Symbol:
Srrm4
Name:
serine/arginine repetitive matrix 4
RGD ID:
1560213
Description:
Predicted to enable identical protein binding activity and mRNA binding activity. Predicted to be involved in mRNA processing; neuron maturation; and regulation of RNA splicing. Predicted to act upstream of or within regulation of alternative mRNA splicing, via spliceosome and sensory perception of sound. Predicted to be active in nucleus. Orthologous to human SRRM4 (serine/arginine repetitive matrix 4); PARTICIPATES IN spliceosome pathway; INTERACTS WITH bisphenol A; cadmium dichloride; dioxygen.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
LOC498189; RGD1560213; serine/arginine repetitive matrix protein 4; similar to RIKEN cDNA 1500001A10
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 12 45,659,729 - 45,819,643 (+) NCBI GRCr8 mRatBN7.2 12 39,998,975 - 40,158,897 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 12 39,999,488 - 40,155,725 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 12 41,174,282 - 41,331,031 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 12 41,788,111 - 41,944,866 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 12 40,847,885 - 41,005,387 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 12 45,726,192 - 45,884,644 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 12 45,727,112 - 45,882,548 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 12 47,542,208 - 47,700,492 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 12 41,216,421 - 41,373,052 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 12 41,639,982 - 41,795,400 (+) NCBI Celera Cytogenetic Map 12 q16 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Srrm4 Rat 2,2',4,4',5,5'-hexachlorobiphenyl multiple interactions ISO Srrm4 (Mus musculus) 6480464 [2 more ... CTD PMID:25510870 Srrm4 Rat 2,2',5,5'-tetrachlorobiphenyl multiple interactions ISO Srrm4 (Mus musculus) 6480464 [2 more ... CTD PMID:25510870 Srrm4 Rat 2,3',4,4',5-Pentachlorobiphenyl decreases expression ISO Srrm4 (Mus musculus) 6480464 2 more ... CTD PMID:31388691 Srrm4 Rat 4,4'-sulfonyldiphenol decreases expression ISO Srrm4 (Mus musculus) 6480464 bisphenol S results in decreased expression of SRRM4 mRNA CTD PMID:30951980 Srrm4 Rat 4,4'-sulfonyldiphenol affects methylation ISO Srrm4 (Mus musculus) 6480464 bisphenol S affects the methylation of SRRM4 exon and bisphenol S affects the methylation of SRRM4 gene CTD PMID:31683443 and PMID:33297965 Srrm4 Rat 4,4'-sulfonyldiphenol decreases methylation ISO Srrm4 (Mus musculus) 6480464 bisphenol S results in decreased methylation of SRRM4 promoter CTD PMID:33297965 Srrm4 Rat aflatoxin B1 increases expression ISO Srrm4 (Mus musculus) 6480464 Aflatoxin B1 results in increased expression of SRRM4 mRNA CTD PMID:19770486 Srrm4 Rat atrazine decreases expression ISO SRRM4 (Homo sapiens) 6480464 Atrazine results in decreased expression of SRRM4 mRNA CTD PMID:22378314 Srrm4 Rat benzo[a]pyrene increases methylation ISO SRRM4 (Homo sapiens) 6480464 Benzo(a)pyrene results in increased methylation of SRRM4 promoter CTD PMID:27901495 Srrm4 Rat benzo[b]fluoranthene increases expression ISO Srrm4 (Mus musculus) 6480464 benzo(b)fluoranthene results in increased expression of SRRM4 mRNA CTD PMID:26377693 Srrm4 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of SRRM4 mRNA CTD PMID:25181051 Srrm4 Rat bisphenol A decreases methylation ISO SRRM4 (Homo sapiens) 6480464 bisphenol A results in decreased methylation of SRRM4 gene CTD PMID:31601247 Srrm4 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of SRRM4 mRNA CTD PMID:30816183 and PMID:34947998 Srrm4 Rat bisphenol A increases expression ISO SRRM4 (Homo sapiens) 6480464 bisphenol A results in increased expression of SRRM4 mRNA CTD PMID:29275510 Srrm4 Rat bisphenol F decreases expression ISO Srrm4 (Mus musculus) 6480464 bisphenol F results in decreased expression of SRRM4 mRNA CTD PMID:30951980 and PMID:38685157 Srrm4 Rat cadmium dichloride increases expression EXP 6480464 Cadmium Chloride results in increased expression of SRRM4 mRNA CTD PMID:33453195 Srrm4 Rat carbon nanotube increases expression ISO Srrm4 (Mus musculus) 6480464 Nanotubes and Carbon analog results in increased expression of SRRM4 mRNA CTD PMID:25620056 Srrm4 Rat dibutyl phthalate increases expression ISO Srrm4 (Mus musculus) 6480464 Dibutyl Phthalate results in increased expression of SRRM4 mRNA CTD PMID:21266533 Srrm4 Rat dioxygen multiple interactions EXP 6480464 [Oxygen deficiency co-treated with Blood Glucose deficiency co-treated with Particulate Matter] results in decreased expression of SRRM4 mRNA CTD PMID:33729688 Srrm4 Rat dorsomorphin multiple interactions ISO SRRM4 (Homo sapiens) 6480464 [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ... CTD PMID:27188386 Srrm4 Rat entinostat decreases expression ISO SRRM4 (Homo sapiens) 6480464 entinostat results in decreased expression of SRRM4 mRNA CTD PMID:27188386 Srrm4 Rat epoxiconazole increases expression ISO Srrm4 (Mus musculus) 6480464 epoxiconazole results in increased expression of SRRM4 mRNA CTD PMID:35436446 Srrm4 Rat furan increases expression ISO Srrm4 (Mus musculus) 6480464 furan results in increased expression of SRRM4 mRNA CTD PMID:24183702 Srrm4 Rat glyphosate affects methylation EXP 6480464 Glyphosate affects the methylation of SRRM4 gene CTD PMID:35440735 Srrm4 Rat hydrogen cyanide decreases expression ISO Srrm4 (Mus musculus) 6480464 Hydrogen Cyanide results in decreased expression of SRRM4 mRNA CTD PMID:33914522 Srrm4 Rat inulin multiple interactions ISO Srrm4 (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of SRRM4 mRNA CTD PMID:36331819 Srrm4 Rat maneb multiple interactions ISO Srrm4 (Mus musculus) 6480464 [Maneb co-treated with Paraquat] results in decreased expression of SRRM4 mRNA CTD PMID:36117858 Srrm4 Rat methylmercury chloride increases expression ISO SRRM4 (Homo sapiens) 6480464 methylmercuric chloride results in increased expression of SRRM4 mRNA CTD PMID:28001369 Srrm4 Rat N,N-diethyl-m-toluamide multiple interactions EXP 6480464 [Permethrin co-treated with DEET] affects the methylation of SRRM4 gene CTD PMID:33148267 Srrm4 Rat paracetamol decreases expression ISO SRRM4 (Homo sapiens) 6480464 Acetaminophen results in decreased expression of SRRM4 mRNA CTD PMID:22230336 Srrm4 Rat paraquat multiple interactions ISO Srrm4 (Mus musculus) 6480464 [Maneb co-treated with Paraquat] results in decreased expression of SRRM4 mRNA CTD PMID:36117858 Srrm4 Rat PCB138 multiple interactions ISO Srrm4 (Mus musculus) 6480464 [2 more ... CTD PMID:25510870 Srrm4 Rat perfluorooctane-1-sulfonic acid multiple interactions ISO Srrm4 (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of SRRM4 mRNA CTD PMID:36331819 Srrm4 Rat permethrin multiple interactions EXP 6480464 [Permethrin co-treated with DEET] affects the methylation of SRRM4 gene CTD PMID:33148267 Srrm4 Rat potassium cyanide decreases expression ISO Srrm4 (Mus musculus) 6480464 Potassium Cyanide results in decreased expression of SRRM4 mRNA CTD PMID:33914522 Srrm4 Rat pregnenolone 16alpha-carbonitrile increases expression ISO Srrm4 (Mus musculus) 6480464 Pregnenolone Carbonitrile results in increased expression of SRRM4 mRNA CTD PMID:28903501 Srrm4 Rat resveratrol multiple interactions ISO SRRM4 (Homo sapiens) 6480464 [Plant Extracts co-treated with Resveratrol] results in decreased expression of SRRM4 mRNA CTD PMID:23557933 Srrm4 Rat SB 431542 multiple interactions ISO SRRM4 (Homo sapiens) 6480464 [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ... CTD PMID:27188386 Srrm4 Rat sodium arsenite increases expression ISO SRRM4 (Homo sapiens) 6480464 sodium arsenite results in increased expression of SRRM4 mRNA CTD PMID:29301061 Srrm4 Rat sodium arsenite decreases expression ISO Srrm4 (Mus musculus) 6480464 sodium arsenite results in decreased expression of SRRM4 mRNA CTD PMID:37682722 Srrm4 Rat sunitinib decreases expression ISO SRRM4 (Homo sapiens) 6480464 Sunitinib results in decreased expression of SRRM4 mRNA CTD PMID:31533062 Srrm4 Rat titanium dioxide decreases methylation ISO Srrm4 (Mus musculus) 6480464 titanium dioxide results in decreased methylation of SRRM4 gene CTD PMID:35295148 Srrm4 Rat trichostatin A increases expression ISO SRRM4 (Homo sapiens) 6480464 trichostatin A results in increased expression of SRRM4 mRNA CTD PMID:26272509 Srrm4 Rat trichostatin A multiple interactions ISO SRRM4 (Homo sapiens) 6480464 [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of SRRM4 mRNA CTD PMID:27188386 Srrm4 Rat triptonide increases expression ISO Srrm4 (Mus musculus) 6480464 triptonide results in increased expression of SRRM4 mRNA CTD PMID:33045310 Srrm4 Rat valproic acid affects expression ISO SRRM4 (Homo sapiens) 6480464 Valproic Acid affects the expression of SRRM4 mRNA CTD PMID:25979313 Srrm4 Rat valproic acid increases expression ISO SRRM4 (Homo sapiens) 6480464 Valproic Acid results in increased expression of SRRM4 mRNA CTD PMID:26272509 Srrm4 Rat valproic acid multiple interactions ISO SRRM4 (Homo sapiens) 6480464 [NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of SRRM4 mRNA CTD PMID:27188386 Srrm4 Rat vorinostat decreases expression ISO SRRM4 (Homo sapiens) 6480464 vorinostat results in decreased expression of SRRM4 mRNA CTD PMID:27188386
2,2',4,4',5,5'-hexachlorobiphenyl (ISO) 2,2',5,5'-tetrachlorobiphenyl (ISO) 2,3',4,4',5-Pentachlorobiphenyl (ISO) 4,4'-sulfonyldiphenol (ISO) aflatoxin B1 (ISO) atrazine (ISO) benzo[a]pyrene (ISO) benzo[b]fluoranthene (ISO) bisphenol A (EXP,ISO) bisphenol F (ISO) cadmium dichloride (EXP) carbon nanotube (ISO) dibutyl phthalate (ISO) dioxygen (EXP) dorsomorphin (ISO) entinostat (ISO) epoxiconazole (ISO) furan (ISO) glyphosate (EXP) hydrogen cyanide (ISO) inulin (ISO) maneb (ISO) methylmercury chloride (ISO) N,N-diethyl-m-toluamide (EXP) paracetamol (ISO) paraquat (ISO) PCB138 (ISO) perfluorooctane-1-sulfonic acid (ISO) permethrin (EXP) potassium cyanide (ISO) pregnenolone 16alpha-carbonitrile (ISO) resveratrol (ISO) SB 431542 (ISO) sodium arsenite (ISO) sunitinib (ISO) titanium dioxide (ISO) trichostatin A (ISO) triptonide (ISO) valproic acid (ISO) vorinostat (ISO)
Srrm4 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 12 45,659,729 - 45,819,643 (+) NCBI GRCr8 mRatBN7.2 12 39,998,975 - 40,158,897 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 12 39,999,488 - 40,155,725 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 12 41,174,282 - 41,331,031 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 12 41,788,111 - 41,944,866 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 12 40,847,885 - 41,005,387 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 12 45,726,192 - 45,884,644 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 12 45,727,112 - 45,882,548 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 12 47,542,208 - 47,700,492 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 12 41,216,421 - 41,373,052 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 12 41,639,982 - 41,795,400 (+) NCBI Celera Cytogenetic Map 12 q16 NCBI
SRRM4 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 12 118,981,541 - 119,163,051 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 12 118,981,541 - 119,163,051 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 12 119,419,346 - 119,600,856 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 12 117,903,779 - 118,085,240 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 12 119,052,537 - 119,234,002 (+) NCBI Celera Cytogenetic Map 12 q24.23 NCBI HuRef 12 116,428,321 - 116,608,974 (+) NCBI HuRef CHM1_1 12 119,387,098 - 119,568,687 (+) NCBI CHM1_1 T2T-CHM13v2.0 12 118,969,040 - 119,150,482 (+) NCBI T2T-CHM13v2.0
Srrm4 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 5 116,577,331 - 116,729,882 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 5 116,577,334 - 116,729,876 (-) Ensembl GRCm39 Ensembl GRCm38 5 116,439,268 - 116,592,562 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 5 116,439,275 - 116,591,817 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 5 116,889,281 - 117,041,826 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 5 116,702,549 - 116,852,547 (-) NCBI MGSCv36 mm8 Celera 5 113,536,567 - 113,684,442 (-) NCBI Celera Cytogenetic Map 5 F NCBI cM Map 5 56.45 NCBI
Srrm4 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955455 12,318,529 - 12,473,647 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955455 12,318,529 - 12,473,420 (-) NCBI ChiLan1.0 ChiLan1.0
SRRM4 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 10 127,047,133 - 127,228,862 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 12 127,043,512 - 127,225,241 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 12 116,561,412 - 116,743,153 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 12 119,939,573 - 120,117,175 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 12 120,060,023 - 120,117,181 (+) Ensembl panpan1.1 panPan2
SRRM4 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 26 15,049,612 - 15,324,454 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 26 15,057,392 - 15,318,325 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 26 15,177,057 - 15,329,853 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 26 15,440,190 - 15,592,771 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 26 15,314,003 - 15,592,771 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 26 15,410,106 - 15,562,626 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 26 15,477,027 - 15,630,084 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 26 15,518,798 - 15,671,889 (+) NCBI UU_Cfam_GSD_1.0
Srrm4 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405118 147,020,529 - 147,169,716 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936668 1,525,289 - 1,562,064 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936668 1,523,232 - 1,668,591 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SRRM4 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 33,657,143 - 33,816,798 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 14 33,653,542 - 33,818,859 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 35,558,401 - 36,024,731 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SRRM4 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 11 114,329,529 - 114,506,944 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 11 114,329,733 - 114,500,732 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666037 130,596,612 - 130,774,201 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Srrm4
.
Predicted Target Of
Count of predictions: 77 Count of miRNA genes: 67 Interacting mature miRNAs: 69 Transcripts: ENSRNOT00000001507 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
631560 Apr1 Acute phase response QTL 1 6.1 orosomucoid 1 amount (VT:0010541) plasma orosomucoid 1 level (CMO:0001467) 12 19144362 46669029 Rat 8552964 Pigfal17 Plasma insulin-like growth factor 1 level QTL 17 3.5 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 12 5564495 46669029 Rat 8693635 Alc28 Alcohol consumption QTL 28 2.7 0.439 drinking behavior trait (VT:0001422) calculated ethanol drink intake rate (CMO:0001615) 12 23081340 44726024 Rat 7411641 Foco19 Food consumption QTL 19 27.7 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 5564495 46669029 Rat 7411643 Foco20 Food consumption QTL 20 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 20328819 46669029 Rat 61324 Eae5 Experimental allergic encephalomyelitis QTL 5 14 nervous system integrity trait (VT:0010566) percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402) 12 19610870 46669029 Rat 5684888 Pia42 Pristane induced arthritis QTL 42 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 12 19610870 42828880 Rat 1549912 Bp268 Blood pressure QTL 268 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 10 13182736 46669029 Rat 2302060 Pia37 Pristane induced arthritis QTL 37 6.1 0.001 blood immunoglobulin amount (VT:0002460) serum immunoglobulin G1 level (CMO:0002115) 12 13198157 46669029 Rat 9590147 Scort7 Serum corticosterone level QTL 7 13.61 0.001 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 12 1 42110980 Rat 1641928 Alcrsp5 Alcohol response QTL 5 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 12 12812385 46669029 Rat 1300162 Bp188 Blood pressure QTL 188 3.19 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 12 32103174 45899022 Rat 8552912 Pigfal6 Plasma insulin-like growth factor 1 level QTL 6 5 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 12 5564498 46669029 Rat 1549829 Scl48 Serum cholesterol level QTL 48 5 blood cholesterol amount (VT:0000180) serum total cholesterol level (CMO:0000363) 12 9603277 46669029 Rat 10059594 Kidm46 Kidney mass QTL 46 3.79 0.025 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 12 6107579 46669029 Rat 9590086 Insglur6 Insulin/glucose ratio QTL 6 18.97 0.001 blood insulin amount (VT:0001560) calculated plasma insulin level (CMO:0002170) 12 1 42110980 Rat 8552918 Pigfal7 Plasma insulin-like growth factor 1 level QTL 7 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 12 5564495 46669029 Rat 737822 Alc10 Alcohol consumption QTL 10 2.2 consumption behavior trait (VT:0002069) ethanol drink intake rate (CMO:0001407) 12 19610870 40218516 Rat 1549902 Bp269 Blood pressure QTL 269 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 12 13182736 46669029 Rat 1600386 Calcic2 Intracellular calcium level QTL 2 0.001 platelet physiology trait (VT:0005464) platelet intracellular calcium level (CMO:0000922) 12 28064433 46669029 Rat 1302792 Scl21 Serum cholesterol level QTL 21 3.8 0.0011 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 12 7196730 46669029 Rat 61404 Bw120 Body weight QTL 120 5.1 body mass (VT:0001259) body mass index (BMI) (CMO:0000105) 12 12351619 46669029 Rat 1556747 Calcic1 Intracellular calcium level QTL 1 3.6 platelet calcium amount (VT:0010500) platelet intracellular calcium level (CMO:0000922) 12 28064433 40130419 Rat 1300175 Cm5 Cardiac mass QTL 5 3.78 heart mass (VT:0007028) heart left ventricle weight to body weight ratio (CMO:0000530) 12 28064433 45899022 Rat 8693658 Alc33 Alcohol consumption QTL 33 2.1 0.68 drinking behavior trait (VT:0001422) calculated ethanol drink intake rate (CMO:0001615) 12 23081340 43551788 Rat 1331787 Rf41 Renal function QTL 41 2.998 kidney blood vessel physiology trait (VT:0100012) absolute change in renal blood flow rate (CMO:0001168) 12 28064557 40218380 Rat 2293699 Bss49 Bone structure and strength QTL 49 5.61 0.0001 lumbar vertebra size trait (VT:0010518) lumbar vertebra trabecular cross-sectional area (CMO:0001692) 12 10474137 46669029 Rat 1331761 Bp218 Blood pressure QTL 218 2.973 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 12 11073825 45055165 Rat 634351 Apr5 Acute phase response QTL 5 6.7 blood interleukin-6 amount (VT:0008595) plasma interleukin-6 level (CMO:0001927) 12 1 44503507 Rat 8694179 Bw150 Body weight QTL 150 2.9 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 12 1 42110980 Rat 634350 Apr4 Acute phase response QTL 4 6 orosomucoid 1 amount (VT:0010541) plasma orosomucoid 1 level (CMO:0001467) 12 1172005 46172005 Rat 7411545 Bw128 Body weight QTL 128 5.2 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 12 1 42110980 Rat 7411547 Bw129 Body weight QTL 129 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 6 5564495 46669029 Rat 737979 Pia22 Pristane induced arthritis QTL 22 53.1 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 12 1 44465750 Rat 2303569 Gluco44 Glucose level QTL 44 2 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 12 12812385 46669029 Rat 7411586 Foco5 Food consumption QTL 5 5.4 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 1 42110980 Rat 2303575 Insul14 Insulin level QTL 14 4 blood insulin amount (VT:0001560) blood insulin level (CMO:0000349) 12 1 42450532 Rat 7411588 Foco6 Food consumption QTL 6 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 5564495 46669029 Rat 2302042 Pia38 Pristane induced arthritis QTL 38 3.5 0.001 blood immunoglobulin amount (VT:0002460) serum immunoglobulin G1 level (CMO:0002115) 12 1 44503507 Rat 2300186 Bmd59 Bone mineral density QTL 59 7.1 0.0001 lumbar vertebra mineral mass (VT:0010511) volumetric bone mineral density (CMO:0001553) 12 10474137 46669029 Rat 7411595 Foco9 Food consumption QTL 9 4 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 1 42110980 Rat 7411597 Foco10 Food consumption QTL 10 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 5564495 46669029 Rat 7411660 Foco28 Food consumption QTL 28 10.9 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 1 42110980 Rat
BF387061
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 12 40,066,673 - 40,066,833 (+) MAPPER mRatBN7.2 Rnor_6.0 12 45,794,974 - 45,795,133 NCBI Rnor6.0 Rnor_5.0 12 47,607,623 - 47,607,782 UniSTS Rnor5.0 RGSC_v3.4 12 41,286,531 - 41,286,690 UniSTS RGSC3.4 Celera 12 41,706,595 - 41,706,754 UniSTS RH 3.4 Map 12 761.31 UniSTS Cytogenetic Map 12 q16 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
8
9
49
113
47
43
23
6
23
6
152
78
93
37
53
20
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000001507 ⟹ ENSRNOP00000001507
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 12 39,999,488 - 40,155,725 (+) Ensembl Rnor_6.0 Ensembl 12 45,727,112 - 45,882,548 (+) Ensembl
RefSeq Acc Id:
NM_001346306 ⟹ NP_001333235
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 12 45,659,729 - 45,816,475 (+) NCBI mRatBN7.2 12 39,998,975 - 40,155,725 (+) NCBI
RefSeq Acc Id:
XM_039089708 ⟹ XP_038945636
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 12 45,659,799 - 45,819,643 (+) NCBI mRatBN7.2 12 39,999,045 - 40,158,897 (+) NCBI
RefSeq Acc Id:
XR_005491668
Type:
NON-CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 12 45,659,799 - 45,819,643 (+) NCBI mRatBN7.2 12 39,999,045 - 40,158,897 (+) NCBI
Ensembl Acc Id:
ENSRNOP00000001507 ⟸ ENSRNOT00000001507
RefSeq Acc Id:
NP_001333235 ⟸ NM_001346306
- UniProtKB:
F1M2T7 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038945636 ⟸ XM_039089708
- Peptide Label:
isoform X1
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2010-02-12
Srrm4
serine/arginine repetitive matrix 4
RGD1560213
similar to RIKEN cDNA 1500001A10
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2008-04-30
RGD1560213
similar to RIKEN cDNA 1500001A10
RGD1560213_predicted
similar to RIKEN cDNA 1500001A10 (predicted)
'predicted' is removed
2292626 APPROVED
2006-03-07
RGD1560213_predicted
similar to RIKEN cDNA 1500001A10 (predicted)
LOC498189
similar to RIKEN cDNA 1500001A10
Symbol and Name status set to approved
1299863 APPROVED
2006-02-09
LOC498189
similar to RIKEN cDNA 1500001A10
Symbol and Name status set to provisional
70820 PROVISIONAL
