAAGCTGGAAAACCAAGAGACTCGCGTCTCTGAGATCCATAGCCTTGTTCA
TCGGCTCCCAGAGAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCACCTGGCAAACGTTGCT
AACAACCACAAGCAGAATCTGATGACTGTGGCAAACCTTGGTGTAGTGTTTGGACCCACCTTGC
TGCGACCTCAGGAAGAAACCGTGGCAGCCATCATGGACATCAAGTTTCAGAACATTGTCATCGA
GATCTTAATAGAGAACCATGAGAAGATATTCAACACGGTGCCTGATGTGCCCCTCACCAACGCC
CAGCTACACCTGTCCCGGAAGAAAAGCAGCGACTCCAAGCCCCCATCCTGCAGTGAGAGGCCCC
TGACACTCTTCCATGCTGTGCCGTCCACAGAAAAACAGGAGCAAAGGAATAGTATCATCAACTC
CAGTTTGGAATCAGTCTCCTCAAGTGCGAACAGCATCCTTAATTCTAGCAGCAGCCTGCAGCCC
AACATGAACTTCAGCGACCCAAGCCTGGATGTGGTCAAACCTACTCGGCCCAATTCACTCCCCC
CGAATCCAAGCCCAACTTCACCCCTCTCGCCATCATGGCCCATGTTCTCGGCGCCATCCAGCCC
TATGCCCACCTCATCCACGTCCAGCGACTCATCCCCCATCAGGTCTGTGGCAGGGTTTGTTTGG
TTTTCTGTTGCTGCCGTTGTTCTCTCATTGGCTTGGTCCTCTCTTCATGCAGTGTTCAGCCTCC
TCGTCAACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGAAGTGGT
CCATGAAGACTCCAGCACACCGTTCCGGAAGGCAAAGGCTTTGTACGCCTGCAAAGCTGAGCAC
GACTCGGAACTCTCCTTCACGGCAGGCACCGTCTTCGATAATGTTCACCCGTCTCAGGAGCCTG
GCTGGTTGGAGGGGACTCTGAATGGAAAGACTGGCCTCATCCCAGAGAACTACGTGGAGTTCCT
CTAA

hide sequence

RefSeq Acc Id:

XM_006254663 ⟹ XP_006254725

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	31,086,895 - 31,489,047 (+)	NCBI
mRatBN7.2	18	30,838,991 - 31,232,689 (+)	NCBI
Rnor_6.0	18	31,812,308 - 32,207,481 (-)	NCBI
Rnor_5.0	18	31,484,480 - 31,890,142 (-)	NCBI

Sequence:

show sequence

ATGGGGCTCCCGGCGCTCGAGTTCAGCGACTGCTGCCTCGACAGCCCTCACTTCCGAGAGACTC
TCAAGTCCCACGAAGCGGAGCTGGACAAGACCAACAAATTCATCAAGGAACTCATCAAGGACGG
GAAGTCGCTCATCAGCGCGCTCAAGAATTTATCTTCAGCAAAGCGGAAGTTTGCAGATTCCTTA
AATGAATTTAAATTTCAGTGTATAGGAGATGCAGAAACAGATGACGAGATGTGTATAGCGAGAT
CTTTGCAAGAATTTGCCACTGTTCTCAGGAATCTTGAAGATGAACGGAGTCGAATGATTGAGAA
TGCCAGTGAGGTGCTCATCACACCCTTGGAGAAGTTTCGCAAGGAGCAGATCGGGGCAGCCAGG
GAAGCCAAAAAGAAGTATGACAAAGAGACAGAGAAGTATTGTGGCACCTTAGAAAAGCATCTGA
ATTTGTCTTCCAAAAAGAAGGAATCCCAGCTACAGGAGGCAGACAGCCAAGTGGACCTAGTTCG
ACAACATTTCTACGAAGTGTCCCTGGAGTATGTCTTTAAGGTGCAGGAAGTGCAAGAGAGAAAG
ATGTTTGAGTTCGTAGAGCCTCTACTGGCCTTCCTGCAAGGACTCTTCACTTTCTACCACCATG
GTTATGAGCTGGCCAAGGATTTTGGTGACTTTAAGACACAGTTGACCATCAGCATACAAAATAC
AAGAAACCGCTTTGAAGGAACCAGGTCTGAAGTGGAATCTCTGATGAAGAAGATGAAGGAAAAC
CCCCTTGAACACAAGACCATCAGCCCGTACACCATGGAAGGGTACCTGTATGTGCAGGAGAAAC
GTCACTTTGGAACTTCCTGGGTGAAGCACTACTGTACATACCAACGGGATTCCAAGCAAATCAC
CATGGTTCCGTTTGACCAAAAGTCAGGAGGAAAGGGGGGAGAAGACGAGTCTGTCACCCTCAAA
TCCTGCACACGGCGAAAGACAGACTCCATCGAGAAGAGATTCTGCTTTGATGTGGAAGCGGTAG
ACAGGCCAGGGGTTATCACCATGCAGGCGTTGTCGGAAGAGGACCGTAGGCTCTGGATGGAAGC
CATGGACGGCCGGGAACCTGTCTACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCACAG
TTGGACAGCATCGGCTTCAGCATAATAAGGAAATGCATCCATGCGGTGGAAACCAGAGGGATCA
ATGAACAGGGACTCTACCGAATCGTGGGGGTCAACTCCAGAGTGCAGAAGTTGCTGAGTGTCCT
GATGGACCCCAAAGCAGCGTCTGAGACAGAAACTGACATCTGTGCCGAATGGGAGATAAAGACC
GTCACTAGTGCTCTGAAGACCTACCTGAGAATGCTTCCAGGACCGCTCATGATGTACCAGTTTC
AAAGAAGTTTCATCAAGGCTGCAAAGCTGGAAAACCAAGAGACTCGCGTCTCTGAGATCCATAG
CCTTGTTCATCGGCTCCCAGAGAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCACCTGGCA
AACGTTGCTAACAACCACAAGCAGAATCTGATGACTGTGGCAAACCTTGGTGTAGTGTTTGGAC
CCACCTTGCTGCGACCTCAGGAAGAAACCGTGGCAGCCATCATGGACATCAAGTTTCAGAACAT
TGTCATCGAGATCTTAATAGAGAACCATGAGAAGATATTCAACACGGTGCCTGATGTGCCCCTC
ACCAACGCCCAGCTACACCTGTCCCGGAAGAAAAGCAGCGACTCCAAGCCCCCATCCTGCAGTG
AGAGGCCCCTGACACTCTTCCATGCTGTGCCGTCCACAGAAAAACAGGAGCAAAGGAATAGTAT
CATCAACTCCAGTTTGGAATCAGTCTCCTCAAGTGCGAACAGCATCCTTAATTCTAGCAGCAGC
CTGCAGCCCAACATGAACTTCAGCGACCCAAGCCTGGATGTGGTCAAACCTACTCGGCCCAATT
CACTCACACCGTTCCGGAAGGCAAAGGCTTTGTACGCCTGCAAAGCTGAGCACGACTCGGAACT
CTCCTTCACGGCAGGCACCGTCTTCGATAATGTTCACCCGTCTCAGGAGCCTGGCTGGTTGGAG
GGGACTCTGAATGGAAAGACTGGCCTCATCCCAGAGAACTACGTGGAGTTCCTCTAA

hide sequence

RefSeq Acc Id:

XM_063277362 ⟹ XP_063133432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	30,702,602 - 31,489,047 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001382069	(Get FASTA)	NCBI Sequence Viewer
	XP_006254722	(Get FASTA)	NCBI Sequence Viewer
	XP_006254725	(Get FASTA)	NCBI Sequence Viewer
	XP_063133432	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76461	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018843.5
	ENSRNOP00000073385.2
	ENSRNOP00000078827.1
	ENSRNOP00000090557.1
	ENSRNOP00000094639.1
	ENSRNOP00000096429.1
	ENSRNOP00000098009.1

RefSeq Acc Id:	XP_006254722 ⟸ XM_006254660
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6APL5 (UniProtKB/TrEMBL), A0A8I6AL79 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGLPALEFSDCCLDSPHFRETLKSHEAELDKTNKFIKELIKDGKSLISALKNLSSAKRKFADSL NEFKFQCIGDAETDDEMCIARSLQEFATVLRNLEDERSRMIENASEVLITPLEKFRKEQIGAAR EAKKKYDKETEKYCGTLEKHLNLSSKKKESQLQEADSQVDLVRQHFYEVSLEYVFKVQEVQERK MFEFVEPLLAFLQGLFTFYHHGYELAKDFGDFKTQLTISIQNTRNRFEGTRSEVESLMKKMKEN PLEHKTISPYTMEGYLYVQEKRHFGTSWVKHYCTYQRDSKQITMVPFDQKSGGKGGEDESVTLK SCTRRKTDSIEKRFCFDVEAVDRPGVITMQALSEEDRRLWMEAMDGREPVYNSNKDSQSEGTAQ LDSIGFSIIRKCIHAVETRGINEQGLYRIVGVNSRVQKLLSVLMDPKAASETETDICAEWEIKT VTSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQETRVSEIHSLVHRLPEKNRQMLQLLMNHLA NVANNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIFNTVPDVPL TNAQLHLSRKKSSDSKPPSCSERPLTLFHAVPSTEKQEQRNSIINSSLESVSSSANSILNSSSS LQPNMNFSDPSLDVVKPTRPNSLPPNPSPTSPLSPSWPMFSAPSSPMPTSSTSSDSSPIRSVAG FVWFSVAAVVLSLAWSSLHAVFSLLVNFVPCHPNLHLLFDRPEEVVHEDSSTPFRKAKALYACK AEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFL hide sequence

