Asip (agouti signaling protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Asip (agouti signaling protein) Rattus norvegicus
Analyze
Symbol: Asip
Name: agouti signaling protein
RGD ID: 2003
Description: Predicted to enable neuropeptide hormone activity; type 3 melanocortin receptor binding activity; and type 4 melanocortin receptor binding activity. Predicted to be involved in melanin biosynthetic process and melanosome organization. Predicted to act upstream of or within several processes, including adult feeding behavior; epigenetic programming in the zygotic pronuclei; and melanosome transport. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in pigmentation disease and type 2 diabetes mellitus. Orthologous to human ASIP (agouti signaling protein); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; melanocortin system pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; ammonium chloride; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A; agouti; agouti (coat color); agouti switch protein; agouti-signaling protein; ASP
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Asipem1Mcwi   Asipm1  
Genetic Models: ACI.FHH-(D1Mit18-D1Rat90)(D14Mit11-D14Rat33)(D14Rat65-D14Rat90)/EurMcwi-Asipem1Mcwi DA-Asipm1
Is Marker For: Strains:   BLK/N   F344-AsipATyrCKitH/Kyo  
Candidate Gene For: Coreg1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83163,933,768 - 164,021,377 (+)NCBIGRCr8
mRatBN7.23143,473,584 - 143,561,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,555,696 - 143,561,171 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,341,174 - 147,428,809 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03155,958,462 - 156,046,095 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03153,697,992 - 153,785,636 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03150,492,010 - 150,579,870 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,574,473 - 150,579,870 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03156,860,395 - 156,949,277 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43145,445,175 - 145,536,831 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,350,796 - 145,442,453 (+)NCBI
Celera3142,203,571 - 142,291,520 (+)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
AsipRatcoat/hair pigmentation trait  ISOASIP (Canis lupus familiaris)9068941Coat colour and agoutiOMIAPMID:12692166 more ...
AsipRatcoat/hair pigmentation trait  ISOASIP (Canis lupus familiaris)9068941Coat colour and saddle tan vs black-and-tanOMIAPMID:23519866 more ...

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
extracellular region  (IEA)
extracellular space  (IBA,IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. Neomorphic agouti mutations in obese yellow mice. Duhl DM, etal., Nat Genet. 1994 Sep;8(1):59-65.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Cloning of the rat agouti gene and identification of the rat nonagouti mutation. Kuramoto T, etal., Mamm Genome 2001 Jun;12(6):469-71.
5. Glucose metabolism and insulin sensitivity in transgenic mice overexpressing leptin with lethal yellow agouti mutation: usefulness of leptin for the treatment of obesity-associated diabetes. Masuzaki H, etal., Diabetes. 1999 Aug;48(8):1615-22.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. The critical role of the melanocortin system in the control of energy balance. Seeley RJ, etal., Annu Rev Nutr 2004;24:133-49.
13. Agouti expression in human adipose tissue: functional consequences and increased expression in type 2 diabetes. Smith SR, etal., Diabetes. 2003 Dec;52(12):2914-22.
14. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:7665913   PMID:9454589   PMID:9548375   PMID:12177191   PMID:12601169   PMID:17247639   PMID:17873059   PMID:19534427   PMID:21949658   PMID:29219041  


Genomics

Comparative Map Data
Asip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83163,933,768 - 164,021,377 (+)NCBIGRCr8
mRatBN7.23143,473,584 - 143,561,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,555,696 - 143,561,171 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,341,174 - 147,428,809 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03155,958,462 - 156,046,095 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03153,697,992 - 153,785,636 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03150,492,010 - 150,579,870 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,574,473 - 150,579,870 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03156,860,395 - 156,949,277 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43145,445,175 - 145,536,831 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,350,796 - 145,442,453 (+)NCBI
Celera3142,203,571 - 142,291,520 (+)NCBICelera
Cytogenetic Map3q41NCBI
ASIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382034,186,493 - 34,269,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2034,194,569 - 34,269,344 (+)EnsemblGRCh38hg38GRCh38
GRCh372032,782,368 - 32,857,150 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362032,311,832 - 32,320,809 (+)NCBINCBI36Build 36hg18NCBI36
Build 342032,311,831 - 32,320,809NCBI
Celera2029,597,653 - 29,606,630 (+)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2029,629,973 - 29,638,950 (+)NCBIHuRef
CHM1_12032,749,256 - 32,758,241 (+)NCBICHM1_1
T2T-CHM13v2.02035,912,881 - 35,992,459 (+)NCBIT2T-CHM13v2.0
a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392154,792,519 - 154,892,932 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2154,633,322 - 154,892,932 (+)EnsemblGRCm39 Ensembl
GRCm382154,950,599 - 155,051,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,018,266 - 155,027,104 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2154,791,402 - 155,051,012 (+)EnsemblGRCm38mm10GRCm38
MGSCv372154,839,306 - 154,876,748 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362154,705,018 - 154,742,423 (+)NCBIMGSCv36mm8
Celera2160,940,588 - 160,977,934 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map276.83NCBI
Asip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542227,020,386 - 27,057,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542227,021,810 - 27,150,339 (-)NCBIChiLan1.0ChiLan1.0
ASIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,987,569 - 39,997,795 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12039,980,671 - 39,990,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02030,583,038 - 30,592,726 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12031,718,169 - 31,727,217 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2031,718,169 - 31,727,217 (+)Ensemblpanpan1.1panPan2
ASIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12423,338,757 - 23,393,913 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2423,354,888 - 23,393,896 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2422,999,470 - 23,041,722 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,041,356 - 24,084,629 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,041,485 - 24,084,612 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12423,334,340 - 23,373,386 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02423,428,191 - 23,467,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02423,865,404 - 23,906,575 (+)NCBIUU_Cfam_GSD_1.0
Asip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,298,779 - 172,407,882 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365616,341,623 - 6,346,458 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365616,341,667 - 6,346,440 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1737,545,474 - 37,718,779 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11737,542,615 - 37,718,787 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21742,538,122 - 42,686,968 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1238,479,328 - 38,568,756 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605088,288,816 - 88,382,787 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248425,079,499 - 5,084,933 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248425,079,499 - 5,084,933 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Asip
415 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:153
Interacting mature miRNAs:176
Transcripts:ENSRNOT00000023905
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat

Markers in Region
RH142058  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23143,560,914 - 143,561,114 (+)MAPPERmRatBN7.2
Rnor_6.03150,579,615 - 150,579,814NCBIRnor6.0
Rnor_5.03156,949,022 - 156,949,221UniSTSRnor5.0
RGSC_v3.43145,536,575 - 145,536,774UniSTSRGSC3.4
Celera3142,291,265 - 142,291,464UniSTS
RH 3.4 Map31295.9UniSTS
Cytogenetic Map3q42UniSTS
PMC151376P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23143,456,350 - 143,456,662 (+)MAPPERmRatBN7.2
mRatBN7.23143,473,511 - 143,473,814 (+)MAPPERmRatBN7.2
Rnor_6.03150,491,938 - 150,492,240NCBIRnor6.0
Rnor_6.03150,474,778 - 150,475,088NCBIRnor6.0
Rnor_5.03156,860,323 - 156,860,625UniSTSRnor5.0
Rnor_5.03156,843,824 - 156,844,134UniSTSRnor5.0
RGSC_v3.43145,428,167 - 145,428,477UniSTSRGSC3.4
RGSC_v3.43145,445,103 - 145,445,405UniSTSRGSC3.4
Celera3142,203,499 - 142,203,801UniSTS
Celera3142,186,580 - 142,186,890UniSTS
Cytogenetic Map3q42UniSTS


Related Rat Strains
The following Strains have been annotated to Asip
BLK/N     F344-AsipATyrCKitH/Kyo    


Genetic Models
This gene Asip is modified in the following models/strains:
ACI.FHH-(D1Mit18-D1Rat90)(D14Mit11-D14Rat33)(D14Rat65-D14Rat90)/EurMcwi-Asipem1Mcwi     DA-Asipm1    


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 14
Below cutoff 2 6 6 1 6 1 1 6 2 20 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000023905   ⟹   ENSRNOP00000023905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3143,555,696 - 143,561,171 (+)Ensembl
Rnor_6.0 Ensembl3150,574,473 - 150,579,870 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095524   ⟹   ENSRNOP00000086568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3143,555,696 - 143,561,171 (+)Ensembl
RefSeq Acc Id: NR_131764
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83163,933,768 - 164,021,377 (+)NCBI
mRatBN7.23143,473,584 - 143,561,170 (+)NCBI
Rnor_6.03150,492,010 - 150,579,870 (+)NCBI
Celera3142,203,571 - 142,291,520 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_443211 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB21564 (Get FASTA)   NCBI Sequence Viewer  
  BAB21579 (Get FASTA)   NCBI Sequence Viewer  
  EDL85941 (Get FASTA)   NCBI Sequence Viewer  
  EDL85942 (Get FASTA)   NCBI Sequence Viewer  
  EDL85943 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000023905.6
  ENSRNOP00000086568.1
GenBank Protein Q99JA2 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000023905   ⟸   ENSRNOT00000023905
RefSeq Acc Id: ENSRNOP00000086568   ⟸   ENSRNOT00000095524
Protein Domains
Agouti

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99JA2-F1-model_v2 AlphaFold Q99JA2 1-131 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2003 AgrOrtholog
BioCyc Gene G2FUF-47155 BioCyc
Ensembl Genes ENSRNOG00000017701 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023905.7 UniProtKB/TrEMBL
  ENSRNOT00000095524.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.760.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Agouti UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Agouti_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Agouti_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24152 UniProtKB/Swiss-Prot
NCBI Gene 24152 ENTREZGENE
PANTHER AGOUTI-SIGNALING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16551 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Agouti UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Asip PhenoGen
PROSITE AGOUTI_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AGOUTI_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017701 RatGTEx
SMART Agouti UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57055 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC209185
UniProt A0A8I6A2G1_RAT UniProtKB/TrEMBL
  ASIP_RAT UniProtKB/Swiss-Prot
  F1LQS7 ENTREZGENE, UniProtKB/TrEMBL
  Q99JA2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-03-24 Asip  agouti signaling protein  A  agouti  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 A  agouti    agouti   Symbol and Name status set to approved 1299863 APPROVED
2002-06-10 A  agouti       Name updated 70585 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_function mouse homolog is paracrine signaling protein 68690
gene_mutations_overexpression 19-bp deletion causes nonagouti mutation 68690
gene_process mouse homolog produces banded pigment in individual hairs 68690
gene_protein 131 amino acid protein