Cd59b (CD59b molecule) - Rat Genome Database

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Gene: Cd59b (CD59b molecule) Rattus norvegicus
Analyze
Symbol: Cd59b
Name: CD59b molecule
RGD ID: 2311
Description: Enables complement binding activity. Involved in several processes, including negative regulation of activation of membrane attack complex; negative regulation of complement-dependent cytotoxicity; and positive regulation of T cell proliferation. Located in compact myelin; extracellular space; and sarcolemma. Used to study anterior uveitis; colorectal carcinoma; glomerulonephritis; nephrosis; and neuromyelitis optica. Biomarker of acute necrotizing pancreatitis; diabetic retinopathy; and myocardial infarction. Human ortholog(s) of this gene implicated in colorectal carcinoma and ovarian cancer. Orthologous to human CD59 (CD59 molecule (CD59 blood group)); PARTICIPATES IN coagulation cascade pathway; complement system pathway; INTERACTS WITH (+)-schisandrin B; 1,3-Propane sultone; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Cb59b molecule; Cd59; CD59 antigen; CD59 glycoprotein; CD59 molecule, complement regulatory protein; Cd59a; CD59b moleucle, complement regulatory protein; MAC-inhibitory protein; MAC-IP; MACIF; MACIP; membrane attack complex inhibition factor; protectin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: Cd59em1Ask  
Genetic Models: SD-Cd59em1Ask-/-
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83110,914,008 - 110,932,489 (+)NCBIGRCr8
mRatBN7.2390,459,085 - 90,477,571 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,459,162 - 90,478,847 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx393,952,281 - 93,970,470 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03102,551,356 - 102,569,545 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03100,381,722 - 100,399,939 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0394,010,481 - 94,028,660 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,010,475 - 94,028,621 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03100,650,411 - 100,668,036 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4389,243,600 - 89,245,129 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1389,318,629 - 89,333,534 (-)NCBI
Celera389,520,423 - 89,538,310 (+)NCBICelera
Cytogenetic Map3q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd59bRatacute necrotizing pancreatitis severityIEP 1600479protein:decreased expression:pancreas and acinar cellRGD 
Cd59bRatAlcoholic Liver Diseases  IEP 1600486protein:decreased expression:liverRGD 
Cd59bRatanterior uveitis  IDA 1600478mRNA and protein:increased expression:eyeRGD 
Cd59bRatbreast carcinoma disease_progressionISOCD59 (Homo sapiens)2326192 RGD 
Cd59bRatcolorectal carcinoma  IMP 1600485 RGD 
Cd59bRatdiabetic retinopathy  IEP 1600487protein:decreased expression:retinaRGD 
Cd59bRatendometrial cancer  ISOCD59 (Homo sapiens)2293548protein:increased expression:endometriumRGD 
Cd59bRatExperimental Arthritis  IDA 1600483 RGD 
Cd59bRatExperimental Autoimmune Neuritis  IEP 1600494protein:increased expression:Schwann cell (rat)RGD 
Cd59bRatFacial Nerve Injuries  IEP 1600495mRNA and protein:increased expression:facial VII nucleusRGD 
Cd59bRatglomerulonephritis  IMP 1600500 RGD 
Cd59bRatmyocardial infarction  IEP 1600501protein:decreased expression:myocardiumRGD 
Cd59bRatnephrosis  IMP 1600482 RGD 
Cd59bRatneuromyelitis optica severityIMP 13792592 RGD 
Cd59bRatovarian cancer  ISOCD59 (Homo sapiens)2306066 RGD 
Cd59bRatovarian cancer  ISOCD59 (Homo sapiens)2326189 RGD 
Cd59bRatpancreatic ductal adenocarcinoma disease_progressionISOCD59 (Homo sapiens)151660329protein:increased expression:blood (human)RGD 
Cd59bRatReperfusion Injury  IDA 1600493 RGD 
1 to 18 of 18 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd59bRatCD59 Deficiency  ISOCD59 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:1382994 more ...
Cd59bRatgenetic disease  ISOCD59 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Cd59bRatintellectual disability  ISOCD59 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd59bRatCD59 Deficiency  ISOCD59 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Cd59bRatkidney disease  ISOCD59 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:31618666
Cd59bRatSkin Manifestations  ISOCD59 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:31618666
Object Symbol
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Reference
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Original Reference(s)
Cd59bRatCD59 Deficiency  ISOCD59 (Homo sapiens)7240710 OMIM 

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd59bRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of CD59 mRNA]CTDPMID:31150632
Cd59bRat(-)-alpha-phellandrene decreases expressionISOCD59 (Homo sapiens)6480464alpha phellandrene results in decreased expression of CD59A mRNACTDPMID:25075043
Cd59bRat(S)-colchicine increases mutagenesisISOCD59 (Homo sapiens)6480464Colchicine results in increased mutagenesis of CD59 proteinCTDPMID:17045307
Cd59bRat(S)-nicotine increases expressionISOCD59 (Homo sapiens)6480464Nicotine results in increased expression of CD59 mRNACTDPMID:18247414
Cd59bRat1,3-Propane sultone decreases lipidationEXP 64804641 and 3-propane sultone results in decreased lipidation of CD59 proteinCTDPMID:27931811
Cd59bRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of CD59 mRNACTDPMID:17557909
Cd59bRat17beta-estradiol multiple interactionsISOCD59 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of CD59 mRNACTDPMID:30165855
Cd59bRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOCD59 (Homo sapiens)64804642 more ...CTDPMID:19095052
Cd59bRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCd59b (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CD59B mRNACTDPMID:21570461
Cd59bRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of CD59 mRNACTDPMID:34747641
Cd59bRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCD59 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of CD59 mRNACTDPMID:22574217
Cd59bRat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionISOCD59 (Homo sapiens)64804642 more ...CTDPMID:26705709
Cd59bRat2-amino-14,16-dimethyloctadecan-3-ol decreases expressionISOCD59 (Homo sapiens)64804642-amino-14 and 16-dimethyloctadecan-3-ol results in decreased expression of CD59 proteinCTDPMID:32044396
Cd59bRat2-hydroxypropanoic acid decreases expressionISOCD59 (Homo sapiens)6480464Lactic Acid results in decreased expression of CD59 mRNACTDPMID:30851411
Cd59bRat2-naphthylamine increases expressionISOCD59 (Homo sapiens)64804642-Naphthylamine results in increased expression of CD59 mRNACTDPMID:18247414
Cd59bRat3,4-methylenedioxymethamphetamine increases expressionISOCd59b (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of CD59B mRNACTDPMID:26251327
Cd59bRat3,4-methylenedioxymethamphetamine increases methylationISOCd59b (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased methylation of CD59B promoterCTDPMID:26251327
Cd59bRat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOCD59 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of CD59 mRNACTDPMID:28628672
Cd59bRat3-methylcholanthrene increases mutagenesisISOCD59 (Homo sapiens)6480464Methylcholanthrene results in increased mutagenesis of CD59 proteinCTDPMID:17045307
Cd59bRat4,4'-sulfonyldiphenol multiple interactionsISOCD59 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of CD59 mRNACTDPMID:28628672

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Biological Process
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1 to 11 of 11 rows

Cellular Component
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Cd59bRatcell surface located_inISOCD59 (Homo sapiens)1624291 PMID:15907827RGDPMID:15907827
Cd59bRatcell surface located_inISOCd59b (Mus musculus)1624291 PMID:10946279 and PMID:11471050RGDPMID:10946279 and PMID:11471050
Cd59bRatcompact myelin  IDA 625622 RGD 
Cd59bRatexternal side of plasma membrane located_inISOCD59 (Homo sapiens)1624291 PMID:9724629RGDPMID:9724629
Cd59bRatextracellular space  IDA 1600496 RGD 
Cd59bRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Cd59bRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Cd59bRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Cd59bRatplasma membrane located_inISOCd59b (Mus musculus)1624291 PMID:11485913RGDPMID:11485913
Cd59bRatplasma membrane is_active_inIBAMGI:109177 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cd59bRatsarcolemma  IDA 1600501 RGD 
Cd59bRatside of membrane located_inIEAUniProtKB-KW:KW-03361600115GO_REF:0000043UniProtGO_REF:0000043
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Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd59bRatcomplement binding  IDA 1600496 RGD 
Cd59bRatcomplement binding enablesIBAPANTHER:PTN000004112 and Cd59b (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cd59bRatprotein binding enablesISOCD59 (Homo sapiens)1624291UniProtKB:O35587 more ...RGDPMID:17500595 more ...

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd59bRatcoagulation cascade pathway   IEA 6907045 KEGGrno:04610
Cd59bRatcomplement system pathway  IEA 6907045 KEGGrno:04610

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#
Reference Title
Reference Citation
1. Ascitic complement system in ovarian cancer. Bjorge L, etal., Br J Cancer. 2005 Mar 14;92(5):895-905.
2. Rafts in adult peripheral nerve myelin contain major structural myelin proteins and myelin and lymphocyte protein (MAL) and CD59 as specific markers. Erne B, etal., J Neurochem 2002 Aug;82(3):550-62.
3. Generation of a recombinant, membrane-targeted form of the complement regulator CD59: activity in vitro and in vivo. Fraser DA, etal., J Biol Chem. 2003 Dec 5;278(49):48921-7. Epub 2003 Sep 30.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Membrane-bound complement regulatory proteins inhibit complement activation by an immunotherapeutic mAb in a syngeneic rat colorectal cancer model. Gelderman KA, etal., Mol Immunol. 2003 Sep;40(1):13-23.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Complement inhibitors targeted to the proximal tubule prevent injury in experimental nephrotic syndrome and demonstrate a key role for C5b-9. He C, etal., J Immunol. 2005 May 1;174(9):5750-7.
8. C5b-9 membrane attack complex mediates endothelial cell apoptosis in experimental glomerulonephritis. Hughes J, etal., Am J Physiol Renal Physiol. 2000 May;278(5):F747-57.
9. Isolation and characterization of a membrane protein from rat erythrocytes which inhibits lysis by the membrane attack complex of rat complement. Hughes TR, etal., Biochem J. 1992 May 15;284 ( Pt 1):169-76.
10. Role of complement regulatory membrane proteins in ischaemia-reperfusion injury of rat gastric mucosa. Iwata F, etal., J Gastroenterol Hepatol. 1999 Oct;14(10):967-72.
11. Activation of complement components and reduced regulator expression in alcohol-induced liver injury in the rat. Jarvelainen HA, etal., Clin Immunol. 2002 Oct;105(1):57-63.
12. Suppression of complement regulatory proteins (CRPs) exacerbates experimental autoimmune anterior uveitis (EAAU). Jha P, etal., J Immunol. 2006 Jun 15;176(12):7221-31.
13. Binding of human and rat CD59 to the terminal complement complexes. Lehto T, etal., Immunology. 1997 Jan;90(1):121-8.
14. CD59 and CD48 expressed by rat retinal pigment epithelial cells are major ligands for the CD2-mediated alternative pathway of T cell activation. Liversidge J, etal., J Immunol. 1996 May 15;156(10):3696-703.
15. Loss of CD59 expression in breast tumours correlates with poor survival. Madjd Z, etal., J Pathol. 2003 Aug;200(5):633-9.
16. Role of CD59 in experimental glomerulonephritis in rats. Matsuo S, etal., Kidney Int. 1994 Jul;46(1):191-200.
17. Complement activation and CD59 expression in the motor facial nucleus following intracranial transection of the facial nerve in the adult rat. Mattsson P, etal., J Neuroimmunol. 1998 Nov 2;91(1-2):180-9.
18. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
19. Expression of complement regulatory proteins-CD 35, CD 46, CD 55, and CD 59-in benign and malignant endometrial tissue. Murray KP, etal., Gynecol Oncol. 2000 Feb;76(2):176-82.
20. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
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PMID:9724629   PMID:10946279   PMID:11471050   PMID:11485913   PMID:15489334   PMID:15907827   PMID:16034134   PMID:16502470   PMID:17166698   PMID:19056867   PMID:19190083   PMID:19199708  
PMID:20458337   PMID:21423176   PMID:22206666   PMID:23376485   PMID:23533145   PMID:25284781   PMID:28750658   PMID:31412214   PMID:31989689  



Cd59b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83110,914,008 - 110,932,489 (+)NCBIGRCr8
mRatBN7.2390,459,085 - 90,477,571 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,459,162 - 90,478,847 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx393,952,281 - 93,970,470 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03102,551,356 - 102,569,545 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03100,381,722 - 100,399,939 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0394,010,481 - 94,028,660 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,010,475 - 94,028,621 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03100,650,411 - 100,668,036 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4389,243,600 - 89,245,129 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1389,318,629 - 89,333,534 (-)NCBI
Celera389,520,423 - 89,538,310 (+)NCBICelera
Cytogenetic Map3q32NCBI
CD59
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381133,703,010 - 33,736,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1133,703,010 - 33,736,479 (-)EnsemblGRCh38hg38GRCh38
GRCh371133,724,556 - 33,758,025 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361133,681,132 - 33,714,600 (-)NCBINCBI36Build 36hg18NCBI36
Build 341133,681,133 - 33,714,600NCBI
Celera1133,872,059 - 33,905,528 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1133,421,201 - 33,454,193 (-)NCBIHuRef
CHM1_11133,724,069 - 33,757,538 (-)NCBICHM1_1
T2T-CHM13v2.01133,840,023 - 33,873,492 (-)NCBIT2T-CHM13v2.0
Cd59b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392103,900,127 - 103,920,619 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2103,896,142 - 103,921,534 (+)EnsemblGRCm39 Ensembl
GRCm382104,069,781 - 104,085,790 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2104,069,849 - 104,091,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv372103,911,167 - 103,925,114 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362103,871,849 - 103,885,796 (+)NCBIMGSCv36mm8
Cytogenetic Map2E2NCBI
cM Map254.51NCBI
Cd59
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542212,500,572 - 12,528,738 (+)NCBIChiLan1.0ChiLan1.0
CD59
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2935,924,653 - 35,961,425 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11135,929,328 - 35,965,188 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01133,680,580 - 33,708,479 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,558,898 - 33,590,156 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,552,164 - 33,590,157 (-)Ensemblpanpan1.1panPan2
CD59
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11833,977,433 - 33,999,145 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1833,977,480 - 33,998,329 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1833,582,994 - 33,604,719 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01834,588,535 - 34,610,237 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1834,588,574 - 34,610,237 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11834,147,266 - 34,158,335 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01833,740,409 - 33,762,219 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01834,376,094 - 34,397,903 (+)NCBIUU_Cfam_GSD_1.0
Cd59
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494731,117,789 - 31,137,338 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365334,242,589 - 4,263,136 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD59
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1227,186,587 - 27,207,303 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2229,777,121 - 29,797,735 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD59
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1131,547,876 - 31,571,720 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl131,547,937 - 31,570,835 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038128,644,490 - 128,668,102 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in Cd59b
80 total Variants

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:134
Interacting mature miRNAs:146
Transcripts:ENSRNOT00000067085
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat

1 to 10 of 35 rows
D3Wox16  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2390,477,202 - 90,477,342 (+)MAPPERmRatBN7.2
Rnor_6.0394,028,502 - 94,028,641NCBIRnor6.0
Rnor_5.03100,667,666 - 100,667,805UniSTSRnor5.0
RGSC_v3.4389,244,971 - 89,245,110UniSTSRGSC3.4
Celera389,538,152 - 89,538,291UniSTS
Cytogenetic Map3q32UniSTS
RH127373  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2390,477,243 - 90,477,436 (+)MAPPERmRatBN7.2
Rnor_6.0394,028,543 - 94,028,735NCBIRnor6.0
Rnor_5.03100,667,707 - 100,667,899UniSTSRnor5.0
RGSC_v3.4389,245,012 - 89,245,204UniSTSRGSC3.4
Celera389,538,193 - 89,538,385UniSTS
RH 3.4 Map3720.8UniSTS
Cytogenetic Map3q32UniSTS
BF403416  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2390,477,605 - 90,477,756 (+)MAPPERmRatBN7.2
Rnor_6.0394,028,905 - 94,029,055NCBIRnor6.0
Rnor_5.03100,668,069 - 100,668,219UniSTSRnor5.0
RGSC_v3.4389,245,374 - 89,245,524UniSTSRGSC3.4
Celera389,538,555 - 89,538,705UniSTS
RH 3.4 Map3718.91UniSTS
Cytogenetic Map3q32UniSTS


This gene Cd59b is modified in the following models/strains:




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000067085   ⟹   ENSRNOP00000060967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl390,459,212 - 90,478,847 (+)Ensembl
Rnor_6.0 Ensembl394,010,475 - 94,028,621 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103453   ⟹   ENSRNOP00000092965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl390,460,264 - 90,478,847 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105770   ⟹   ENSRNOP00000092232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl390,459,162 - 90,476,321 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111042   ⟹   ENSRNOP00000082990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl390,466,705 - 90,478,847 (+)Ensembl
RefSeq Acc Id: NM_012925   ⟹   NP_037057
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83110,914,097 - 110,932,281 (+)NCBI
mRatBN7.2390,459,175 - 90,477,361 (+)NCBI
Rnor_6.0394,010,481 - 94,028,660 (+)NCBI
Rnor_5.03100,650,411 - 100,668,036 (+)NCBI
RGSC_v3.4389,243,600 - 89,245,129 (+)RGD
Celera389,520,423 - 89,538,310 (+)RGD
Sequence:
RefSeq Acc Id: XM_039104370   ⟹   XP_038960298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83110,915,225 - 110,932,489 (+)NCBI
mRatBN7.2390,460,422 - 90,477,571 (+)NCBI
RefSeq Acc Id: XM_039104371   ⟹   XP_038960299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83110,914,008 - 110,932,489 (+)NCBI
mRatBN7.2390,459,085 - 90,477,571 (+)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_037057 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960298 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960299 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA88909 (Get FASTA)   NCBI Sequence Viewer  
  AAH63176 (Get FASTA)   NCBI Sequence Viewer  
  EDL79685 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060967
  ENSRNOP00000060967.2
  ENSRNOP00000082990
  ENSRNOP00000092965
GenBank Protein P27274 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_037057   ⟸   NM_012925
- Peptide Label: precursor
- UniProtKB: P27274 (UniProtKB/Swiss-Prot),   A6HNT4 (UniProtKB/TrEMBL),   A0A8I6AF42 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060967   ⟸   ENSRNOT00000067085
RefSeq Acc Id: XP_038960299   ⟸   XM_039104371
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038960298   ⟸   XM_039104370
- Peptide Label: isoform X1
- UniProtKB: P27274 (UniProtKB/Swiss-Prot),   A6HNT4 (UniProtKB/TrEMBL),   A0A8I6AF42 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092965   ⟸   ENSRNOT00000103453
UPAR/Ly6

Name Modeler Protein Id AA Range Protein Structure
AF-P27274-F1-model_v2 AlphaFold P27274 1-126 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692258
Promoter ID:EPDNEW_R2783
Type:initiation region
Name:Cd59_1
Description:CD59 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0394,010,470 - 94,010,530EPDNEW


1 to 29 of 29 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-48541 BioCyc
Ensembl Genes ENSRNOG00000042821 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000067085 ENTREZGENE
  ENSRNOT00000067085.4 UniProtKB/Swiss-Prot
  ENSRNOT00000103453 ENTREZGENE
  ENSRNOT00000111042 ENTREZGENE
Gene3D-CATH 2.10.60.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6891456 IMAGE-MGC_LOAD
InterPro CD59_antigen_CS UniProtKB/Swiss-Prot
  CNF-like_PLA2_Inhibitor UniProtKB/Swiss-Prot
  LY6_UPA_recep-like UniProtKB/Swiss-Prot
  Snake_toxin-like_sf UniProtKB/Swiss-Prot
KEGG Report rno:25407 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72927 IMAGE-MGC_LOAD
NCBI Gene 25407 ENTREZGENE
PANTHER COILED, ISOFORM A UniProtKB/Swiss-Prot
  LY6/PLAUR DOMAIN-CONTAINING PROTEIN 8 UniProtKB/Swiss-Prot
Pfam UPAR_LY6 UniProtKB/Swiss-Prot
PhenoGen Cd59b PhenoGen
PROSITE LY6_UPAR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000042821 RatGTEx
SMART SM00134 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57302 UniProtKB/Swiss-Prot
TIGR TC204015
UniProt A0A8I5ZW00_RAT UniProtKB/TrEMBL
  A0A8I6AF42 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AWC9_RAT UniProtKB/TrEMBL
  A6HNT4 ENTREZGENE, UniProtKB/TrEMBL
  CD59_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 29 of 29 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-02-28 Cd59b  CD59b molecule  Cd59  CD59 molecule  Name and Symbol changed 629549 APPROVED
2016-01-13 Cd59  CD59 molecule  Cd59  CD59 molecule, complement regulatory protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-11 Cd59  CD59 molecule, complement regulatory protein  Cd59  Cd59 molecule  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-15 Cd59  Cd59 molecule  Cd59  Cb59b molecule  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-29 Cd59  Cb59b molecule  Cd59b  CD59b moleucle, complement regulatory protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27 Cd59b  CD59b moleucle, complement regulatory protein  Cd59  CD59 antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Cd59  CD59 antigen      Symbol and Name status set to approved 70586 APPROVED