RefSeq Acc Id:	XP_006254725 ⟸ XM_006254663
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AAB3 (UniProtKB/TrEMBL), A0A8I5ZLR1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGLPALEFSDCCLDSPHFRETLKSHEAELDKTNKFIKELIKDGKSLISALKNLSSAKRKFADSL NEFKFQCIGDAETDDEMCIARSLQEFATVLRNLEDERSRMIENASEVLITPLEKFRKEQIGAAR EAKKKYDKETEKYCGTLEKHLNLSSKKKESQLQEADSQVDLVRQHFYEVSLEYVFKVQEVQERK MFEFVEPLLAFLQGLFTFYHHGYELAKDFGDFKTQLTISIQNTRNRFEGTRSEVESLMKKMKEN PLEHKTISPYTMEGYLYVQEKRHFGTSWVKHYCTYQRDSKQITMVPFDQKSGGKGGEDESVTLK SCTRRKTDSIEKRFCFDVEAVDRPGVITMQALSEEDRRLWMEAMDGREPVYNSNKDSQSEGTAQ LDSIGFSIIRKCIHAVETRGINEQGLYRIVGVNSRVQKLLSVLMDPKAASETETDICAEWEIKT VTSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQETRVSEIHSLVHRLPEKNRQMLQLLMNHLA NVANNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIFNTVPDVPL TNAQLHLSRKKSSDSKPPSCSERPLTLFHAVPSTEKQEQRNSIINSSLESVSSSANSILNSSSS LQPNMNFSDPSLDVVKPTRPNSLTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLE GTLNGKTGLIPENYVEFL hide sequence

Ensembl Acc Id:

ENSRNOP00000018843 ⟸ ENSRNOT00000018843

Ensembl Acc Id:

ENSRNOP00000073385 ⟸ ENSRNOT00000090882

Ensembl Acc Id:

ENSRNOP00000096429 ⟸ ENSRNOT00000101992

Ensembl Acc Id:

ENSRNOP00000098009 ⟸ ENSRNOT00000102830

Ensembl Acc Id:

ENSRNOP00000094639 ⟸ ENSRNOT00000106545

Ensembl Acc Id:

ENSRNOP00000078827 ⟸ ENSRNOT00000111290

Ensembl Acc Id:

ENSRNOP00000090557 ⟸ ENSRNOT00000115900

RefSeq Acc Id:	NP_001382069 ⟸ NM_001395140
- UniProtKB:	A0A8I6AL79 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133432 ⟸ XM_063277362
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZLR1 (UniProtKB/TrEMBL)

Protein Domains

PH Rho-GAP SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZMS4-F1-model_v2	AlphaFold	D3ZMS4	1-761	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700748

Promoter ID:

EPDNEW_R11265

Type:

multiple initiation site

Name:

Arhgap26_1

Description:

Rho GTPase activating protein 26

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	32,207,787 - 32,207,847	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310923	AgrOrtholog
BioCyc Gene	G2FUF-7748	BioCyc
Ensembl Genes	ENSRNOG00000013920	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018843.6	UniProtKB/TrEMBL
	ENSRNOT00000090882.2	UniProtKB/TrEMBL
	ENSRNOT00000101992.1	UniProtKB/TrEMBL
	ENSRNOT00000102830.1	UniProtKB/TrEMBL
	ENSRNOT00000106545.1	UniProtKB/TrEMBL
	ENSRNOT00000111290.1	UniProtKB/TrEMBL
	ENSRNOT00000115900.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.555.10	UniProtKB/TrEMBL
	1.20.1270.60	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	AH/BAR-dom	UniProtKB/TrEMBL
	BAR_dom	UniProtKB/TrEMBL
	GRAF_BAR	UniProtKB/TrEMBL
	GRAF_fam	UniProtKB/TrEMBL
	GRAF_SH3	UniProtKB/TrEMBL
	PH_GRAF	UniProtKB/TrEMBL
	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	RhoGAP_dom	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
NCBI Gene	307459	ENTREZGENE
PANTHER	OLIGOPHRENIN 1	UniProtKB/TrEMBL
	PTHR12552:SF4	UniProtKB/TrEMBL
	RHO GTPASE-ACTIVATING PROTEIN GRAF	UniProtKB/TrEMBL
Pfam	BAR_3	UniProtKB/TrEMBL
	PF00169	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
	SH3_9	UniProtKB/TrEMBL
PhenoGen	Arhgap26	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/TrEMBL
	RHOGAP	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013920	RatGTEx
SMART	RhoGAP	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	Rho_GAP	UniProtKB/TrEMBL
	SSF103657	UniProtKB/TrEMBL
	SSF50044	UniProtKB/TrEMBL
UniProt	A0A0G2K5D5_RAT	UniProtKB/TrEMBL
	A0A8I5ZLR1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AAB3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AL79	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6APL5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GMS4_RAT	UniProtKB/TrEMBL
	A6J3H9_RAT	UniProtKB/TrEMBL
	D3ZMS4_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Arhgap26	Rho GTPase activating protein 26	Arhgap26_predicted	Rho GTPase activating protein 26 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Arhgap26_predicted	Rho GTPase activating protein 26 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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