Pfkp (phosphofructokinase, platelet) - Rat Genome Database

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Gene: Pfkp (phosphofructokinase, platelet) Rattus norvegicus
Analyze
Symbol: Pfkp
Name: phosphofructokinase, platelet
RGD ID: 61893
Description: Enables 6-phosphofructokinase activity; anion binding activity; and identical protein binding activity. Involved in fructose 1,6-bisphosphate metabolic process; fructose 6-phosphate metabolic process; and glycolytic process. Predicted to be located in cytosol. Predicted to be part of 6-phosphofructokinase complex. Predicted to be active in membrane. Orthologous to human PFKP (phosphofructokinase, platelet); PARTICIPATES IN fructose and mannose metabolic pathway; galactose metabolic pathway; gluconeogenesis pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6-phosphofructo-1-kinase, C-type; 6-phosphofructokinase type C; ATP-dependent 6-phosphofructokinase, platelet type; ATP-PFK; MGC105718; PFK-C; PFK-P; pfkc; phosphofructo-1-kinase isozyme C; phosphofructokinase 1; phosphofructokinase C-type subunit; phosphohexokinase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81768,639,749 - 68,704,055 (+)NCBIGRCr8
mRatBN7.21763,729,743 - 63,794,026 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1763,729,780 - 63,794,018 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1767,232,016 - 67,296,305 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01771,060,799 - 71,125,092 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01765,083,081 - 65,147,319 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01768,510,765 - 68,574,387 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1768,511,064 - 68,559,471 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01770,227,547 - 70,290,384 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41774,760,912 - 74,823,046 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11774,771,768 - 74,833,862 (+)NCBI
Celera1763,327,855 - 63,392,034 (+)NCBICelera
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfkpRatschizophrenia  ISOPFKP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
PfkpRatsyndromic microphthalmia 5  ISOPFKP (Homo sapiens)8554872ClinVar Annotator: match by term: Anophthalmia-microphthalmia syndromeClinVarPMID:26893459
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfkpRatExperimental Liver Cirrhosis  ISOPFKP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136

1 to 20 of 224 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
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Source
Original Reference(s)
PfkpRat(2,4,5-trichlorophenoxy)acetic acid decreases expressionISOPfkp (Mus musculus)64804642 more ...CTDPMID:18579281
PfkpRat1,1-dichloroethene increases expressionISOPfkp (Mus musculus)6480464vinylidene chloride results in increased expression of PFKP mRNACTDPMID:26682919
PfkpRat1,2-dichloroethane decreases expressionISOPfkp (Mus musculus)6480464ethylene dichloride results in decreased expression of PFKP mRNACTDPMID:28960355
PfkpRat1,2-dimethylhydrazine affects expressionISOPfkp (Mus musculus)64804641 and 2-Dimethylhydrazine affects the expression of PFKP mRNACTDPMID:22206623
PfkpRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of PFKP mRNACTDPMID:25380136
PfkpRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of PFKP mRNACTDPMID:12075121
PfkpRat17beta-estradiol increases expressionISOPFKP (Homo sapiens)6480464Estradiol results in increased expression of PFKP mRNACTDPMID:31614463
PfkpRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOPfkp (Mus musculus)6480464[2 more ...CTDPMID:25510870
PfkpRat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOPfkp (Mus musculus)64804642 more ...CTDPMID:30294300
PfkpRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOPFKP (Homo sapiens)64804642 more ...CTDPMID:31675489
PfkpRat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOPfkp (Mus musculus)6480464[2 more ...CTDPMID:25510870
PfkpRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOPfkp (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to PFKP gene]CTDPMID:20819909
PfkpRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOPFKP (Homo sapiens)6480464[Endosulfan co-treated with Tetrachlorodibenzodioxin] results in increased expression of PFKP mRNA and [Endosulfan co-treated with Tetrachlorodibenzodioxin] results in increased expression of PFKP proteinCTDPMID:26159488 and PMID:36753968
PfkpRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of PFKP mRNACTDPMID:20959002
PfkpRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOPFKP (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of PFKP mRNA and Tetrachlorodibenzodioxin results in increased expression of PFKP proteinCTDPMID:20106945 more ...
PfkpRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPfkp (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PFKP mRNACTDPMID:21570461
PfkpRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPfkp (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of PFKP mRNACTDPMID:19770486
PfkpRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOPfkp (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of PFKP mRNACTDPMID:20819909
PfkpRat2,4,6-tribromophenol decreases expressionISOPFKP (Homo sapiens)64804642 more ...CTDPMID:31675489
PfkpRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOPfkp (Mus musculus)64804642 more ...CTDPMID:38648751

1 to 20 of 224 rows

Biological Process
1 to 13 of 13 rows

  
Object Symbol
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Original Reference(s)
PfkpRatcanonical glycolysis involved_inIBAMGI:97548 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfkpRatcellular response to leukemia inhibitory factor acts_upstream_of_or_withinISOPfkp (Mus musculus)1624291 PMID:20439489RGDPMID:20439489
PfkpRatfructose 1,6-bisphosphate metabolic process  IDA 2302736 RGD 
PfkpRatfructose 1,6-bisphosphate metabolic process involved_inIBAFB:FBgn0003071 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfkpRatfructose 6-phosphate metabolic process  IDA 2302736 RGD 
PfkpRatfructose 6-phosphate metabolic process involved_inIBAFB:FBgn0003071 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfkpRatfructose 6-phosphate metabolic process involved_inIEAInterPro:IPR0229531600115GO_REF:0000002InterProGO_REF:0000002
PfkpRatglycolytic process  IDA 2302736 RGD 
PfkpRatglycolytic process involved_inIEAUniRule:UR0001662591600115GO_REF:0000104UniProtGO_REF:0000104
PfkpRatglycolytic process involved_inIEAInterPro:IPR000023 more ...1600115GO_REF:0000002InterProGO_REF:0000002
PfkpRatglycolytic process involved_inIEAUniProtKB-KW:KW-03241600115GO_REF:0000043UniProtGO_REF:0000043
PfkpRatglycolytic process involved_inIEAUniPathway:UPA001091600115GO_REF:0000041UniProtGO_REF:0000041
PfkpRatglycolytic process through fructose-6-phosphate involved_inIEAGO:00038721600115GO_REF:0000108GOCGO_REF:0000108
1 to 13 of 13 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfkpRat6-phosphofructokinase complex part_ofIBACGD:CAL0000186427 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfkpRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
PfkpRatcytoplasm located_inISOPFKP (Homo sapiens)1624291 PMID:25468996RGDPMID:25468996
PfkpRatcytoplasm located_inIEAInterPro:IPR0091611600115GO_REF:0000002InterProGO_REF:0000002
PfkpRatcytoplasm located_inIEAUniRule:UR0001662591600115GO_REF:0000104UniProtGO_REF:0000104
PfkpRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
PfkpRatcytosol located_inISOPfkp (Mus musculus)1624291 PMID:2521854RGDPMID:2521854
PfkpRatmembrane is_active_inIBAPANTHER:PTN000344223 and UniProtKB:P082371600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
1 to 20 of 22 rows

  
Object Symbol
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Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
PfkpRat6-phosphofructokinase activity  IDA 2302736 RGD 
PfkpRat6-phosphofructokinase activity enablesIBACGD:CAL0000186427 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfkpRat6-phosphofructokinase activity enablesIEAUniRule:UR0001662591600115GO_REF:0000104UniProtGO_REF:0000104
PfkpRat6-phosphofructokinase activity enablesIEAInterPro:IPR000023 more ...1600115GO_REF:0000002InterProGO_REF:0000002
PfkpRat6-phosphofructokinase activity enablesISSUniProtKB:P478591600115GO_REF:0000024UniProtGO_REF:0000024
PfkpRat6-phosphofructokinase activity enablesIEAEC:2.7.1.111600115GO_REF:0000003UniProtGO_REF:0000003
PfkpRat6-phosphofructokinase activity enablesIEARHEA:161091600115GO_REF:0000116RHEAGO_REF:0000116
PfkpRat6-phosphofructokinase activity  IDA 61692 RGD 
PfkpRatATP binding  IDA 2302736 RGD 
PfkpRatATP binding enablesIEAInterPro:IPR0091611600115GO_REF:0000002InterProGO_REF:0000002
PfkpRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
PfkpRatcatalytic activity enablesIEAUniProtKB-KW:KW-00211600115GO_REF:0000043UniProtGO_REF:0000043
PfkpRatfructose-6-phosphate binding  IDA 2302736 RGD 
PfkpRatfructose-6-phosphate binding enablesIBAPANTHER:PTN000344216 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfkpRatidentical protein binding  IPIPfkp (Rattus norvegicus)2302736homotetramerizationRGD 
PfkpRatidentical protein binding enablesISOPFKP (Homo sapiens) and UniProtKB:Q01813-11624291UniProtKB:Q01813-1 and PMID:25985179RGDPMID:25985179
PfkpRatkinase activity enablesIEAUniProtKB-KW:KW-04181600115GO_REF:0000043UniProtGO_REF:0000043
PfkpRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
PfkpRatnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
PfkpRatprotein binding enablesISOPFKP (Homo sapiens)1624291UniProtKB:P08237 more ...RGDPMID:28514442 more ...
1 to 20 of 22 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfkpRatglycolysis pathway   TAS 2302736 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfkpRatfructose and mannose metabolic pathway  IEA 6907045 KEGGrno:00051
PfkpRatgalactose metabolic pathway  IEA 6907045 KEGGrno:00052
PfkpRatgluconeogenesis pathway   IEA 6907045 KEGGrno:00010
PfkpRatglycolysis pathway   IEA 6907045 KEGGrno:00010
PfkpRatglycolysis/gluconeogenesis pathway  IEA 6907045 KEGGrno:00010
PfkpRatpentose phosphate pathway   IEA 6907045 KEGGrno:00030

1 to 11 of 11 rows
#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Structure, distribution, and functional expression of the phosphofructokinase C isozyme. Gekakis N, etal., J Biol Chem 1994 Feb 4;269(5):3348-55.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Response of rat cerebral glycolytic enzymes to hyperammonemic states. Ratnakumari L and Murthy CR, Neurosci Lett. 1993 Oct 14;161(1):37-40.
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Isoenzymes of phosphofructokinase in the rat. Demonstration of the three non-identical subunits by biochemical, immunochemical and kinetic studies. Vora S, etal., Biochem J. 1985 Jul 15;229(2):333-41.
11. Identification of cell-specific messenger ribonucleic acids in oxytocinergic and vasopressinergic magnocellular neurons in rat supraoptic nucleus by single-cell differential hybridization. Yamashita M, etal., Endocrinology 2002 Nov;143(11):4464-76.
1 to 11 of 11 rows
PMID:2521854   PMID:2960695   PMID:6444721   PMID:6451249   PMID:7825568   PMID:12477932   PMID:14760703   PMID:15489334   PMID:19946888   PMID:20439489   PMID:20458337   PMID:21630459  
PMID:22871113   PMID:23209302   PMID:23979707   PMID:25468996   PMID:25985179   PMID:29476059   PMID:32357304  



Pfkp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81768,639,749 - 68,704,055 (+)NCBIGRCr8
mRatBN7.21763,729,743 - 63,794,026 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1763,729,780 - 63,794,018 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1767,232,016 - 67,296,305 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01771,060,799 - 71,125,092 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01765,083,081 - 65,147,319 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01768,510,765 - 68,574,387 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1768,511,064 - 68,559,471 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01770,227,547 - 70,290,384 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41774,760,912 - 74,823,046 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11774,771,768 - 74,833,862 (+)NCBI
Celera1763,327,855 - 63,392,034 (+)NCBICelera
Cytogenetic Map17q12.1NCBI
PFKP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38103,067,548 - 3,136,805 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl103,066,333 - 3,137,718 (+)EnsemblGRCh38hg38GRCh38
GRCh37103,109,740 - 3,178,997 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36103,099,752 - 3,168,996 (+)NCBINCBI36Build 36hg18NCBI36
Build 34103,099,751 - 3,168,995NCBI
Celera103,056,125 - 3,124,845 (+)NCBICelera
Cytogenetic Map10p15.2NCBI
HuRef103,045,950 - 3,114,052 (+)NCBIHuRef
CHM1_1103,109,390 - 3,178,958 (+)NCBICHM1_1
T2T-CHM13v2.0103,068,649 - 3,138,082 (+)NCBIT2T-CHM13v2.0
Pfkp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,629,910 - 6,699,096 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,629,804 - 6,698,813 (-)EnsemblGRCm39 Ensembl
GRCm38136,579,874 - 6,649,060 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,579,768 - 6,648,777 (-)EnsemblGRCm38mm10GRCm38
MGSCv37136,579,120 - 6,647,970 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,579,120 - 6,647,970 (-)NCBIMGSCv36mm8
Celera136,529,169 - 6,596,776 (-)NCBICelera
Cytogenetic Map13A1NCBI
cM Map133.25NCBI
Pfkp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542128,043,271 - 28,086,796 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542128,042,973 - 28,098,358 (-)NCBIChiLan1.0ChiLan1.0
PFKP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2815,557,973 - 15,629,863 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11015,563,326 - 15,635,185 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0103,062,844 - 3,134,955 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1103,080,248 - 3,148,018 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl103,080,242 - 3,244,790 (+)Ensemblpanpan1.1panPan2
PFKP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1232,220,876 - 32,254,354 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl232,220,878 - 32,260,911 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha229,249,439 - 29,293,199 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0232,603,570 - 32,647,286 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl232,603,572 - 32,647,341 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1229,690,270 - 29,734,042 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0230,527,797 - 30,571,404 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0231,255,597 - 31,299,277 (-)NCBIUU_Cfam_GSD_1.0
Pfkp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934434,940,588 - 34,996,015 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648411,103,142 - 11,161,344 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648411,105,814 - 11,161,238 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PFKP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1067,022,655 - 67,082,449 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11067,022,652 - 67,082,336 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21073,581,212 - 73,608,200 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PFKP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.193,130,701 - 3,191,590 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl93,130,566 - 3,191,576 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660518,281,360 - 8,342,269 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pfkp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247757,324,662 - 7,390,271 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247757,325,032 - 7,390,200 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Pfkp
587 total Variants

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:129
Interacting mature miRNAs:137
Transcripts:ENSRNOT00000023252
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 43 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)175724672370156904Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat

1 to 10 of 43 rows
RH127612  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21763,793,692 - 63,793,903 (-)MAPPERmRatBN7.2
Rnor_6.01768,510,879 - 68,511,089NCBIRnor6.0
Rnor_5.01770,227,661 - 70,227,871UniSTSRnor5.0
RGSC_v3.41774,822,722 - 74,822,932UniSTSRGSC3.4
Celera1763,391,710 - 63,391,920UniSTS
Cytogenetic Map17q12.2UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000023252   ⟹   ENSRNOP00000023252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1763,729,780 - 63,794,018 (+)Ensembl
Rnor_6.0 Ensembl1768,511,064 - 68,559,471 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094864   ⟹   ENSRNOP00000084974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1763,729,780 - 63,794,018 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108657   ⟹   ENSRNOP00000097741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1763,729,780 - 63,794,018 (+)Ensembl
RefSeq Acc Id: NM_206847   ⟹   NP_996729
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81768,639,813 - 68,704,055 (+)NCBI
mRatBN7.21763,729,776 - 63,794,026 (+)NCBI
Rnor_6.01768,510,765 - 68,574,387 (-)NCBI
Rnor_5.01770,227,547 - 70,290,384 (-)NCBI
RGSC_v3.41774,760,912 - 74,823,046 (+)RGD
Celera1763,327,855 - 63,392,034 (+)RGD
Sequence:
RefSeq Acc Id: XM_039096037   ⟹   XP_038951965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81768,639,749 - 68,704,050 (+)NCBI
mRatBN7.21763,729,747 - 63,794,021 (+)NCBI
RefSeq Acc Id: XM_063276718   ⟹   XP_063132788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81768,639,749 - 68,704,050 (+)NCBI
RefSeq Acc Id: NP_996729   ⟸   NM_206847
- UniProtKB: Q5HZX8 (UniProtKB/Swiss-Prot),   P47860 (UniProtKB/Swiss-Prot),   C7C5T2 (UniProtKB/TrEMBL),   A0A0A0MXY5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023252   ⟸   ENSRNOT00000023252
RefSeq Acc Id: XP_038951965   ⟸   XM_039096037
- Peptide Label: isoform X1
- UniProtKB: A0A8I6B663 (UniProtKB/TrEMBL),   A0A8I5ZYA2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097741   ⟸   ENSRNOT00000108657
Ensembl Acc Id: ENSRNOP00000084974   ⟸   ENSRNOT00000094864
Phosphofructokinase

Name Modeler Protein Id AA Range Protein Structure
AF-P47860-F1-model_v2 AlphaFold P47860 1-788 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 41 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-8868 BioCyc
BioCyc Pathway ANAGLYCOLYSIS-PWY [glycolysis III (from glucose)] BioCyc
BioCyc Pathway Image ANAGLYCOLYSIS-PWY BioCyc
Ensembl Genes ENSRNOG00000017163 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023252 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000023252.8 UniProtKB/Swiss-Prot
  ENSRNOT00000094864.1 UniProtKB/TrEMBL
  ENSRNOT00000108657 ENTREZGENE
  ENSRNOT00000108657.1 UniProtKB/TrEMBL
  ENSRNOT00000170052 ENTREZGENE
Gene3D-CATH 3.40.50.450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.460 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7312293 IMAGE-MGC_LOAD
InterPro 6-Pfructokinase_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP_PFK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PFK_vert-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phosphofructokinase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phosphofructokinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PKF_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:60416 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105718 IMAGE-MGC_LOAD
NCBI Gene 60416 ENTREZGENE
PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE, PLATELET TYPE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHOSPHOFRUCTOKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PFK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pfkp PhenoGen
PIRSF ATP_PFK_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS PHFRCTKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PHOSPHOFRUCTOKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017163 RatGTEx
Superfamily-SCOP SSF53784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MXY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B663 ENTREZGENE, UniProtKB/TrEMBL
  A6JLM4_RAT UniProtKB/TrEMBL
  A6JLM5_RAT UniProtKB/TrEMBL
  A6JLM6_RAT UniProtKB/TrEMBL
  C7C5T2 ENTREZGENE, UniProtKB/TrEMBL
  P47860 ENTREZGENE, UniProtKB/Swiss-Prot
  Q5HZX8 ENTREZGENE
1 to 40 of 41 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Pfkp  phosphofructokinase, platelet    phosphofructokinase, platelet   Name updated 1299863 APPROVED
2002-06-10 Pfkp  phosphofructokinase, platelet       Name updated 70584 APPROVED

Note Type Note Reference
gene_expression enriched in brain 61692
gene_expression preferentially expressed in oxytocin-expressing magnocellular neurons (MCNs) 628363
gene_expression expressed mainly in the brain and in neuroendocrine tissues 628363
gene_function catalyzes the ATP-dependent conversion of fructose 6-phosphate to fructose 1, 6-bisphosphate 628363
gene_protein 765 amino acids 61692