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Gene: Wdr54 (WD repeat domain 54) Rattus norvegicus

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Symbol:

Wdr54

Name:

WD repeat domain 54

RGD ID:

1561494

Description:

Predicted to enable protein homodimerization activity. Involved in fusion of sperm to egg plasma membrane involved in single fertilization. Located in cytoplasm and plasma membrane. Orthologous to human WDR54 (WD repeat domain 54); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC103692166; LOC500226; RGD1561494; similar to D3Mm3e; WD repeat-containing protein 54

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WDR54 (WD repeat domain 54)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Wdr54 (WD repeat domain 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wdr54 (WD repeat domain 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WDR54 (WD repeat domain 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WDR54 (WD repeat domain 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wdr54 (WD repeat domain 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WDR54 (WD repeat domain 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WDR54 (WD repeat domain 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wdr54 (WD repeat domain 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	WDR54 (WD repeat domain 54)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Wdr54 (WD repeat domain 54)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	wdr54 (WD repeat domain 54)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F39H12.2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	117,212,677 - 117,236,456 (-)	NCBI		GRCr8
mRatBN7.2	4	115,654,968 - 115,677,979 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	115,654,968 - 115,661,562 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	121,131,661 - 121,138,258 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	116,906,844 - 116,913,441 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	115,521,131 - 115,527,714 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	114,847,722 - 114,871,989 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	113,981,653 - 113,988,246 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	4	114,850,815 - 114,853,868 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	179,436,792 - 179,460,392 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	117,360,988 - 117,367,581 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	104,649,110 - 104,655,703 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Wdr54	Rat	congenital disorder of glycosylation type IIb		ISO	WDR54 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital disorder of glycosylation type 2B	ClinVar	PMID:24716661 more ...
Wdr54	Rat	dystonia		ISO	WDR54 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dystonia	ClinVar	PMID:16697227 more ...
Wdr54	Rat	Methylmalonyl-CoA Epimerase Deficiency		ISO	WDR54 (Homo sapiens)	8554872	ClinVar Annotator: match by term: METHYLMALONIC ACIDURIA III	ClinVar	PMID:16697227 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Wdr54	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Wdr54 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of WDR54 mRNA	CTD	PMID:21570461
Wdr54	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of WDR54 mRNA	CTD	PMID:33387578
Wdr54	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of WDR54 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of WDR54 mRNA	CTD	PMID:28628672
Wdr54	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of WDR54 mRNA	CTD	PMID:28628672
Wdr54	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	Wdr54 (Mus musculus)	6480464	Fenretinide results in increased expression of WDR54 mRNA	CTD	PMID:28973697
Wdr54	Rat	5-aza-2'-deoxycytidine	affects expression	ISO	WDR54 (Homo sapiens)	6480464	Decitabine affects the expression of WDR54 mRNA	CTD	PMID:23300844
Wdr54	Rat	acrylamide	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	Acrylamide results in decreased expression of WDR54 mRNA	CTD	PMID:32763439
Wdr54	Rat	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of WDR54 mRNA	CTD	PMID:23630614
Wdr54	Rat	aflatoxin B1	increases expression	ISO	WDR54 (Homo sapiens)	6480464	Aflatoxin B1 results in increased expression of WDR54 mRNA	CTD	PMID:27153756
Wdr54	Rat	amphetamine	increases expression	EXP		6480464	Amphetamine results in increased expression of WDR54 mRNA	CTD	PMID:30779732
Wdr54	Rat	antirheumatic drug	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	Antirheumatic Agents results in decreased expression of WDR54 mRNA	CTD	PMID:24449571
Wdr54	Rat	arsenite(3-)	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	arsenite promotes the reaction [G3BP1 protein binds to WDR54 mRNA]	CTD	PMID:32406909
Wdr54	Rat	benzo[a]pyrene	increases expression	ISO	WDR54 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of WDR54 mRNA	CTD	PMID:22316170
Wdr54	Rat	benzo[a]pyrene	decreases expression	ISO	Wdr54 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of WDR54 mRNA	CTD	PMID:22228805
Wdr54	Rat	benzo[a]pyrene diol epoxide I	increases expression	ISO	WDR54 (Homo sapiens)	6480464	7 more ...	CTD	PMID:26238291
Wdr54	Rat	beta-lapachone	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	beta-lapachone results in decreased expression of WDR54 mRNA	CTD	PMID:38218311
Wdr54	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of WDR54 mRNA	CTD	PMID:25181051 and PMID:30816183
Wdr54	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of WDR54 mRNA	CTD	PMID:34947998
Wdr54	Rat	bisphenol A	affects expression	ISO	WDR54 (Homo sapiens)	6480464	bisphenol A affects the expression of WDR54 mRNA	CTD	PMID:30903817
Wdr54	Rat	bisphenol F	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of WDR54 mRNA	CTD	PMID:28628672
Wdr54	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of WDR54 mRNA	CTD	PMID:33453195
Wdr54	Rat	carbamazepine	affects expression	ISO	WDR54 (Homo sapiens)	6480464	Carbamazepine affects the expression of WDR54 mRNA	CTD	PMID:25979313
Wdr54	Rat	cisplatin	increases expression	ISO	WDR54 (Homo sapiens)	6480464	Cisplatin results in increased expression of WDR54 mRNA	CTD	PMID:27594783
Wdr54	Rat	cisplatin	affects expression	ISO	WDR54 (Homo sapiens)	6480464	Cisplatin affects the expression of WDR54 mRNA	CTD	PMID:23300844
Wdr54	Rat	copper(II) chloride	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	cupric chloride results in decreased expression of WDR54 mRNA	CTD	PMID:38568856
Wdr54	Rat	coumestrol	increases expression	ISO	WDR54 (Homo sapiens)	6480464	Coumestrol results in increased expression of WDR54 mRNA	CTD	PMID:19167446
Wdr54	Rat	coumestrol	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	[Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in increased expression of WDR54 mRNA	CTD	PMID:19167446
Wdr54	Rat	cyclosporin A	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of WDR54 mRNA	CTD	PMID:20106945 more ...
Wdr54	Rat	dexamethasone	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of WDR54 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of WDR54 mRNA	CTD	PMID:28628672
Wdr54	Rat	dimethylarsinic acid	multiple interactions	ISO	Wdr54 (Mus musculus)	6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of WDR54 mRNA	CTD	PMID:34876320
Wdr54	Rat	dioxygen	increases expression	ISO	WDR54 (Homo sapiens)	6480464	Oxygen deficiency results in increased expression of WDR54 mRNA	CTD	PMID:24236059
Wdr54	Rat	diuron	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	Diuron results in decreased expression of WDR54 mRNA	CTD	PMID:35967413
Wdr54	Rat	dorsomorphin	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of WDR54 mRNA	CTD	PMID:27188386
Wdr54	Rat	Enterolactone	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	[Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in increased expression of WDR54 mRNA	CTD	PMID:19167446
Wdr54	Rat	epoxiconazole	decreases expression	ISO	Wdr54 (Mus musculus)	6480464	epoxiconazole results in decreased expression of WDR54 mRNA	CTD	PMID:35436446
Wdr54	Rat	ethanol	affects expression	ISO	Wdr54 (Mus musculus)	6480464	Ethanol affects the expression of WDR54 mRNA	CTD	PMID:30319688
Wdr54	Rat	furan	increases expression	EXP		6480464	furan results in increased expression of WDR54 mRNA	CTD	PMID:25539665
Wdr54	Rat	glycidyl methacrylate	increases expression	ISO	WDR54 (Homo sapiens)	6480464	glycidyl methacrylate results in increased expression of WDR54 protein	CTD	PMID:36641056
Wdr54	Rat	indometacin	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of WDR54 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of WDR54 mRNA	CTD	PMID:28628672
Wdr54	Rat	inulin	multiple interactions	ISO	Wdr54 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in increased expression of WDR54 mRNA	CTD	PMID:36331819
Wdr54	Rat	ivermectin	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	Ivermectin results in decreased expression of WDR54 protein	CTD	PMID:32959892
Wdr54	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of WDR54 mRNA	CTD	PMID:30047161
Wdr54	Rat	methylarsonic acid	multiple interactions	ISO	Wdr54 (Mus musculus)	6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of WDR54 mRNA	CTD	PMID:34876320
Wdr54	Rat	methylmercury chloride	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	methylmercuric chloride results in decreased expression of WDR54 mRNA	CTD	PMID:28001369
Wdr54	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of WDR54 mRNA	CTD	PMID:33387578
Wdr54	Rat	perfluorononanoic acid	increases expression	ISO	WDR54 (Homo sapiens)	6480464	perfluoro-n-nonanoic acid results in increased expression of WDR54 mRNA	CTD	PMID:38568856
Wdr54	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Wdr54 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in increased expression of WDR54 mRNA	CTD	PMID:36331819
Wdr54	Rat	perfluorooctanoic acid	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	perfluorooctanoic acid results in decreased expression of WDR54 mRNA	CTD	PMID:36326898
Wdr54	Rat	phenylmercury acetate	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of WDR54 mRNA	CTD	PMID:27188386
Wdr54	Rat	phenylmercury acetate	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	Phenylmercuric Acetate results in decreased expression of WDR54 mRNA	CTD	PMID:26272509
Wdr54	Rat	quercetin	increases expression	ISO	WDR54 (Homo sapiens)	6480464	Quercetin results in increased expression of WDR54 mRNA	CTD	PMID:21632981
Wdr54	Rat	SB 431542	multiple interactions	ISO	WDR54 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of WDR54 mRNA	CTD	PMID:27188386
Wdr54	Rat	sodium arsenate	multiple interactions	ISO	Wdr54 (Mus musculus)	6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of WDR54 mRNA	CTD	PMID:34876320
Wdr54	Rat	sodium arsenite	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of WDR54 mRNA	CTD	PMID:38568856
Wdr54	Rat	sodium arsenite	multiple interactions	ISO	Wdr54 (Mus musculus)	6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of WDR54 mRNA	CTD	PMID:34876320
Wdr54	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of WDR54 mRNA	CTD	PMID:30047161
Wdr54	Rat	sulforaphane	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	sulforaphane results in decreased expression of WDR54 mRNA	CTD	PMID:31838189
Wdr54	Rat	T-2 toxin	increases expression	ISO	WDR54 (Homo sapiens)	6480464	T-2 Toxin results in increased expression of WDR54 mRNA	CTD	PMID:31863870
Wdr54	Rat	tacrolimus hydrate	decreases expression	ISO	Wdr54 (Mus musculus)	6480464	Tacrolimus results in decreased expression of WDR54 mRNA	CTD	PMID:25270620
Wdr54	Rat	tetrachloroethene	decreases expression	ISO	Wdr54 (Mus musculus)	6480464	Tetrachloroethylene results in decreased expression of WDR54 mRNA	CTD	PMID:28973375
Wdr54	Rat	thimerosal	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	Thimerosal results in decreased expression of WDR54 mRNA	CTD	PMID:27188386
Wdr54	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of WDR54 mRNA	CTD	PMID:34492290
Wdr54	Rat	thiram	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	Thiram results in decreased expression of WDR54 mRNA	CTD	PMID:38568856
Wdr54	Rat	valproic acid	increases expression	ISO	WDR54 (Homo sapiens)	6480464	Valproic Acid results in increased expression of WDR54 mRNA	CTD	PMID:29154799
Wdr54	Rat	valproic acid	affects expression	ISO	WDR54 (Homo sapiens)	6480464	Valproic Acid affects the expression of WDR54 mRNA	CTD	PMID:25979313
Wdr54	Rat	valproic acid	decreases expression	ISO	WDR54 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of WDR54 mRNA	CTD	PMID:23179753

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Wdr54	Rat	fusion of sperm to egg plasma membrane involved in single fertilization	involved_in	IMP		408345208	PMID:37951137	UniProt
Wdr54	Rat	negative regulation of receptor internalization	involved_in	ISO	WDR54 (Homo sapiens)	1624291	PMID:30458214	RGD	PMID:30458214
Wdr54	Rat	regulation of epidermal growth factor receptor signaling pathway	involved_in	ISO	WDR54 (Homo sapiens)	1624291	PMID:30458214	RGD	PMID:30458214
Wdr54	Rat	regulation of MAPK cascade	involved_in	ISO	WDR54 (Homo sapiens)	1624291	PMID:30458214	RGD	PMID:30458214
Wdr54	Rat	single fertilization	involved_in	IMP		408345208	PMID:37951137	UniProt

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Wdr54	Rat	cytoplasm	located_in	IDA		408345208	PMID:37951137	UniProt
Wdr54	Rat	motile cilium	is_active_in	IBA	PANTHER:PTN000347236 and UniProtKB:Q8TBY9	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Wdr54	Rat	plasma membrane	located_in	IDA		408345208	PMID:37951137	UniProt
Wdr54	Rat	vesicle	located_in	ISO	WDR54 (Homo sapiens)	1624291	PMID:30458214	RGD	PMID:30458214

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Wdr54	Rat	protein binding	enables	ISO	WDR54 (Homo sapiens) and UniProtKB:Q9H977-4	1624291	UniProtKB:Q9BRQ3 and PMID:32296183	RGD	PMID:32296183
Wdr54	Rat	protein binding	enables	IPI	UniProtKB:Q6AY06	408345208	PMID:37951137	UniProt
Wdr54	Rat	protein binding	enables	IPI	UniProtKB:F1M928	408345208	PMID:37951137	UniProt
Wdr54	Rat	protein homodimerization activity	enables	ISO	WDR54 (Homo sapiens)	1624291	PMID:30458214	RGD	PMID:30458214

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Participation of WD repeat-containing protein 54 (WDR54) in rat sperm-oocyte fusion through interaction with both IZUMO1 and JUNO.	Lai X, etal., Theriogenology. 2024 Jan 15;214:286-297. doi: 10.1016/j.theriogenology.2023.10.031. Epub 2023 Nov 7.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:30458214

Wdr54
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	117,212,677 - 117,236,456 (-)	NCBI		GRCr8
mRatBN7.2	4	115,654,968 - 115,677,979 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	115,654,968 - 115,661,562 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	121,131,661 - 121,138,258 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	116,906,844 - 116,913,441 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	115,521,131 - 115,527,714 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	114,847,722 - 114,871,989 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	113,981,653 - 113,988,246 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	4	114,850,815 - 114,853,868 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	179,436,792 - 179,460,392 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	117,360,988 - 117,367,581 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	104,649,110 - 104,655,703 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

WDR54
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	74,421,730 - 74,425,755 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	74,421,678 - 74,425,755 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	74,648,857 - 74,652,882 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	74,502,393 - 74,506,390 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	74,560,539 - 74,564,536	NCBI
Celera	2	74,480,074 - 74,484,071 (+)	NCBI		Celera
Cytogenetic Map	2	p13.1	NCBI
HuRef	2	74,385,197 - 74,389,194 (+)	NCBI		HuRef
CHM1_1	2	74,578,303 - 74,582,300 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	74,430,287 - 74,434,312 (+)	NCBI		T2T-CHM13v2.0

Wdr54
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	83,129,691 - 83,133,383 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	83,126,342 - 83,133,379 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	83,152,710 - 83,156,524 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	83,149,361 - 83,156,397 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	83,102,704 - 83,106,373 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	83,118,406 - 83,122,025 (-)	NCBI		MGSCv36	mm8
Celera	6	85,135,616 - 85,139,287 (-)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	35.94	NCBI

Wdr54
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	11,358,694 - 11,362,053 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	11,358,694 - 11,362,138 (-)	NCBI	ChiLan1.0	ChiLan1.0

WDR54
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	51,963,500 - 51,967,536 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	51,966,253 - 51,970,289 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	74,488,345 - 74,492,392 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	75,994,378 - 75,998,385 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	75,994,394 - 75,998,385 (+)	Ensembl	panpan1.1		panPan2

WDR54
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	48,700,432 - 48,734,250 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	48,700,431 - 48,704,344 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	48,342,069 - 48,375,651 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	49,559,726 - 49,593,603 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	49,559,725 - 49,563,638 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	48,576,773 - 48,610,446 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	48,643,308 - 48,676,908 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	49,201,309 - 49,235,141 (-)	NCBI		UU_Cfam_GSD_1.0

Wdr54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	10,087,698 - 10,091,606 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936556	645,933 - 662,452 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936556	646,312 - 649,961 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WDR54
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	68,614,020 - 68,622,598 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	68,614,019 - 68,618,433 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	71,804,660 - 71,809,072 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WDR54
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	32,851,904 - 32,855,918 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	32,851,959 - 32,855,912 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	79,314,481 - 79,318,492 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wdr54
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	29,076,554 - 29,080,128 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	29,076,668 - 29,080,169 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Wdr54
100 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	606
Count of miRNA genes:	263
Interacting mature miRNAs:	352
Transcripts:	ENSRNOT00000013128
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	85253748	148090731	Rat
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	95174120	140174120	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	90850165	135850165	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	26775591	168368347	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	78881294	117676292	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70362013	132642728	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	106649412	151649412	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	109827074	154827074	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
724522	Bp146	Blood pressure QTL 146	2.2	0.0021	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	73630210	118630210	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	86730991	131730991	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	81192555	126192555	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	87327165	132327165	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	39524264	116179656	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	87327165	132327165	Rat
2302051	Pia28	Pristane induced arthritis QTL 28	5.3	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	73630210	118630210	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	105789505	150789505	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	80694870	125694870	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	109827074	154827074	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73169846	132642728	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	84728680	129854654	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	106805662	151805662	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	70808386	115808386	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	78878504	123878504	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	62277855	128289560	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	56698790	126192555	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	81006124	120102625	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	114627026	159627026	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	85253748	150276390	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	103194656	148194656	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
15	11	45	199	88	83	40	31	40	12	225	111	167	51	80	43


RefSeq Transcripts	NM_001109245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC117925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013128 ⟹ ENSRNOP00000013128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	115,654,968 - 115,661,562 (-)	Ensembl
Rnor_6.0 Ensembl	4	113,981,653 - 113,988,246 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090828 ⟹ ENSRNOP00000068651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	114,850,815 - 114,853,868 (-)	Ensembl

RefSeq Acc Id:

NM_001109245 ⟹ NP_001102715

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,212,677 - 117,219,270 (-)	NCBI
mRatBN7.2	4	115,654,968 - 115,661,562 (-)	NCBI
Rnor_6.0	4	114,847,722 - 114,854,315 (-)	NCBI
Rnor_5.0	4	179,436,792 - 179,460,392 (-)	NCBI
RGSC_v3.4	4	117,360,988 - 117,367,581 (-)	RGD
Celera	4	104,649,110 - 104,655,703 (-)	RGD

Sequence:

show sequence

GTCGTCTCTATGGTGGCGGCGGATTCGGAGGGACTTGAGGATCGCGGCGTCTGGCAAGGCGCACTTGAGGGTTGGGTGTGGGTTGCAGGTGTGACCTCTGACCTTGGCGTGGGCCTTCAGGTAGCCAA
GCTGTGGGAGGAAGGGTTGGAGACCACATTCTGCCTTTTTAGCTGAGACGTTCGGTGCTACCAGGATGTTCCGCCGCGAGCGCTCCATCCCACTTCGTGGCTCTGCCGCCGCCCTGTCTAACAACCTC
AGTGTACTGCAGCTTCCAGCCCGTGATCTCACGCATTTTGGGGTGGTTCATGGACCGAGCGCCCAGCTTCTCAGCGCTGCCCCTGAGGGTGTGCCCTTGGCCCAGCGCCAGCTCCACGTTAAAGAGGG
CGCTGGAGTGAGTCCCCCACTTATCACTCAGGTCCACTGGTGTGTCCTCCCCTTCAGAGTACTGCTGGTCCTCACCTCACACCGAGGGATACAGATGTACGAGTCTGACGGCTCCGTCATGGTTTACT
GGCATGCCTTGGACTCAGGAGATGCTTCTTCAGTACAGGCTATGTTTGCCCGAGGAATTGCTGCCAGCGTCCACTTCATCTGTGTGGGAACGTGGTCTGGTCGGATACTGGTCTTTGATATCCCCGCT
AAGGGTCCCAATATTGTACTCAACGAGGAACTAGCTGGGCACCAGACACCAATCACAGATATCGCCACTGAGCGTGCCCAGGGACAGGATGGTGTTGCTGACATGGTGACAGCAGATGACTCAGGTGT
CCTGTGTGTCTGGAGGTCAGGACCTGAGTTCACCTTACTGACCCGAATAGCAGGATTCGGGGTCCCGTGCCCCTCTGTGCAGCTGTGGCAGGGGATCGTAGCAGCAGGCTATGGAAATGGACAAGTGC
GTCTGTATGACGCTGGCACAGGAGCCCTCCACATCCAGATCAGTGCCCACGCCCGGACCATCTCTGCCCTGGACCTAGCTCCAGAGGTGGGCAAGCTGCTGTCTGCAGCTGAGGATACCTTTGTACAC
ATCTGGAAGCTGAACAGAAACCCAGAGAGTGGCTCCATTGAGGTGGAACACTGCCATGGCGAATGCATTTCTGACACGCAGGTGTGCGGTGCTCGGTTCTGTGACCCAGGGGGCAGCTCCTTTGCTGT
GACAGGCTATGACCTTGCTGAGATCCTGAGATTTGGCAGTGTCTGAGAGTGGAGCAGCGGTCCCTTCTCCCTTGATATTTATAAAGTATTCCCTCCACCAAGCCCTTGTCTGATCACTCAGCATCACA
GCCACACCTCTAAACATCAAGGGGACAGGTTCAGAGCACGCAGAAGCCACTGGTCCTCAGAGACCATGTCCTCAAAGACCAAGTGAAGGCTTCGAGCTGTTAAATAACTTTTAATGGTTGATGTAGGG
GTCACAAGGGAGGTGCTTTCCTCTCCGCTCTCCAGTGCAGCCCTGGAGGCTGGTTAGTGTAGGGAGGTAGGGCAGAGTTGTTCCAGTTTTCTCCCAGGAAGCGCTTGGGGGGGGGGGTCCTAGCCAGC
TCCGGGAATGGTCCCCTCAGTACCATCTAACCACAACTTAAGAAGGGTTTGTGTCACCCCTCCCCAGCCTTCTGTCCTTGTCCAGTGGAGGAAGAGGAGCCCAAGCTGGCCAGCTGGCCCTAGAGTCC
AGTTGTCCTTGGGTCATTTTCTCTCTTGGCCATCCTCTTGCTGGTGCCTCTCACACTGGGGACTGGAGCCATGTGCTGAGCTGACTTTTGCTGTAGAAACCTCTGGATTGTGGGGATCGCTGTGGGGG
AAGGGGTGCAACCGAGCGAGAAGGCCCAAGGGAGTGGTCTGCAGGGACAGCATCCAGGGAAAAGGTGCGGGGTCTTCCCCAGGGCAGGGGTTGCGTCCAGGTTGGGACTGAGGCAGGCGAGCAGGAGC
TACGCAAGGCAGGCTGGTCGGTAAACATTGCTAGCCAGGGTGGGGGCGGCTCCAGCCTTGTGCCCTCCCGCTGGGCCAGGATGTCTGTCACTGCTGCGATGTCCTCTAGTGGCTCAATGGCTGTGGCA
GCAGGGAGGGGGGAAGGGGAGGGGGCTAGTCAGAGCTCAAGCCCTGCCTGCTCAGCCCTGCCTGTCACCTGTCACTGTAATAGGAAGAAAGCAAGGCCCGGATCTCAGCCGAGATGGCATTATTCTGC
AGGAGCAGCCCCTCACAGGGACCTCCCGAGGCCACGGGCTCTGATAAGACTGTGACAATAGGGGTGGGGGGTAGCAGAAGTGGGTAAAGAAACCAAGAAGAAAGGAGAGAAAGCAGTGCCGGGCAAGT
GAGGTCAGAAGAGGAGACAGGAGTCCACATGCATGGAGGGAAACAGAAAGGAAGGATTAGGATAGATGGCAGAAAATGACTCCGGCTCTTTGGGGTTTGTTCTAAACTTGGGTGGAAATGGTTTTAAG
AATTGGAGAGAAAGGGGGAATACAGTAGGGCTGAGTGGGCCCTGGCCCCCATGGTGTGCTTTCTCTCTGGTTCTATTACCCAGGATCCCTTGAGGTCCCCACCCTACTTTCCATCAGCCTCCCTCCGA
CCCTCCTCTCACTCACCCATCTCGTGGTATAAGGACCCCTGCTTGGCCAGTGCTTGGGGTGGTTTCCGGGGAGCAGGAGTTTCGATCTTCATAACTTCATCACAACAGTGTTTCCACTGGCCTGCGAG
GAGGGGAGGGTAGGAGGAGAAGAGAGGAGAGGACCAGACCCATGCAGGAGCTGCCTGCTTCCTGTCACATTGCCCTGCCCTGCCACAGCAATCCCAGAAGTCCTGCCCGGCTCTTTCTTACTCATGTC
AAGGAACAGCTGCCACAGCGCCTCCATCCAGCTCTGCAGGGCATCCCTGCTCTGCACCTGGAGCGTGTTTGTCACCTCATCATCTCCATACCGGTTGCTGATACTGAGGGTGAAAGGCCACTCCGGGG
CCTGCTCCAACTCCCCTGCCCGGACCCTAGTCTCCTGCAGGGGGAAAGCAAGGGGCTGCCTTCACCTCTACCCATCAGCCCTGCCTAGAAGTACCTGTGGGACTTCTGTTGGCCCTTCATTTTCCTCC
TGCTATCTCTAGTATGGCGGTGGGGCAGACAGAGTGGTGGGGATAAAGGGCCTGTGCTAAGACAAGTAAGGAGGAGCAGGCAGAGACAGGAAGGGGGGACAGAGCAAGGCAGGGGGAAAGGGGAGGAT
AGGAAAGGGGAGGTCCAGAGGTGGGCAAGAAACCCAGGTCCAGGTTCAAGCTGCCTGCTCAGTACATCCAAAACACAGGCAGGGGTCTGAGGTGCGGTGCTGTGGTAGGGCACTTGCCCAAAGCACTG
GAGGAGAAACTACCTGACCCAACACAAAGGCCTCTAGGGTTCGGAAGGGACTGGGGATGCTGAGTGAACAGGATGGCTTTCTTAGTGTTATTTGGGGTAGGAAGATGTGGGGAGGAGGTCCCCAGGCC
CTGTCCTGTGCTGGAGCTTAGTGATCTGAGGAACAGAGTCCACCTTTCTCGTCTCTGAGGACTGGGCCCAACCCTCCAGAGCCTTGAGAAAGAGGTGACCAGGACAGGCACCAGGTAGCCTCACTTCC
AAGGGTGTGGTCACCTTGTTGATGAGGATAGTGAACAGTGGCTCCTGCCCAGAATCTGCATCCTCAGATCTCCAGTAGCAAAAGAGGTTTGTGCCTTTCAGGACTCCATGTACAAGTGTCCCACTCTG
GAGCTCCCCGGCTTGCTGCATAAACAACTTGGTGTTTTCTGGGGAGTTGAGCCTCCCCACCCGGGCACCTTCCTCCCAGTCCCCACTGACCCCACGCCCCCAATACTCACCCTGCTGTCTTCCCATCC
CACTTTGTCCCCCCAGGTCCAGATTTTTAGATTGTCCATCTATTTCCATGCCATTAGGACCCCTCACCTGCACCCTGAGGGTACCACTTGCAGTAGGCTGAGTCATGCAGAGAGGCTGAGCCACCAGG
CGGCAACACATGCTACCATAAAGGGGCAGCCAGGCAGGGTTCTCCTCTGGGGAGGAGAAAGTACCGGGTGAGGATTGGACATGAGAAGGGGACTACCCTACGACCCCTCCTATCGGTGCCAGTGTCCT
GGACAGACAGACAGACAGACAGACAGACAGACAGACAGACACGAACACACACACACGTGTTCATACCATGACTGGTGAGAGTGAGGTCATGTGTACGGAATCCATCTTGCACTGCCGCTAGAGTGAGA
GTGGTGTGGGCCAAGAGGTGGTATCGAGGACCTCTGGAGGGAGAAGGGACATCAGTGGAGTGGTGTGTGTGGCAGGAAGGCACTGCAAGGCTGGCTCAGGCTGTGCCATTGCTGGGCTACCATGGAAA
CT

hide sequence

RefSeq Acc Id:

XM_006236778 ⟹ XP_006236840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,215,778 - 117,219,279 (-)	NCBI
mRatBN7.2	4	115,658,070 - 115,661,587 (-)	NCBI
Rnor_6.0	4	114,850,823 - 114,854,306 (-)	NCBI
Rnor_5.0	4	179,436,792 - 179,460,392 (-)	NCBI

Sequence:

show sequence

ATGGTGGCGGCGGATTCGGAGGGACTTGAGGATCGCGGCGTCTGGCAAGGCGCACTTGAGGGTT
GGGTGTGGGTTGCAGGTGTGACCTCTGACCTTGGCGTGGGCCTTCAGGATGTTCCGCCGCGAGCGCTCCATCCCACTTCGTGGCTCTGCCGCCGCCCTGTCTAACAACCTCAGTGTACTGCAGCTTCC
AGCCCGTGATCTCACGCATTTTGGGGTGGTTCATGGACCGAGCGCCCAGCTTCTCAGCGCTGCCCCTGAGGGTGTGCCCTTGGCCCAGCGCCAGCTCCACGTTAAAGAGGGCGCTGGAGTGAGTCCCC
CACTTATCACTCAGGTCCACTGGTGTGTCCTCCCCTTCAGAGTACTGCTGGTCCTCACCTCACACCGAGGGATACAGATGTACGAGTCTGACGGCTCCGTCATGGTTTACTGGCATGCCTTGGACTCA
GGAGATGCTTCTTCAGTACAGGCTATGTTTGCCCGAGGAATTGCTGCCAGCGTCCACTTCATCTGTGTGGGAACGTGGTCTGGTCGGATACTGGTCTTTGATATCCCCGCTAAGGGTCCCAATATTGT
ACTCAACGAGGAACTAGCTGGGCACCAGACACCAATCACAGATATCGCCACTGAGCGTGCCCAGGGACAGGATGGTGTTGCTGACATGGTGACAGCAGATGACTCAGGTGTCCTGTGTGTCTGGAGGT
CAGGACCTGAGTTCACCTTACTGACCCGAATAGCAGGATTCGGGGTCCCGTGCCCCTCTGTGCAGCTGTGGCAGGGGATCGTAGCAGCAGGCTATGGAAATGGACAAGTGCGTCTGTATGACGCTGGC
ACAGGAGCCCTCCACATCCAGATCAGTGCCCACGCCCGGACCATCTCTGCCCTGGACCTAGCTCCAGAGGTGGGCAAGCTGCTGTCTGCAGCTGAGGATACCTTTGTACACATCTGGAAGCTGAACAG
AAACCCAGAGAGTGGCTCCATTGAGGTGGAACACTGCCATGGCGAATGCATTTCTGACACGCAGGTGTGCGGTGCTCGGTTCTGTGACCCAGGGGGCAGCTCCTTTGCTGTGACAGGCTATGACCTTG
CTGAGATCCTGAGATTTGGCAGTGTCTGAGAGTGGAGCAGCGGTCCCTTCTCCCTTGATATTTATAAAGTATTCCCTCCACCAA

hide sequence

RefSeq Acc Id:

XM_006236780 ⟹ XP_006236842

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,215,778 - 117,219,317 (-)	NCBI
mRatBN7.2	4	115,658,070 - 115,661,598 (-)	NCBI
Rnor_6.0	4	114,850,823 - 114,854,325 (-)	NCBI
Rnor_5.0	4	179,436,792 - 179,460,392 (-)	NCBI

Sequence:

show sequence

GCGTCCGTGCGTCGTCTCTATGGTGGCGGCGGATTCGGAGGGACTTGAGGATCGCGGCGTCTGGCAAGGCGCACTTGAGGGTTGGGTGTGGGTTGCAGGATGTTCCGCCGCGAGCGCTCCATCCCACT
TCGTGGCTCTGCCGCCGCCCTGTCTAACAACCTCAGTGTACTGCAGCTTCCAGCCCGTGATCTCACGCATTTTGGGGTGGTTCATGGACCGAGCGCCCAGCTTCTCAGCGCTGCCCCTGAGGGTGTGC
CCTTGGCCCAGCGCCAGCTCCACGTTAAAGAGGGCGCTGGAGTGAGTCCCCCACTTATCACTCAGGTCCACTGGTGTGTCCTCCCCTTCAGAGTACTGCTGGTCCTCACCTCACACCGAGGGATACAG
ATGTACGAGTCTGACGGCTCCGTCATGGTTTACTGGCATGCCTTGGACTCAGGAGATGCTTCTTCAGTACAGGCTATGTTTGCCCGAGGAATTGCTGCCAGCGTCCACTTCATCTGTGTGGGAACGTG
GTCTGGTCGGATACTGGTCTTTGATATCCCCGCTAAGGGTCCCAATATTGTACTCAACGAGGAACTAGCTGGGCACCAGACACCAATCACAGATATCGCCACTGAGCGTGCCCAGGGACAGGATGGTG
TTGCTGACATGGTGACAGCAGATGACTCAGGTGTCCTGTGTGTCTGGAGGTCAGGACCTGAGTTCACCTTACTGACCCGAATAGCAGGATTCGGGGTCCCGTGCCCCTCTGTGCAGCTGTGGCAGGGG
ATCGTAGCAGCAGGCTATGGAAATGGACAAGTGCGTCTGTATGACGCTGGCACAGGAGCCCTCCACATCCAGATCAGTGCCCACGCCCGGACCATCTCTGCCCTGGACCTAGCTCCAGAGGTGGGCAA
GCTGCTGTCTGCAGCTGAGGATACCTTTGTACACATCTGGAAGCTGAACAGAAACCCAGAGAGTGGCTCCATTGAGGTGGAACACTGCCATGGCGAATGCATTTCTGACACGCAGGTGTGCGGTGCTC
GGTTCTGTGACCCAGGGGGCAGCTCCTTTGCTGTGACAGGCTATGACCTTGCTGAGATCCTGAGATTTGGCAGTGTCTGAGAGTGGAGCAGCGGTCCCTTCTCCCTTGATATTTATAAAGTATTCCCT
CCACCAA

hide sequence

RefSeq Acc Id:

XM_006236781 ⟹ XP_006236843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,215,778 - 117,236,456 (-)	NCBI
mRatBN7.2	4	115,658,070 - 115,677,979 (-)	NCBI
Rnor_6.0	4	114,850,823 - 114,871,989 (-)	NCBI
Rnor_5.0	4	179,436,792 - 179,460,392 (-)	NCBI

Sequence:

show sequence

CAAGCATGATGGGCTGAGCTCAGATCCCCAGAACCCACACAAGACCTGGGCATGGCTGTGCGCA
TCTGTAAAGTAGTGTTGGAGGTGAAGGCAGACAGATCTGGAGCTTGCTGGGCACCCAGCCTAACTGAGGGTGGAGGGCATTCTGATTAAGGAGACATTCTGATGTTGGCCTCTGGAGTATGCACACAC
CCACGCATGCACGCACGCATGCACACTATGATTAGTGTATTACTTCCACCCATAAGTGACGCTGAGCCCGAGTCTGACACAAGCCGAGCTATAGAGCTATACAGAAGCATGCTCTTGCCACAGGATTC
CTGGGCTCCTGACAGCATCCCTGGTCCTGGACTCTGCACGTTCCCTAAGCAGAAAGACAGTCCCTGATTTCTAATCCATTTTCCTCCTCAGCAATATTGAATACTGCTAAGCTATCTACAATAGCGGA
CGGAGTACTCAGTATCTGGTAACTAAGGAAGTCTTGGAGAATTTTCTGAACAGGGACATACACAGACTGGAGGTGAGGTAAGGAGAGCAGGTGAGGATGAGAAGCCACTTTACTGGATCCTTCTGTCA
TTTCTATACTGTCTCTACCAGCACCTCAGTATCCTTCAATATTCAAATACTTTCCAGTCTCATGTTTCCAAACTTTGATCCTGGGCTAACCCTCTCTTCTACTCTCTCTGATCCTACCCAAGCAGGGG
CTGGTTTGAAACTTAGGCAGTCTGACGACAGAGCCAAAGTGACTCTGAAAGCACCACCCATGAAGAACAAATGTGCACACGGCCTCCCAGAGTCCAACAGGGAAAGGTCTGCTCCCTCGTGGGGGACG
CTGACTAGAAGCTCAAATGAACACAGCAATATGTCATGCACGGAGCTTTTGGTCCTGGTCCTACTCCAATACGTGCCTTACAGAGATGGGAGAGCATCCTAAATAGGCTTTCTTCACCTGTCCAGCTC
CTTATCCCCAGAAATGTCTGCAGCATACTCCCAATCTGACTGGAGCTCTCTCCACTCTCAAAGTCGCCCTCACTCCAGCAAGTACCCAGGGATTTCCAGGTCCACCTCTAAGATCCAGAAAAGGAGGC
TGCAGTTACACCGTCTCCCTCTTATCCAGTCCTGAAGAGCAGCAACCCTCTCACTGACAGAGTACCACTTGTTTAGTTTCCAAGCAGCTTCCAGCTTAGCTCTGTCCCATAAATCAACCAGCAAGATC
CTGGCACTAGGACCCAGTGGGCCGGGAGCACTGAGACTGCGCTCTACTGAGGTAGATGCACCATTTCACAACTTCAGCAAAAGCCAAGGCAGCCAACAAAGGCTCAGCCACCTCGGCTGAGCCTCTGC
CTCTTGCCGCTCGGGCAGCTCACCAGCCACTCCTCTGAAACAGATCATGCCATCCTTTCTTTTTAAAACCCACGTCATCACTGGATCATAATGGAAATCAATCTCCTCAAACACCATGCAAAGGCGTA
TCCATAGCAACCCCAAAAGGAAGGACACAGAGATGCTCCAGTGGCTGCAGCAAAAAAAGGATGTTCCGCCGCGAGCGCTCCATCCCACTTCGTGGCTCTGCCGCCGCCCTGTCTAACAACCTCAGTGT
ACTGCAGCTTCCAGCCCGTGATCTCACGCATTTTGGGGTGGTTCATGGACCGAGCGCCCAGCTTCTCAGCGCTGCCCCTGAGGGTGTGCCCTTGGCCCAGCGCCAGCTCCACGTTAAAGAGGGCGCTG
GAGTGAGTCCCCCACTTATCACTCAGGTCCACTGGTGTGTCCTCCCCTTCAGAGTACTGCTGGTCCTCACCTCACACCGAGGGATACAGATGTACGAGTCTGACGGCTCCGTCATGGTTTACTGGCAT
GCCTTGGACTCAGGAGATGCTTCTTCAGTACAGGCTATGTTTGCCCGAGGAATTGCTGCCAGCGTCCACTTCATCTGTGTGGGAACGTGGTCTGGTCGGATACTGGTCTTTGATATCCCCGCTAAGGG
TCCCAATATTGTACTCAACGAGGAACTAGCTGGGCACCAGACACCAATCACAGATATCGCCACTGAGCGTGCCCAGGGACAGGATGGTGTTGCTGACATGGTGACAGCAGATGACTCAGGTGTCCTGT
GTGTCTGGAGGTCAGGACCTGAGTTCACCTTACTGACCCGAATAGCAGGATTCGGGGTCCCGTGCCCCTCTGTGCAGCTGTGGCAGGGGATCGTAGCAGCAGGCTATGGAAATGGACAAGTGCGTCTG
TATGACGCTGGCACAGGAGCCCTCCACATCCAGATCAGTGCCCACGCCCGGACCATCTCTGCCCTGGACCTAGCTCCAGAGGTGGGCAAGCTGCTGTCTGCAGCTGAGGATACCTTTGTACACATCTG
GAAGCTGAACAGAAACCCAGAGAGTGGCTCCATTGAGGTGGAACACTGCCATGGCGAATGCATTTCTGACACGCAGGTGTGCGGTGCTCGGTTCTGTGACCCAGGGGGCAGCTCCTTTGCTGTGACAG
GCTATGACCTTGCTGAGATCCTGAGATTTGGCAGTGTCTGAGAGTGGAGCAGCGGTCCCTTCTCCCTTGATATTTATAAAGTATTCCCTCCACCAA

hide sequence

RefSeq Acc Id:

XM_039108151 ⟹ XP_038964079

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,215,778 - 117,219,283 (-)	NCBI
mRatBN7.2	4	115,658,070 - 115,661,541 (-)	NCBI

RefSeq Acc Id:

XM_063286524 ⟹ XP_063142594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,215,778 - 117,219,266 (-)	NCBI


Protein RefSeqs	NP_001102715	(Get FASTA)	NCBI Sequence Viewer
	XP_006236840	(Get FASTA)	NCBI Sequence Viewer
	XP_006236842	(Get FASTA)	NCBI Sequence Viewer
	XP_006236843	(Get FASTA)	NCBI Sequence Viewer
	XP_038964079	(Get FASTA)	NCBI Sequence Viewer
	XP_063142594	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3ZX63	(Get FASTA)	NCBI Sequence Viewer
	EDL91128	(Get FASTA)	NCBI Sequence Viewer
	EDL91129	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013128.3
	ENSRNOP00055016851
	ENSRNOP00060002593
	ENSRNOP00065020626

RefSeq Acc Id:

NP_001102715 ⟸ NM_001109245

- UniProtKB:

D3ZX63 (UniProtKB/TrEMBL), A6IAL0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFRRERSIPLRGSAAALSNNLSVLQLPARDLTHFGVVHGPSAQLLSAAPEGVPLAQRQLHVKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASSVQAMFARGIAA
SVHFICVGTWSGRILVFDIPAKGPNIVLNEELAGHQTPITDIATERAQGQDGVADMVTADDSGVLCVWRSGPEFTLLTRIAGFGVPCPSVQLWQGIVAAGYGNGQVRLYDAGTGALHIQISAHARTIS
ALDLAPEVGKLLSAAEDTFVHIWKLNRNPESGSIEVEHCHGECISDTQVCGARFCDPGGSSFAVTGYDLAEILRFGSV

hide sequence

RefSeq Acc Id:	XP_006236843 ⟸ XM_006236781
- Peptide Label:	isoform X1
- UniProtKB:	D3ZX63 (UniProtKB/TrEMBL), A6IAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRRERSIPLRGSAAALSNNLSVLQLPARDLTHFGVVHGPSAQLLSAAPEGVPLAQRQLHVKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASSVQAMFARGIAA SVHFICVGTWSGRILVFDIPAKGPNIVLNEELAGHQTPITDIATERAQGQDGVADMVTADDSGVLCVWRSGPEFTLLTRIAGFGVPCPSVQLWQGIVAAGYGNGQVRLYDAGTGALHIQISAHARTIS ALDLAPEVGKLLSAAEDTFVHIWKLNRNPESGSIEVEHCHGECISDTQVCGARFCDPGGSSFAVTGYDLAEILRFGSV hide sequence

RefSeq Acc Id:	XP_006236842 ⟸ XM_006236780
- Peptide Label:	isoform X1
- UniProtKB:	D3ZX63 (UniProtKB/TrEMBL), A6IAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRRERSIPLRGSAAALSNNLSVLQLPARDLTHFGVVHGPSAQLLSAAPEGVPLAQRQLHVKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASSVQAMFARGIAA SVHFICVGTWSGRILVFDIPAKGPNIVLNEELAGHQTPITDIATERAQGQDGVADMVTADDSGVLCVWRSGPEFTLLTRIAGFGVPCPSVQLWQGIVAAGYGNGQVRLYDAGTGALHIQISAHARTIS ALDLAPEVGKLLSAAEDTFVHIWKLNRNPESGSIEVEHCHGECISDTQVCGARFCDPGGSSFAVTGYDLAEILRFGSV hide sequence

RefSeq Acc Id:	XP_006236840 ⟸ XM_006236778
- Peptide Label:	isoform X1
- UniProtKB:	D3ZX63 (UniProtKB/TrEMBL), A6IAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRRERSIPLRGSAAALSNNLSVLQLPARDLTHFGVVHGPSAQLLSAAPEGVPLAQRQLHVKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASSVQAMFARGIAA SVHFICVGTWSGRILVFDIPAKGPNIVLNEELAGHQTPITDIATERAQGQDGVADMVTADDSGVLCVWRSGPEFTLLTRIAGFGVPCPSVQLWQGIVAAGYGNGQVRLYDAGTGALHIQISAHARTIS ALDLAPEVGKLLSAAEDTFVHIWKLNRNPESGSIEVEHCHGECISDTQVCGARFCDPGGSSFAVTGYDLAEILRFGSV hide sequence

RefSeq Acc Id:	XP_038964079 ⟸ XM_039108151
- Peptide Label:	isoform X1
- UniProtKB:	D3ZX63 (UniProtKB/TrEMBL), A6IAL0 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZX63-F1-model_v2	AlphaFold	D3ZX63	1-334	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-44018	BioCyc
Ensembl Genes	ENSRNOG00000009324	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00000060514	Ensembl
	ENSRNOG00055012269	UniProtKB/Swiss-Prot
	ENSRNOG00060002367	UniProtKB/Swiss-Prot
	ENSRNOG00065015803	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000013128.6	UniProtKB/Swiss-Prot
	ENSRNOT00055020876	UniProtKB/Swiss-Prot
	ENSRNOT00060003733	UniProtKB/Swiss-Prot
	ENSRNOT00065026247	UniProtKB/Swiss-Prot
Gene3D-CATH	YVTN repeat-like/Quinoprotein amine dehydrogenase	UniProtKB/Swiss-Prot
InterPro	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot
	WD40_rpt	UniProtKB/Swiss-Prot
	WDR54_beta_propeller	UniProtKB/Swiss-Prot
KEGG Report	rno:500226	UniProtKB/Swiss-Prot
NCBI Gene	500226	ENTREZGENE
Pfam	WDR54	UniProtKB/Swiss-Prot
PhenoGen	Wdr54	PhenoGen
PROSITE	WD_REPEATS_2	UniProtKB/Swiss-Prot
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000009324	RatGTEx
	ENSRNOG00000060514	RatGTEx
	ENSRNOG00055012269	RatGTEx
	ENSRNOG00060002367	RatGTEx
	ENSRNOG00065015803	RatGTEx
SMART	WD40	UniProtKB/Swiss-Prot
Superfamily-SCOP	WD40 repeat-like	UniProtKB/Swiss-Prot
UniProt	A6IAL0	ENTREZGENE
	D3ZX63	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	A6IAL0	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Wdr54	WD repeat domain 54	LOC103692166	WD repeat-containing protein 54	Data merged from RGD:9477816	737654	PROVISIONAL
2014-08-25	LOC103692166	WD repeat-containing protein 54			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-09-23	Wdr54	WD repeat domain 54	RGD1561494	similar to D3Mm3e	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1561494	similar to D3Mm3e	RGD1561494_predicted	similar to D3Mm3e (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1561494_predicted	similar to D3Mm3e (predicted)	LOC500226	similar to D3Mm3e	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500226	similar to D3Mm3e			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar