Pla2r1 (phospholipase A2 receptor 1) - Rat Genome Database

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Gene: Pla2r1 (phospholipase A2 receptor 1) Rattus norvegicus
Analyze
Symbol: Pla2r1
Name: phospholipase A2 receptor 1
RGD ID: 1309777
Description: Predicted to enable phospholipase binding activity and signaling receptor activity. Predicted to be involved in several processes, including negative regulation of phospholipase A2 activity; oxidative stress-induced premature senescence; and regulation of arachidonate secretion. Predicted to be located in cell surface and extracellular region. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Orthologous to human PLA2R1 (phospholipase A2 receptor 1); PARTICIPATES IN phagocytosis pathway; tuberculosis pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC102553743; LOC295631; mannose receptor, C type 2; Mrc2; secretory phospholipase A2 receptor; secretory phospholipase A2 receptor-like; uncharacterized protein LOC102553743
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8365,292,629 - 65,422,462 (-)NCBIGRCr8
mRatBN7.2344,883,943 - 45,013,793 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl344,883,943 - 45,013,660 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx348,247,142 - 48,377,055 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0356,830,710 - 56,960,614 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0354,593,716 - 54,723,423 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0346,488,963 - 46,621,873 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl346,488,186 - 46,621,873 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0351,596,536 - 51,728,234 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4342,121,966 - 42,250,869 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1342,019,194 - 42,149,167 (-)NCBI
Celera342,925,061 - 43,047,841 (-)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7721806   PMID:7925459   PMID:10946309   PMID:11830583   PMID:12225974   PMID:15611272   PMID:19197340   PMID:23376485   PMID:23382219   PMID:25335547   PMID:38237745  


Genomics

Comparative Map Data
Pla2r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8365,292,629 - 65,422,462 (-)NCBIGRCr8
mRatBN7.2344,883,943 - 45,013,793 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl344,883,943 - 45,013,660 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx348,247,142 - 48,377,055 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0356,830,710 - 56,960,614 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0354,593,716 - 54,723,423 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0346,488,963 - 46,621,873 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl346,488,186 - 46,621,873 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0351,596,536 - 51,728,234 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4342,121,966 - 42,250,869 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1342,019,194 - 42,149,167 (-)NCBI
Celera342,925,061 - 43,047,841 (-)NCBICelera
Cytogenetic Map3q21NCBI
PLA2R1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382159,923,933 - 160,062,615 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2159,932,006 - 160,062,615 (-)EnsemblGRCh38hg38GRCh38
GRCh372160,788,517 - 160,919,126 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362160,506,258 - 160,627,367 (-)NCBINCBI36Build 36hg18NCBI36
Build 342160,623,518 - 160,744,628NCBI
Celera2154,409,843 - 154,530,612 (-)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2152,680,921 - 152,802,464 (-)NCBIHuRef
CHM1_12160,803,972 - 160,925,802 (-)NCBICHM1_1
T2T-CHM13v2.02160,390,236 - 160,520,476 (-)NCBIT2T-CHM13v2.0
Pla2r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39260,247,887 - 60,383,669 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl260,247,887 - 60,383,652 (-)EnsemblGRCm39 Ensembl
GRCm38260,417,543 - 60,553,326 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl260,417,543 - 60,553,308 (-)EnsemblGRCm38mm10GRCm38
MGSCv37260,257,096 - 60,391,318 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36260,219,878 - 60,354,100 (-)NCBIMGSCv36mm8
Celera262,114,846 - 62,248,845 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map234.65NCBI
Pla2r1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544913,542,458 - 13,653,901 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544913,542,458 - 13,653,907 (+)NCBIChiLan1.0ChiLan1.0
PLA2R1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21362,624,388 - 62,755,267 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B62,630,501 - 62,769,047 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B47,226,791 - 47,355,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B164,605,151 - 164,726,347 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B164,605,440 - 164,726,017 (-)Ensemblpanpan1.1panPan2
PLA2R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1365,696,733 - 5,793,599 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl365,698,429 - 5,794,204 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha365,835,012 - 5,950,082 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0365,820,158 - 5,935,288 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl365,822,692 - 5,935,691 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1365,837,695 - 5,952,707 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0365,881,284 - 5,995,878 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0365,990,064 - 6,105,088 (-)NCBIUU_Cfam_GSD_1.0
Pla2r1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303122,828,065 - 122,937,741 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646918,679,914 - 18,789,369 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646918,679,840 - 18,789,655 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLA2R1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1566,898,508 - 67,001,192 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11566,899,783 - 67,018,608 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21574,119,062 - 74,325,762 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLA2R1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11045,331,865 - 45,458,389 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1045,341,383 - 45,440,840 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040154,113,965 - 154,240,675 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pla2r1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247325,525,863 - 5,677,811 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247325,525,740 - 5,681,772 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pla2r1
662 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:101
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000011003
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33871036550302886Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat

Markers in Region
D3Chm55  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0346,506,024 - 46,506,234NCBIRnor6.0
Rnor_5.0351,613,597 - 51,613,807UniSTSRnor5.0
RGSC_v3.4342,138,824 - 42,139,039RGDRGSC3.4
RGSC_v3.4342,138,825 - 42,139,039UniSTSRGSC3.4
Celera342,942,112 - 42,942,336UniSTS
Cytogenetic Map3q21UniSTS
D3Chm54  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2344,991,938 - 44,992,173 (+)MAPPERmRatBN7.2
Rnor_6.0346,597,807 - 46,598,041NCBIRnor6.0
Rnor_5.0351,704,168 - 51,704,402UniSTSRnor5.0
RGSC_v3.4342,229,277 - 42,229,512RGDRGSC3.4
RGSC_v3.4342,229,278 - 42,229,512UniSTSRGSC3.4
Celera343,026,127 - 43,026,359UniSTS
Cytogenetic Map3q21UniSTS
RH129404  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2344,957,207 - 44,957,401 (+)MAPPERmRatBN7.2
Rnor_6.0346,562,713 - 46,562,905NCBIRnor6.0
Rnor_5.0351,669,074 - 51,669,266UniSTSRnor5.0
RGSC_v3.4342,194,659 - 42,194,852UniSTSRGSC3.4
Celera342,999,012 - 42,999,205UniSTS
RH 3.4 Map3594.0UniSTS
Cytogenetic Map3q21UniSTS
RH133142  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2344,917,800 - 44,917,982 (+)MAPPERmRatBN7.2
Rnor_6.0346,522,970 - 46,523,151NCBIRnor6.0
Rnor_5.0351,629,331 - 51,629,512UniSTSRnor5.0
RGSC_v3.4342,155,303 - 42,155,484UniSTSRGSC3.4
Celera342,959,921 - 42,960,102UniSTS
RH 3.4 Map3596.12UniSTS
Cytogenetic Map3q21UniSTS
AW535150  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2344,913,493 - 44,913,688 (+)MAPPERmRatBN7.2
Rnor_6.0346,518,501 - 46,518,695NCBIRnor6.0
Rnor_5.0351,626,074 - 51,626,268UniSTSRnor5.0
RGSC_v3.4342,151,304 - 42,151,498UniSTSRGSC3.4
Celera342,954,576 - 42,954,770UniSTS
RH 3.4 Map3593.61UniSTS
Cytogenetic Map3q21UniSTS
RH135377  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2344,953,408 - 44,953,608 (+)MAPPERmRatBN7.2
Rnor_6.0346,558,914 - 46,559,113NCBIRnor6.0
Rnor_5.0351,665,275 - 51,665,474UniSTSRnor5.0
RGSC_v3.4342,190,859 - 42,191,058UniSTSRGSC3.4
Celera342,995,213 - 42,995,412UniSTS
RH 3.4 Map3593.61UniSTS
Cytogenetic Map3q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 112 91 90 59 25 59 6 218 97 92 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000011003   ⟹   ENSRNOP00000011003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl344,883,943 - 45,013,660 (-)Ensembl
Rnor_6.0 Ensembl346,488,963 - 46,621,873 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079261   ⟹   ENSRNOP00000072915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl346,488,186 - 46,601,409 (-)Ensembl
RefSeq Acc Id: NM_001100837   ⟹   NP_001094307
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,292,629 - 65,422,335 (-)NCBI
mRatBN7.2344,883,943 - 45,013,660 (-)NCBI
Rnor_6.0346,488,963 - 46,621,873 (-)NCBI
Rnor_5.0351,596,536 - 51,728,234 (-)NCBI
Celera342,925,061 - 43,047,841 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104479   ⟹   XP_038960407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,292,644 - 65,403,971 (-)NCBI
mRatBN7.2344,883,958 - 44,995,287 (-)NCBI
RefSeq Acc Id: XM_039104480   ⟹   XP_038960408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,311,658 - 65,422,462 (-)NCBI
mRatBN7.2344,904,151 - 45,013,793 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001094307 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960408 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM00377 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011003.6
RefSeq Acc Id: NP_001094307   ⟸   NM_001100837
- Peptide Label: precursor
- UniProtKB: F1M495 (UniProtKB/TrEMBL),   A6JF83 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072915   ⟸   ENSRNOT00000079261
Ensembl Acc Id: ENSRNOP00000011003   ⟸   ENSRNOT00000011003
RefSeq Acc Id: XP_038960407   ⟸   XM_039104479
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960408   ⟸   XM_039104480
- Peptide Label: isoform X2
Protein Domains
C-type lectin   Fibronectin type-II

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M495-F1-model_v2 AlphaFold F1M495 1-1461 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309777 AgrOrtholog
BioCyc Gene G2FUF-49618 BioCyc
Ensembl Genes ENSRNOG00000008129 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011003.7 UniProtKB/TrEMBL
Gene3D-CATH 2.10.10.10 UniProtKB/TrEMBL
  2.80.10.50 UniProtKB/TrEMBL
  3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin UniProtKB/TrEMBL
  C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin/snaclec_domain UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  C-type_lectin_fold UniProtKB/TrEMBL
  FN_type2_col-bd UniProtKB/TrEMBL
  FN_type2_sf UniProtKB/TrEMBL
  Kringle-like UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
KEGG Report rno:295631 UniProtKB/TrEMBL
NCBI Gene 295631 ENTREZGENE
PANTHER MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/TrEMBL
  SECRETORY PHOSPHOLIPASE A2 RECEPTOR UniProtKB/TrEMBL
Pfam fn2 UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
PhenoGen Pla2r1 PhenoGen
PRINTS FNTYPEII UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  FN2_1 UniProtKB/TrEMBL
  FN2_2 UniProtKB/TrEMBL
  RICIN_B_LECTIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008129 RatGTEx
SMART CLECT UniProtKB/TrEMBL
  FN2 UniProtKB/TrEMBL
  RICIN UniProtKB/TrEMBL
Superfamily-SCOP C-type_lectin_fold UniProtKB/TrEMBL
  Kringle-like UniProtKB/TrEMBL
  RicinB_like UniProtKB/TrEMBL
UniProt A6JF83 ENTREZGENE, UniProtKB/TrEMBL
  F1M495 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pla2r1  phospholipase A2 receptor 1  LOC102553743  secretory phospholipase A2 receptor-like  Data merged from RGD:7610045 737654 PROVISIONAL
2013-12-18 LOC102553743  secretory phospholipase A2 receptor-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Pla2r1  phospholipase A2 receptor 1   Pla2r1_predicted  phospholipase A2 receptor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2007-01-31 Pla2r1_predicted  phospholipase A2 receptor 1 (predicted)  Mrc2_predicted  mannose receptor, C type 2 (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-01-12 Mrc2_predicted  mannose receptor, C type 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED