Cd59 (CD59 molecule (CD59 blood group)) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cd59 (CD59 molecule (CD59 blood group)) Ictidomys tridecemlineatus
Analyze
Symbol: Cd59
Name: CD59 molecule (CD59 blood group)
RGD ID: 12458583
Description: ENCODES a protein that exhibits complement binding (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of activation of membrane attack complex (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); Alcoholic Liver Diseases (ortholog); anterior uveitis (ortholog); FOUND IN anchored component of external side of plasma membrane (ortholog); cell surface (ortholog); compact myelin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CD59 glycoprotein; CD59 molecule
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494731,117,789 - 31,137,338 (+)NCBI
SpeTri2.0NW_0049365334,242,589 - 4,263,136 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Cd59
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494731,117,789 - 31,137,338 (+)NCBI
SpeTri2.0NW_0049365334,242,589 - 4,263,136 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD59
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381133,703,010 - 33,736,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1133,703,010 - 33,736,479 (-)EnsemblGRCh38hg38GRCh38
GRCh371133,724,556 - 33,758,025 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361133,681,132 - 33,714,600 (-)NCBINCBI36hg18NCBI36
Build 341133,681,133 - 33,714,600NCBI
Celera1133,872,059 - 33,905,528 (-)NCBI
Cytogenetic Map11p13NCBI
HuRef1133,421,201 - 33,454,193 (-)NCBIHuRef
CHM1_11133,724,069 - 33,757,538 (-)NCBICHM1_1
T2T-CHM13v2.01133,840,023 - 33,873,492 (-)NCBI
Cd59b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392103,900,127 - 103,920,619 (+)NCBIGRCm39mm39
GRCm39 Ensembl2103,900,194 - 103,921,532 (+)Ensembl
GRCm382104,069,781 - 104,085,790 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2104,069,849 - 104,091,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv372103,911,167 - 103,925,114 (+)NCBIGRCm37mm9NCBIm37
MGSCv362103,871,849 - 103,885,796 (+)NCBImm8
Cytogenetic Map2E2NCBI
Cd59
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2390,459,085 - 90,477,571 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl390,459,162 - 90,478,847 (+)Ensembl
Rnor_6.0394,010,481 - 94,028,660 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,010,475 - 94,028,621 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03100,650,411 - 100,668,036 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4389,243,600 - 89,245,129 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1389,318,629 - 89,333,534 (-)NCBI
Celera389,520,423 - 89,538,310 (+)NCBICelera
Cytogenetic Map3q32NCBI
Cd59
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542212,500,572 - 12,528,738 (+)NCBIChiLan1.0ChiLan1.0
CD59
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11133,558,898 - 33,590,156 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,552,164 - 33,590,157 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01133,680,580 - 33,708,479 (-)NCBIMhudiblu_PPA_v0panPan3
CD59
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11833,977,433 - 33,999,145 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1833,977,480 - 33,998,329 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1833,582,994 - 33,604,719 (+)NCBI
ROS_Cfam_1.01834,588,535 - 34,610,237 (+)NCBI
ROS_Cfam_1.0 Ensembl1834,588,574 - 34,610,237 (+)Ensembl
UMICH_Zoey_3.11834,147,266 - 34,158,335 (+)NCBI
UNSW_CanFamBas_1.01833,740,409 - 33,762,219 (+)NCBI
UU_Cfam_GSD_1.01834,376,094 - 34,397,903 (+)NCBI
CD59
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1227,186,587 - 27,207,303 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2229,777,121 - 29,797,735 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD59
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1131,547,876 - 31,571,720 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl131,547,937 - 31,570,835 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038128,644,490 - 128,668,102 (+)NCBIVero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013359623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013359623   ⟹   XP_013215077
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494731,117,789 - 31,137,338 (+)NCBI
SpeTri2.0NW_0049365334,242,589 - 4,263,136 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013215077 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3285487 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013215077   ⟸   XM_013359623
- UniProtKB: I3MH91 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
UPAR/Ly6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011395 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000010224 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011393 UniProtKB/TrEMBL
Gene3D-CATH 2.10.60.10 UniProtKB/TrEMBL
InterPro CD59_glyco UniProtKB/TrEMBL
  LY6_UPA_recep-like UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
NCBI Gene Cd59 ENTREZGENE
PANTHER PTHR10036:SF9 UniProtKB/TrEMBL
SMART SM00134 UniProtKB/TrEMBL
Superfamily-SCOP SSF57302 UniProtKB/TrEMBL
UniProt I3MH91 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Cd59  CD59 molecule (CD59 blood group)    CD59 molecule  Symbol and/or name change 5135510 APPROVED