Kdm6b (lysine demethylase 6B) - Rat Genome Database

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Gene: Kdm6b (lysine demethylase 6B) Rattus norvegicus
Analyze
Symbol: Kdm6b
Name: lysine demethylase 6B
RGD ID: 1307629
Description: Enables chromatin binding activity. Involved in several processes, including hippocampus development; response to activity; and response to fungicide. Predicted to be located in nucleus. Predicted to be part of MLL3/4 complex. Human ortholog(s) of this gene implicated in Stolerman neurodevelopmental syndrome. Orthologous to human KDM6B (lysine demethylase 6B); PARTICIPATES IN histone modification pathway; INTERACTS WITH 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Jmjd3; jumonji domain containing 3; jumonji domain-containing 3; LOC363630; lysine (K)-specific demethylase 6B; lysine-specific demethylase 6B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,619,520 - 54,641,014 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1054,619,544 - 54,629,610 (-)EnsemblGRCr8
mRatBN7.21054,120,716 - 54,142,212 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,121,848 - 54,130,794 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1058,782,470 - 58,803,961 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,271,086 - 58,292,578 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,779,180 - 53,800,683 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,000,494 - 56,009,582 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,001,799 - 56,008,885 (-)Ensemblrn6Rnor6.0
Rnor_5.01055,743,701 - 55,751,368 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41056,194,131 - 56,202,139 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1053,278,345 - 53,286,159 (-)NCBICelera
RGSC_v3.11056,207,737 - 56,221,527 (-)NCBI
Cytogenetic Map10q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP,ISO)
2,2'-Methylenebis(4-methyl-6-tert-butylphenol)  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
berberine  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP)
buta-1,3-diene  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
camptothecin  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glycidol  (EXP)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
isoprenaline  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dichloride  (EXP)
methamphetamine  (EXP,ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methimazole  (EXP)
methylisothiazolinone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel dichloride  (ISO)
niclosamide  (ISO)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
propiconazole  (EXP,ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
theophylline  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
MLL3/4 complex  (IBA)
nucleoplasm  (IEA)
nucleus  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Coexpression of nuclear receptors and histone methylation modifying genes in the testis: implications for endocrine disruptor modes of action. Anderson AM, etal., PLoS One. 2012;7(4):e34158. doi: 10.1371/journal.pone.0034158. Epub 2012 Apr 4.
2. Histone lysine methylation dynamics: establishment, regulation, and biological impact. Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Epigenetic induction of the Ink4a/Arf locus prevents Schwann cell overproliferation during nerve regeneration and after tumorigenic challenge. Gomez-Sanchez JA, etal., Brain. 2013 Jul;136(Pt 7):2262-78. doi: 10.1093/brain/awt130. Epub 2013 Jun 6.
5. High-intensity training induces EIB in rats through neuron transdifferentiation of adrenal medulla chromaffin cells. He R, etal., Am J Physiol Lung Cell Mol Physiol. 2013 May 1;304(9):L602-12. doi: 10.1152/ajplung.00406.2012. Epub 2013 Feb 15.
6. Ezh1 and Ezh2 differentially regulate PSD-95 gene transcription in developing hippocampal neurons. Henriquez B, etal., Mol Cell Neurosci. 2013 Nov;57:130-43. doi: 10.1016/j.mcn.2013.07.012. Epub 2013 Aug 8.
7. Molecular mechanism of Jmjd3-mediated interleukin-6 gene regulation in endothelial cells underlying spinal cord injury. Lee K, etal., J Neurochem. 2012 Jul;122(2):272-82. doi: 10.1111/j.1471-4159.2012.07786.x. Epub 2012 Jun 6.
8. Jmjd3-Mediated H3K27me3 Dynamics Orchestrate Brown Fat Development and Regulate White Fat Plasticity. Pan D, etal., Dev Cell. 2015 Dec 7;35(5):568-583. doi: 10.1016/j.devcel.2015.11.002. Epub 2015 Nov 25.
9. Histone demethylase KDM6B promotes epithelial-mesenchymal transition. Ramadoss S, etal., J Biol Chem. 2012 Dec 28;287(53):44508-17. doi: 10.1074/jbc.M112.424903. Epub 2012 Nov 14.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Expression and significance of histone H3K27 demethylases in renal cell carcinoma. Shen Y, etal., BMC Cancer. 2012 Oct 12;12:470. doi: 10.1186/1471-2407-12-470.
Additional References at PubMed
PMID:17825402   PMID:17928865   PMID:18716661   PMID:19710508   PMID:20808772   PMID:21095589   PMID:23856522   PMID:24097101   PMID:27010597   PMID:27425890   PMID:27815838   PMID:28262558  
PMID:29753027   PMID:29982434   PMID:32084453   PMID:32258110   PMID:33391480   PMID:33456568   PMID:33479437   PMID:34297635   PMID:34948220   PMID:37287407   PMID:37445785   PMID:37653221  


Genomics

Comparative Map Data
Kdm6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,619,520 - 54,641,014 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1054,619,544 - 54,629,610 (-)EnsemblGRCr8
mRatBN7.21054,120,716 - 54,142,212 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,121,848 - 54,130,794 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1058,782,470 - 58,803,961 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,271,086 - 58,292,578 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,779,180 - 53,800,683 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,000,494 - 56,009,582 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,001,799 - 56,008,885 (-)Ensemblrn6Rnor6.0
Rnor_5.01055,743,701 - 55,751,368 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41056,194,131 - 56,202,139 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1053,278,345 - 53,286,159 (-)NCBICelera
RGSC_v3.11056,207,737 - 56,221,527 (-)NCBI
Cytogenetic Map10q24NCBI
KDM6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,834,217 - 7,854,796 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,834,193 - 7,854,796 (+)Ensemblhg38GRCh38
GRCh37177,737,535 - 7,758,114 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,683,960 - 7,698,843 (+)NCBIBuild 36Build 36hg18NCBI36
Celera177,771,102 - 7,785,939 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,637,994 - 7,652,831 (+)NCBIHuRef
CHM1_1177,752,263 - 7,767,093 (+)NCBICHM1_1
T2T-CHM13v2.0177,738,322 - 7,760,122 (+)NCBIT2T-CHM13v2.0
Kdm6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,289,334 - 69,311,188 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,289,334 - 69,304,501 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381169,398,508 - 69,420,367 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,398,508 - 69,413,675 (-)Ensemblmm10GRCm38
MGSCv371169,212,010 - 69,227,177 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361169,214,703 - 69,229,870 (-)NCBIMGSCv36mm8
Celera1176,352,998 - 76,368,171 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.6NCBI
Kdm6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,086,204 - 9,094,404 (-)Ensembl
ChiLan1.0NW_0049554679,085,239 - 9,106,658 (-)NCBIChiLan1.0ChiLan1.0
KDM6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,431,013 - 15,452,821 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,397,061 - 17,418,850 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,878,783 - 7,889,372 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,858,734 - 7,876,220 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,866,973 - 7,874,937 (+)EnsemblpanPan2panpan1.1
KDM6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,689,000 - 32,711,026 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,696,211 - 32,710,666 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha532,827,236 - 32,848,755 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0532,792,977 - 32,814,492 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,792,975 - 32,814,114 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,760,822 - 32,782,338 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,716,996 - 32,738,518 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,895,969 - 32,917,506 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Kdm6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,603,112 - 47,624,715 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,089,544 - 1,097,595 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,077,318 - 1,099,082 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDM6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,098,964 - 53,108,214 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11253,087,072 - 53,108,949 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,452,697 - 55,475,051 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KDM6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,221,769 - 7,241,230 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,232,426 - 7,241,040 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605914,166,684 - 14,188,438 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdm6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,425,816 - 10,433,806 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478610,413,670 - 10,435,118 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Kdm6b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1949,011,071 - 49,032,104 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Kdm6b
74 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:78
Interacting mature miRNAs:87
Transcripts:ENSRNOT00000067677
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103589345164140567Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105107189796071897Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103621155669161158Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103179628176796281Rat
152025227Bw195Body weight QTL 1955.73body mass (VT:0001259)104748901769161158Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101577675460776754Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102702353598502431Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)102744378772443787Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105216243375582749Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)103550938391417879Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
1578762Toxo1Toxoplasma gondii resistance QTL 1brain integrity trait (VT:0010579)percentage of study population displaying Toxoplasma gondii brain cysts at a point in time (CMO:0002028)105269900459876693Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)101993920764939207Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)101803578263035782Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105429633699451733Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104183127886831278Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105046480295464802Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104552916496099749Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104493935989939359Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101866841963668419Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102183375861843633Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105086028895860288Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102895035373950353Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103589326364653589Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102980091064653589Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102744378772443787Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14282327487823274Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104493935989939359Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104282327487823274Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105429622767476781Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102293137391127454Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)104949549294495492Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
1354585Eae18aExperimental allergic encephalomyelitis QTL 18a7.50.0004nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)105429622758944345Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)102466212373695339Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102702353561843633Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103550938380509383Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)102980091091417879Rat
2298495Eae23Experimental allergic encephalomyelitis QTL 2316.93nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)101617552561175525Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)102011061465110614Rat
2289985Bp305Blood pressure QTL 305arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102907697874076978Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)102758722696099902Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101803578263035782Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104360879388608793Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)102744378772443787Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104994371094943710Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103112911376129113Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104493935989939359Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104786912992869129Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105060467795604677Rat
12880050Am10Aortic mass QTL 100.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)103950348784503487Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)103550938388177745Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)102011061465110614Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102702353599451848Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  PQ586284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067677   ⟹   ENSRNOP00000060247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1054,619,544 - 54,629,610 (-)Ensembl
mRatBN7.2 Ensembl1054,121,848 - 54,130,794 (-)Ensembl
Rnor_6.0 Ensembl1056,001,799 - 56,008,885 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116399   ⟹   ENSRNOP00000091469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1054,619,544 - 54,629,610 (-)Ensembl
mRatBN7.2 Ensembl1054,121,848 - 54,130,794 (-)Ensembl
RefSeq Acc Id: NM_001108829   ⟹   NP_001102299
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,014 (-)NCBI
mRatBN7.21054,120,718 - 54,142,212 (-)NCBI
Rnor_6.01056,001,626 - 56,009,582 (-)NCBI
Rnor_5.01055,743,701 - 55,751,368 (-)NCBI
RGSC_v3.41056,194,131 - 56,202,139 (-)RGD
Celera1053,278,345 - 53,286,159 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401950   ⟹   NP_001388879
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,014 (-)NCBI
mRatBN7.21054,120,718 - 54,142,212 (-)NCBI
RefSeq Acc Id: XM_039086469   ⟹   XP_038942397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,004 (-)NCBI
mRatBN7.21054,120,716 - 54,142,212 (-)NCBI
RefSeq Acc Id: XM_039086470   ⟹   XP_038942398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,636,888 (-)NCBI
mRatBN7.21054,120,716 - 54,138,075 (-)NCBI
RefSeq Acc Id: XM_039086471   ⟹   XP_038942399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,635,670 (-)NCBI
mRatBN7.21054,120,716 - 54,137,352 (-)NCBI
RefSeq Acc Id: XM_039086472   ⟹   XP_038942400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,635,603 (-)NCBI
mRatBN7.21054,120,716 - 54,136,810 (-)NCBI
RefSeq Acc Id: XM_039086473   ⟹   XP_038942401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,630,626 (-)NCBI
mRatBN7.21054,120,716 - 54,131,830 (-)NCBI
RefSeq Acc Id: XM_039086474   ⟹   XP_038942402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,630,984 (-)NCBI
mRatBN7.21054,120,716 - 54,132,184 (-)NCBI
RefSeq Acc Id: XM_039086475   ⟹   XP_038942403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,632,186 (-)NCBI
mRatBN7.21054,120,716 - 54,133,392 (-)NCBI
RefSeq Acc Id: XM_039086476   ⟹   XP_038942404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,632,186 (-)NCBI
mRatBN7.21054,120,716 - 54,133,392 (-)NCBI
RefSeq Acc Id: XM_039086477   ⟹   XP_038942405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,632,618 (-)NCBI
mRatBN7.21054,120,716 - 54,133,824 (-)NCBI
RefSeq Acc Id: XM_039086478   ⟹   XP_038942406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,004 (-)NCBI
mRatBN7.21054,120,716 - 54,142,212 (-)NCBI
RefSeq Acc Id: XM_039086479   ⟹   XP_038942407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,636,888 (-)NCBI
mRatBN7.21054,120,716 - 54,138,075 (-)NCBI
RefSeq Acc Id: XM_039086480   ⟹   XP_038942408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,635,665 (-)NCBI
mRatBN7.21054,120,716 - 54,136,863 (-)NCBI
RefSeq Acc Id: XM_039086481   ⟹   XP_038942409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,635,603 (-)NCBI
mRatBN7.21054,120,716 - 54,136,810 (-)NCBI
RefSeq Acc Id: XM_039086483   ⟹   XP_038942411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,004 (-)NCBI
mRatBN7.21054,120,716 - 54,142,212 (-)NCBI
RefSeq Acc Id: XM_063269516   ⟹   XP_063125586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,636,932 (-)NCBI
RefSeq Acc Id: XM_063269517   ⟹   XP_063125587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,630,984 (-)NCBI
RefSeq Acc Id: XM_063269518   ⟹   XP_063125588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,004 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102299 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942397 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942398 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942399 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942400 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942401 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942402 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942403 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942404 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942405 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942406 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942408 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942409 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942411 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125586 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125587 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125588 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABU49313 (Get FASTA)   NCBI Sequence Viewer  
  ABU49314 (Get FASTA)   NCBI Sequence Viewer  
  ABU49315 (Get FASTA)   NCBI Sequence Viewer  
  ABU49316 (Get FASTA)   NCBI Sequence Viewer  
  ABU49317 (Get FASTA)   NCBI Sequence Viewer  
  ABU49318 (Get FASTA)   NCBI Sequence Viewer  
  ABU49319 (Get FASTA)   NCBI Sequence Viewer  
  ABU49320 (Get FASTA)   NCBI Sequence Viewer  
  ABU49321 (Get FASTA)   NCBI Sequence Viewer  
  ABU49322 (Get FASTA)   NCBI Sequence Viewer  
  ABU49323 (Get FASTA)   NCBI Sequence Viewer  
  EDM04866 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060247
  ENSRNOP00000060247.4
  ENSRNOP00000091469
  ENSRNOP00000091469.1
RefSeq Acc Id: NP_001102299   ⟸   NM_001108829
- Peptide Label: isoform 1
- UniProtKB: G3V9U4 (UniProtKB/TrEMBL),   A6HFR1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060247   ⟸   ENSRNOT00000067677
RefSeq Acc Id: XP_038942406   ⟸   XM_039086478
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942411   ⟸   XM_039086483
- Peptide Label: isoform X3
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942397   ⟸   XM_039086469
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942407   ⟸   XM_039086479
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942398   ⟸   XM_039086470
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942399   ⟸   XM_039086471
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942408   ⟸   XM_039086480
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942409   ⟸   XM_039086481
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942400   ⟸   XM_039086472
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942405   ⟸   XM_039086477
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942404   ⟸   XM_039086476
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942403   ⟸   XM_039086475
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942402   ⟸   XM_039086474
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942401   ⟸   XM_039086473
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091469   ⟸   ENSRNOT00000116399
RefSeq Acc Id: NP_001388879   ⟸   NM_001401950
- Peptide Label: isoform 2
- UniProtKB: A0A8I6AFH2 (UniProtKB/TrEMBL),   A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125588   ⟸   XM_063269518
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AFH2 (UniProtKB/TrEMBL),   A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125586   ⟸   XM_063269516
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AFH2 (UniProtKB/TrEMBL),   A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125587   ⟸   XM_063269517
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AFH2 (UniProtKB/TrEMBL),   A6HFR1 (UniProtKB/TrEMBL)
Protein Domains
JmjC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9U4-F1-model_v2 AlphaFold G3V9U4 1-1356 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307629 AgrOrtholog
BioCyc Gene G2FUF-24550 BioCyc
Ensembl Genes ENSRNOG00000037613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067677 ENTREZGENE
  ENSRNOT00000067677.5 UniProtKB/TrEMBL
  ENSRNOT00000116399 ENTREZGENE
  ENSRNOT00000116399.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1370 UniProtKB/TrEMBL
  1.25.40.10 UniProtKB/TrEMBL
  2.10.110.20 UniProtKB/TrEMBL
  Cupin UniProtKB/TrEMBL
InterPro Corepressor-Demethylase UniProtKB/TrEMBL
  JmjC_dom UniProtKB/TrEMBL
  KDM6_GATAL_sf UniProtKB/TrEMBL
  KDM6A_B-like_C-hel UniProtKB/TrEMBL
  KDM6A_B-like_GATAL UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report rno:363630 UniProtKB/TrEMBL
NCBI Gene 363630 ENTREZGENE
PANTHER LYSINE-SPECIFIC DEMETHYLASE UniProtKB/TrEMBL
  PTHR14017:SF5 UniProtKB/TrEMBL
Pfam JmjC UniProtKB/TrEMBL
  KDM6_C-hel UniProtKB/TrEMBL
  KDM6_GATAL UniProtKB/TrEMBL
PhenoGen Kdm6b PhenoGen
PROSITE JMJC UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037613 RatGTEx
SMART JmjC UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A8I6AFH2 ENTREZGENE, UniProtKB/TrEMBL
  A6HFR1 ENTREZGENE, UniProtKB/TrEMBL
  G3V9U4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Kdm6b  lysine demethylase 6B  Kdm6b  lysine (K)-specific demethylase 6B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-03-09 Kdm6b  lysine (K)-specific demethylase 6B  Jmjd3  jumonji domain containing 3   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Jmjd3  jumonji domain containing 3   Jmjd3_predicted  jumonji domain containing 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Jmjd3_predicted  jumonji domain containing 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED