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Gene: Dmrta1 (DMRT-like family A1) Rattus norvegicus

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Symbol:

Dmrta1

Name:

DMRT-like family A1

RGD ID:

1309796

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II and sex differentiation. Predicted to act upstream of or within male mating behavior and ovarian follicle development. Predicted to be active in nucleus. Orthologous to human DMRTA1 (DMRT like family A1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

doublesex and mab-3 related transcription factor like family A1; doublesex- and mab-3-related transcription factor A1; LOC313352

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DMRTA1 (DMRT like family A1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Dmrta1 (doublesex and mab-3 related transcription factor like family A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dmrta1 (DMRT like family A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DMRTA1 (DMRT like family A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DMRTA1 (DMRT like family A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dmrta1 (DMRT like family A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DMRTA1 (DMRT like family A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dmrta1 (DMRT like family A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GAL3ST3 (galactose-3-O-sulfotransferase 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	DMRTA1 (DMRT like family A1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dmrta1 (doublesex and mab-3 related transcription factor like family A1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dmd-5	Alliance	DIOPT (OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	dmrt99B	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	dmrta1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	109,531,704 - 109,538,244 (+)	NCBI		GRCr8
mRatBN7.2	5	104,415,893 - 104,422,433 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	104,415,893 - 104,422,433 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	106,855,751 - 106,862,301 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	108,585,360 - 108,591,908 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	108,649,792 - 108,656,328 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	108,278,217 - 108,284,757 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	108,278,217 - 108,284,757 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	112,243,272 - 112,249,812 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	109,337,767 - 109,344,307 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	109,104,948 - 109,347,367 (+)	NCBI
Celera	5	103,121,749 - 103,128,297 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Dmrta1	Rat	schizophrenia		ISO	DMRTA1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106 and PMID:30208311

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Dmrta1	Rat	17beta-estradiol	decreases expression	ISO	DMRTA1 (Homo sapiens)	6480464	Estradiol results in decreased expression of DMRTA1 mRNA	CTD	PMID:31614463
Dmrta1	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Dmrta1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of DMRTA1 mRNA	CTD	PMID:24058054
Dmrta1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of DMRTA1 mRNA	CTD	PMID:32109520
Dmrta1	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Dmrta1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to DMRTA1 promoter]	CTD	PMID:19654925
Dmrta1	Rat	2,3,7,8-Tetrachlorodibenzofuran	increases expression	EXP		6480464	2 more ...	CTD	PMID:32109520
Dmrta1	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	Dmrta1 (Mus musculus)	6480464	bisphenol S affects the methylation of DMRTA1 gene	CTD	PMID:31683443
Dmrta1	Rat	acrylamide	decreases expression	ISO	DMRTA1 (Homo sapiens)	6480464	Acrylamide results in decreased expression of DMRTA1 mRNA	CTD	PMID:32763439
Dmrta1	Rat	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of DMRTA1 mRNA	CTD	PMID:23630614
Dmrta1	Rat	aflatoxin B1	decreases methylation	ISO	DMRTA1 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of DMRTA1 gene	CTD	PMID:27153756
Dmrta1	Rat	benzo[a]pyrene	decreases methylation	ISO	DMRTA1 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of DMRTA1 exon	CTD	PMID:27901495
Dmrta1	Rat	bis(2-ethylhexyl) phthalate	increases methylation	ISO	Dmrta1 (Mus musculus)	6480464	Diethylhexyl Phthalate results in increased methylation of DMRTA1 intron	CTD	PMID:32864567
Dmrta1	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	Dmrta1 (Mus musculus)	6480464	Diethylhexyl Phthalate results in decreased expression of DMRTA1 mRNA	CTD	PMID:34319233
Dmrta1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of DMRTA1 mRNA	CTD	PMID:25181051
Dmrta1	Rat	cisplatin	multiple interactions	ISO	DMRTA1 (Homo sapiens)	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of DMRTA1 mRNA	CTD	PMID:27392435
Dmrta1	Rat	cisplatin	increases expression	ISO	DMRTA1 (Homo sapiens)	6480464	Cisplatin results in increased expression of DMRTA1 mRNA	CTD	PMID:27392435
Dmrta1	Rat	cypermethrin	increases expression	ISO	Dmrta1 (Mus musculus)	6480464	cypermethrin results in increased expression of DMRTA1 mRNA	CTD	PMID:29020013
Dmrta1	Rat	dextran sulfate	decreases expression	ISO	Dmrta1 (Mus musculus)	6480464	Dextran Sulfate results in decreased expression of DMRTA1 mRNA	CTD	PMID:35093514
Dmrta1	Rat	dibutyl phthalate	decreases expression	ISO	Dmrta1 (Mus musculus)	6480464	Dibutyl Phthalate results in decreased expression of DMRTA1 mRNA	CTD	PMID:21266533
Dmrta1	Rat	dibutyl phthalate	increases expression	EXP		6480464	Dibutyl Phthalate results in increased expression of DMRTA1 mRNA	CTD	PMID:21266533
Dmrta1	Rat	N-nitrosodiethylamine	multiple interactions	ISO	Dmrta1 (Mus musculus)	6480464	[Diethylnitrosamine co-treated with Phenobarbital] results in decreased expression of DMRTA1 mRNA	CTD	PMID:24535843
Dmrta1	Rat	N-nitrosodiethylamine	decreases expression	ISO	Dmrta1 (Mus musculus)	6480464	Diethylnitrosamine results in decreased expression of DMRTA1 mRNA	CTD	PMID:24535843
Dmrta1	Rat	paraquat	increases expression	ISO	DMRTA1 (Homo sapiens)	6480464	Paraquat results in increased expression of DMRTA1 mRNA	CTD	PMID:35182771
Dmrta1	Rat	phenobarbital	multiple interactions	ISO	Dmrta1 (Mus musculus)	6480464	[Diethylnitrosamine co-treated with Phenobarbital] results in decreased expression of DMRTA1 mRNA	CTD	PMID:24535843
Dmrta1	Rat	rotenone	decreases expression	ISO	DMRTA1 (Homo sapiens)	6480464	Rotenone results in decreased expression of DMRTA1 mRNA	CTD	PMID:33512557
Dmrta1	Rat	silicon dioxide	increases expression	ISO	DMRTA1 (Homo sapiens)	6480464	Silicon Dioxide analog results in increased expression of DMRTA1 mRNA	CTD	PMID:23806026 and PMID:25895662
Dmrta1	Rat	sodium arsenite	decreases expression	ISO	DMRTA1 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of DMRTA1 mRNA	CTD	PMID:34032870
Dmrta1	Rat	sunitinib	increases expression	ISO	DMRTA1 (Homo sapiens)	6480464	Sunitinib results in increased expression of DMRTA1 mRNA	CTD	PMID:31533062
Dmrta1	Rat	temozolomide	increases expression	ISO	DMRTA1 (Homo sapiens)	6480464	Temozolomide results in increased expression of DMRTA1 mRNA	CTD	PMID:31758290
Dmrta1	Rat	trichloroethene	decreases expression	EXP		6480464	Trichloroethylene results in decreased expression of DMRTA1 mRNA	CTD	PMID:33387578
Dmrta1	Rat	trichostatin A	decreases expression	ISO	DMRTA1 (Homo sapiens)	6480464	trichostatin A results in decreased expression of DMRTA1 mRNA	CTD	PMID:24935251
Dmrta1	Rat	triptonide	increases expression	ISO	Dmrta1 (Mus musculus)	6480464	triptonide results in increased expression of DMRTA1 mRNA	CTD	PMID:33045310
Dmrta1	Rat	XL147	multiple interactions	ISO	Dmrta1 (Mus musculus)	6480464	[N-nitroso-tris-chloroethylurea co-treated with XL147] results in decreased expression of DMRTA1 mRNA	CTD	PMID:27935865

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Dmrta1	Rat	male mating behavior	acts_upstream_of_or_within	ISO	Dmrta1 (Mus musculus)	1624291	MGI:3699123 PMID:16982677	RGD	PMID:16982677
Dmrta1	Rat	male mating behavior	acts_upstream_of_or_within	IEA	UniProtKB:Q8CFG4 and ensembl:ENSMUSP00000057488	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Dmrta1	Rat	ovarian follicle development	acts_upstream_of_or_within	IEA	UniProtKB:Q8CFG4 and ensembl:ENSMUSP00000057488	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Dmrta1	Rat	ovarian follicle development	acts_upstream_of_or_within	ISO	Dmrta1 (Mus musculus)	1624291	MGI:3699123 PMID:16982677	RGD	PMID:16982677
Dmrta1	Rat	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR001275 more ...	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Dmrta1	Rat	regulation of transcription by RNA polymerase II	involved_in	IBA	FB:FBgn0000504 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Dmrta1	Rat	sex differentiation	involved_in	IBA	FB:FBgn0000504 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Dmrta1	Rat	nucleus	located_in	IEA	InterPro:IPR026607	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Dmrta1	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Dmrta1	Rat	nucleus	located_in	IEA	UniRule:UR000414163	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Dmrta1	Rat	nucleus	is_active_in	IBA	MGI:1354733 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Dmrta1	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Dmrta1	Rat	DNA binding	enables	IEA	UniRule:UR000414163	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Dmrta1	Rat	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Dmrta1	Rat	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IBA	FB:FBgn0000504 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Dmrta1	Rat	identical protein binding	enables	ISO	Dmrta1 (Mus musculus)	1624291	PR:Q8CFG4 PMID:17605809	RGD	PMID:17605809
Dmrta1	Rat	identical protein binding	enables	IEA	UniProtKB:Q8CFG4 and ensembl:ENSMUSP00000057488	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Dmrta1	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Dmrta1	Rat	protein binding	enables	ISO	DMRTA1 (Homo sapiens)	1624291	UniProtKB:O60333-2 more ...	RGD	PMID:32814053
Dmrta1	Rat	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IBA	PANTHER:PTN000960547 and WB:WBGene00003100	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Dmrta1	Rat	sequence-specific DNA binding	enables	ISO	Dmrta1 (Mus musculus)	1624291	PMID:17605809	RGD	PMID:17605809
Dmrta1	Rat	sequence-specific DNA binding	enables	IEA	InterPro:IPR001275 and InterPro:IPR036407	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Dmrta1	Rat	sequence-specific DNA binding	enables	IEA	ARBA:ARBA00026779	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Dmrta1	Rat	sequence-specific DNA binding	enables	IEA	UniProtKB:Q8CFG4 and ensembl:ENSMUSP00000057488	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Dmrta1	Rat	sequence-specific double-stranded DNA binding	enables	ISO	DMRTA1 (Homo sapiens)	1624291	PMID:28473536	RGD	PMID:28473536
Dmrta1	Rat	sequence-specific double-stranded DNA binding	enables	IEA	UniProtKB:Q5VZB9 and ensembl:ENSP00000319651	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:16982677	PMID:17605809	PMID:23679989

Dmrta1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	109,531,704 - 109,538,244 (+)	NCBI		GRCr8
mRatBN7.2	5	104,415,893 - 104,422,433 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	104,415,893 - 104,422,433 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	106,855,751 - 106,862,301 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	108,585,360 - 108,591,908 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	108,649,792 - 108,656,328 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	108,278,217 - 108,284,757 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	108,278,217 - 108,284,757 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	112,243,272 - 112,249,812 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	109,337,767 - 109,344,307 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	109,104,948 - 109,347,367 (+)	NCBI
Celera	5	103,121,749 - 103,128,297 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI

DMRTA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	22,446,824 - 22,455,740 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	22,446,824 - 22,455,740 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	22,446,823 - 22,455,739 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	22,436,840 - 22,442,472 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	22,436,839 - 22,442,472	NCBI
Celera	9	22,385,141 - 22,390,773 (+)	NCBI		Celera
Cytogenetic Map	9	p21.3	NCBI
HuRef	9	22,410,720 - 22,416,354 (+)	NCBI		HuRef
CHM1_1	9	22,446,555 - 22,452,185 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	22,461,237 - 22,470,151 (+)	NCBI		T2T-CHM13v2.0

Dmrta1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	89,576,435 - 89,583,003 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	89,567,673 - 89,583,009 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	89,688,198 - 89,694,766 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	89,679,436 - 89,694,772 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	89,354,889 - 89,361,457 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	89,180,216 - 89,186,784 (+)	NCBI		MGSCv36	mm8
Celera	4	88,147,830 - 88,154,392 (+)	NCBI		Celera
Cytogenetic Map	4	C4	NCBI
cM Map	4	42.15	NCBI

Dmrta1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955472	11,923,796 - 11,925,127 (-)	NCBI	ChiLan1.0	ChiLan1.0

DMRTA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	102,107,167 - 102,112,823 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	102,109,835 - 102,118,768 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	22,280,250 - 22,289,180 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	22,895,686 - 22,901,290 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	22,895,891 - 22,900,745 (+)	Ensembl	panpan1.1		panPan2

DMRTA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	41,566,159 - 41,571,649 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	41,566,174 - 41,571,166 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	40,244,756 - 40,250,250 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	42,505,472 - 42,510,935 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	42,505,472 - 42,510,687 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	41,178,729 - 41,184,192 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	41,066,582 - 41,072,081 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	41,680,502 - 41,685,988 (+)	NCBI		UU_Cfam_GSD_1.0

Dmrta1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	156,239,707 - 156,245,340 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936652	3,908,542 - 3,915,388 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936652	3,909,238 - 3,915,415 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DMRTA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	200,406,764 - 200,414,334 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	200,410,020 - 200,414,904 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	223,542,194 - 223,549,436 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Dmrta1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	26,309,744 - 26,318,326 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624736	26,309,929 - 26,318,249 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Dmrta1
17 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	790
Count of miRNA genes:	302
Interacting mature miRNAs:	391
Transcripts:	ENSRNOT00000038972
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	79584860	124584860	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	79584860	124584860	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
1582212	Livw2	Liver weight QTL 2	3.5	0.0004	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	5	99016066	119085810	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
7394708	Emca11	Estrogen-induced mammary cancer QTL 11			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	99753548	113061097	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	79584860	124584860	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	90067849	128034027	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84132602	129132602	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	64719390	109719390	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	90067849	128034027	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat

D5Mit5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	104,250,862 - 104,251,008 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	108,092,659 - 108,092,802	NCBI	Rnor6.0
Rnor_5.0	5	112,057,862 - 112,058,005	UniSTS	Rnor5.0
RGSC_v3.4	5	109,163,281 - 109,163,425	RGD	RGSC3.4
RGSC_v3.4	5	109,163,282 - 109,163,425	UniSTS	RGSC3.4
RGSC_v3.1	5	109,168,508 - 109,168,651	RGD
Celera	5	102,964,236 - 102,964,379	UniSTS
RH 3.4 Map	5	744.8	UniSTS
RH 3.4 Map	5	744.8	RGD
RH 2.0 Map	5	676.5	RGD
SHRSP x BN Map	5	58.1599	RGD
FHH x ACI Map	5	52.48	RGD
Cytogenetic Map	5	q32	UniSTS

BF389091

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	104,410,894 - 104,411,055 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	108,273,219 - 108,273,379	NCBI	Rnor6.0
Rnor_5.0	5	112,238,274 - 112,238,434	UniSTS	Rnor5.0
RGSC_v3.4	5	109,332,769 - 109,332,929	UniSTS	RGSC3.4
Celera	5	103,116,755 - 103,116,915	UniSTS
RH 3.4 Map	5	745.5	UniSTS
Cytogenetic Map	5	q32	UniSTS

BF397897

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	104,422,245 - 104,422,380 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	108,284,570 - 108,284,704	NCBI	Rnor6.0
Rnor_5.0	5	112,249,625 - 112,249,759	UniSTS	Rnor5.0
RGSC_v3.4	5	109,344,120 - 109,344,254	UniSTS	RGSC3.4
Celera	5	103,128,110 - 103,128,244	UniSTS
RH 3.4 Map	5	745.5	UniSTS
Cytogenetic Map	5	q32	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
6	11	35	111	47	45	18	20	18	6	131	76	93	23	59	27


RefSeq Transcripts	NM_001107945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000038972 ⟹ ENSRNOP00000032876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	104,415,893 - 104,422,433 (+)	Ensembl
Rnor_6.0 Ensembl	5	108,278,217 - 108,284,757 (+)	Ensembl

RefSeq Acc Id:

NM_001107945 ⟹ NP_001101415

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	109,531,704 - 109,538,244 (+)	NCBI
mRatBN7.2	5	104,415,893 - 104,422,433 (+)	NCBI
Rnor_6.0	5	108,278,217 - 108,284,757 (+)	NCBI
Rnor_5.0	5	112,243,272 - 112,249,812 (+)	NCBI
RGSC_v3.4	5	109,337,767 - 109,344,307 (+)	RGD
Celera	5	103,121,749 - 103,128,297 (+)	RGD

Sequence:

show sequence

GTGCGTGGAGCAGGACAGCGGGACCTAGGCCGGTCCTCAGCGGATATCTCTACAGGGTCGCTCTGGACAGCGCGCCCTTGCTGGTTTCCACTCCTCAGAAGCGACTTCTCACAATGGAGCAATTTCCT
CGTAGAGACCGCAGTGGCGGGTGCCGACCCCATCTGGGCCCAGGGCGGGCTGTTGCTCCCGCTTCGGCTGCGCGGTCGGTGTCGTCGGGGATCCCGGTGTCCGCGACTTTCCTAAGGCCGCCTGGCCT
TTTTCTGCGATCCACCGCAAGTGCGGGTCGCGCAGGATGCGTTCCGGGTCCTGGGCTGGATAGGGCGTTGGGGGCGGTGGGCTGCGGCTACCCGCGGACCCCGAAGTGCGCCCGTTGTCGCAACCATG
GCGTGGTGTCAGCGCTCAAGGGCCACAAGCGCTTCTGCCGCTGGCGGGACTGCGCGTGTGCCAAGTGCACCCTGATCGCCGAGCGCCAGCGTGTCATGGCCGCGCAGGTGGCGCTGCGCAGGCAGCAG
GCGCAGGAGGAGAGCGAGGCCCGTGGGCTGCACAGGCTCCTGTACCAGGGGCCATCGGGGCCCGGGGCTCCAGCCTCGGGGGGCAGCGGCAGGACCGAGAGTCCCCAGGTTTTGAGTAGCCCCATGAC
TGTAGCTGCTCTGGGAGCGGGTGCCTCTAGACACCCTGGGAGCCGGTCTGTCCCAGCTTTCGAGGTTTTCCAGCAAGATTTTGCTGAGAGAAAGCAGGAACCAAAACAGAGTAACTGTGAGTCATGCC
AGAGTAGACACGAAGAACCAGTCTCCAACACTCATCACCGTTCTCCGGGATCATCTAACGGTAATGTTACCATGGAGAAACAGGGCTTCATGTCATCTATTTCAGAACAGTCGGACAAATCGACCATC
ATCCTGTCTCCTTGCCCCACGGATCAGTCAGGAGGAGAAGACAGCCCCAGGTCCTTCTCTTCCTCTGACCTGGAATCAGGGAATGAAAGCGAGTGGGCCAGAGACTACACTGCTACCACAGCCAGCCT
TTCCACGGTGACCTCAAGACCACGAGACCCTCTCGGAATTCTTACCAGGATTTTTCCAGGTTACAAGCGTAGCCGCTTAGAAGGCATCCTACAGTTCTGCAAGGGAGATGTAGTCCAAGCCATTGAAC
AGATCTTAAATGGGAAAGAACATAAGCCAGACTGCAGGGACCTAGCACATGCAGACTTGGAAAATGCAGCCTTTCAGAGGGCTTCAGATTTTAGTCTTGCTGGCATTGGCTTTGGGACTCTAAATAAT
AAATCAGCTCTCTCTCCTCTTGAAGCTGCGTCTGCTGCTTACGGAGGAGATTCATCTCTCTACAGTTTCAATCCTAGGCTAGCTTTCAGCCCACTGCGCCTGGCATATTCTTCTCCAGGAAGAGCACT
GTCTGGTTTTATGTCGCCTTACCTAACGCCTGGACTCGTTCCAGCATTGCCTTTTCGGCCAACTTTGGATTATGCATTTCCAGGGATGATTAGGGAGCCGCCCCACCTTCCTAGCAAACATTTAGTAA
CTGGTGGTAGACTGTATTTCAGGCCCAATCAGGAGCACCTGTAACATATTCACTCTACCATTCTGTGGTGTTTCTGGAGCCATGCAACACATACACACACAGGCACGCACACACGCATGTACGCACAC
ACCCTTATTAATGTACTTCAAAGAGCATAAGAATGACCTCTCAGTCTTAATTGCTATTTTTCTAAGCAGTGTAATATATTTTAGATTTTCTTTAGCATTTATTAAATCAAAAAGCATTTAATCATTAT
ATATGCCTTGAATAAACTTATTTCAGGAAATACTATTATTTTAAACTAATGAATTTTCTCCCTAAATTATCACTTTTATTATAAAGTCATACATGCTTTTATTTTATTGTACAGTTGGGGTTATAGTT
GTGAACATGTGTAAAAAGAAATTCGTATGGCAGAATATGAACCAGGAGTGGGAGATTGTGGTTATTATTCTAAAACAACTCTATCTTCCCCTCTTCCTTTTTCCCTCCCGTCTTTTCCTCCTCCACCA
CAGATGAGCCAGAAATTGTTCCAAGTATTTAAAAACATTTTATTTGCTGATAAATGACCAATAGTAAGCAATCCTAATAAATTTGAATATATTTTTTGGAATGTCCGTTTTTGTACTCTTTAGCTACT
ATTTGTAGAAAGGAAATATTTTTGAATGTTCTCTTTAAAGTTATTGTAAATGCACAAAGAACTTTAGGGTCATAAGAAGCAAGACCCTGCCCTCTTCTGGCCACTATCACAAACTGCAATTCAGTTCT
GAGAAAACAAGTGGTTTTCTAACTGTTACAGACTAACACGTTTGTGAAGTAACCATTTTGGATCATGGTGTATTTATTTTCATGTTTTGAAATGTTTTCTCTTAAGGATAATTTTTGAGTAGCTTATG
CTTTTATCTGGGGATACAGTCCTTATCATTTGTTTTAGATAACTTGTCACCCATTCTCAAAGGTAAGAAGAAATTATTCAACAACCAAGTTATCTGCTCAGATAAATATCTACTGATTCTATATAAAG
TATATTTAATGTATTTAGTAGAGACAAAATTTCCAAAGGTCAGTAAAACTTGCTGCCTTTAAAAACTTAGTGGTGTTCTAGAGTCTTAAGGCATCCATTTCTTTCCCCACCTGGAGCATTTAAAATCA
TCCATCTAGCATTTCAATTCAGCCACTGGGAAGCCCCAGGAAAAAACGGCTCATGGAACACCTGTACAATGTTTTCCTCATGTGCCTTAAGTTTTAAACGGACAATGGCTTCACTGTATTGTGGAGAA
TAATGAAGACTCAGATGTGGTAGGAATTGGAGATATCTTTATCTGAGCAGCAAGAATCACTAGACATTTTTTAAAATTATTTTTACATATGTGTGTCCTTTCCACTAAGCTAATAAGTTTTCACAGTG
TATTTTACCAAAAAAAAAAAAAATCTAATGCATGACTGGAGAGTATCTCATGCTGATTTGGAATGCAACGTGTTTAACAATTTGCATAAATGTTAATGGAGCAGGATGGAGGAACAGTCTGTAAAATG
TAGGTGGATACACTGCTCACCTTTTGTGTGCAAAACAAAATGGAGAAACCCTTCAGGCTCAGAGCCTGAATACTGTACGAAGTCTGGCAACCAATTGCTCTGCAGCCAACATATATTAAGATCAGACT
GATTTTGGATGATGGCTCTTTCAACCAAATGATTCTACCAAGTGGCCCGTTAGTACACGACTGTGAGTAGTTTCCTGAGATTCTATGTCTCCTAAAATGTATTCAGATCAGGACACTTGGTGACCCTA
GAGTTGTTTTTATTTTATGAATCTACTATCTACATTCTATTTTTGAGATACAGTAGATCCTGTTCAGGACGTCAAATGTACAGTATGATGTAAAGAGAGCTTTAGTAAATGGCAGAAATCTGGATGAA
AAGTACAGCAATTCTAGCATTGCTGGATTCTTCATAAAATTAACATAACAATGTGAGCATATTGGCTGTGTGGTGATGGCCACCTTTAATCCCAGCATTCAGAAGGCAGAGGCAGATAAATCTCTAAG
TTAAAGGCCAGCCTGGTCTACAAAATGAGCTCCAGAACAGCCATGGCTACATAGAGAAACTCTGTCTTAAAAACAAAACAAAACAAACAATAACAAAAACATGTGGACATATTATTTTAATTATCTAA
ATATTAAGTTAATTTTCATGATGCACTATATAGTCTAAACAATTCATACCACTCTTAAGACCTAAATAACTTTATAAAATAGGAAATTCTTCCAACTACCAGCTAGACATTGAGGAAACCGAAGCTCA
GATCTGTATAATCAGTCCCAAGGGTAATAATAGTATGAGTTACCAGGAAGGCTTTCTTACTTTAGTAATTTGAGACTGTTAGATATGAGAAAGGATTATGCATGTTTCGTTGCAGCTTTGTGTGGTGT
CTGATGCATAATATGTGGCAAATAGTACCTCATTATTTACTGATTAATAAAAGTATTAGATG

hide sequence


Protein RefSeqs	NP_001101415	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL97747	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000032876
	ENSRNOP00000032876.4

RefSeq Acc Id:

NP_001101415 ⟸ NM_001107945

- UniProtKB:

D3ZIZ0 (UniProtKB/TrEMBL), A6JRF5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEQFPRRDRSGGCRPHLGPGRAVAPASAARSVSSGIPVSATFLRPPGLFLRSTASAGRAGCVPGPGLDRALGAVGCGYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVA
LRRQQAQEESEARGLHRLLYQGPSGPGAPASGGSGRTESPQVLSSPMTVAALGAGASRHPGSRSVPAFEVFQQDFAERKQEPKQSNCESCQSRHEEPVSNTHHRSPGSSNGNVTMEKQGFMSSISEQS
DKSTIILSPCPTDQSGGEDSPRSFSSSDLESGNESEWARDYTATTASLSTVTSRPRDPLGILTRIFPGYKRSRLEGILQFCKGDVVQAIEQILNGKEHKPDCRDLAHADLENAAFQRASDFSLAGIGF
GTLNNKSALSPLEAASAAYGGDSSLYSFNPRLAFSPLRLAYSSPGRALSGFMSPYLTPGLVPALPFRPTLDYAFPGMIREPPHLPSKHLVTGGRLYFRPNQEHL

hide sequence

Ensembl Acc Id:

ENSRNOP00000032876 ⟸ ENSRNOT00000038972

Protein Domains

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZIZ0-F1-model_v2	AlphaFold	D3ZIZ0	1-488	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-40761	BioCyc
Ensembl Genes	ENSRNOG00000024093	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000038972	ENTREZGENE
	ENSRNOT00000038972.5	UniProtKB/TrEMBL
Gene3D-CATH	4.10.1040.10	UniProtKB/TrEMBL
InterPro	DM_DNA-bd	UniProtKB/TrEMBL
	DM_DNA-bd_sf	UniProtKB/TrEMBL
	DMA	UniProtKB/TrEMBL
	DMRT/dsx/mab-3	UniProtKB/TrEMBL
	DMRT5_1_DMB_dom	UniProtKB/TrEMBL
	UBA-like	UniProtKB/TrEMBL
KEGG Report	rno:313352	UniProtKB/TrEMBL
NCBI Gene	313352	ENTREZGENE
PANTHER	DOUBLESEX- AND MAB-3-RELATED TRANSCRIPTION FACTOR A1	UniProtKB/TrEMBL
	PTHR12322	UniProtKB/TrEMBL
Pfam	DMA	UniProtKB/TrEMBL
	DMRT5_DMB	UniProtKB/TrEMBL
	PF00751	UniProtKB/TrEMBL
PhenoGen	Dmrta1	PhenoGen
PROSITE	DM_1	UniProtKB/TrEMBL
	DM_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000024093	RatGTEx
SMART	SM00301	UniProtKB/TrEMBL
Superfamily-SCOP	DM_DNA_bd	UniProtKB/TrEMBL
	UBA_like	UniProtKB/TrEMBL
UniProt	A6JRF5	ENTREZGENE, UniProtKB/TrEMBL
	D3ZIZ0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-17	Dmrta1	DMRT-like family A1	Dmrta1	doublesex and mab-3 related transcription factor like family A1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Dmrta1	doublesex and mab-3 related transcription factor like family A1	Dmrta1_predicted	doublesex and mab-3 related transcription factor like family A1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Dmrta1_predicted	doublesex and mab-3 related transcription factor like family A1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar