Ranbp3l (RAN binding protein 3-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ranbp3l (RAN binding protein 3-like) Rattus norvegicus
Analyze
Symbol: Ranbp3l
Name: RAN binding protein 3-like
RGD ID: 1307559
Description: Predicted to enable SMAD binding activity. Predicted to be involved in mesenchymal cell differentiation involved in bone development; negative regulation of osteoblast differentiation; and positive regulation of myoblast differentiation. Orthologous to human RANBP3L (RAN binding protein 3 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acrylamide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102551932; LOC294789; ran-binding protein 3-like; RGD1307559; similar to Hypothetical protein FLJ25422; uncharacterized LOC102551932
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8259,785,070 - 59,840,338 (+)NCBIGRCr8
mRatBN7.2258,057,887 - 58,113,158 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl258,058,263 - 58,113,172 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0258,221,773 - 58,458,072 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl258,448,917 - 58,458,517 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0276,758,985 - 76,772,450 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0277,510,913 - 77,544,728 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4258,666,640 - 58,720,647 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1258,590,213 - 58,649,178 (+)NCBI
Celera253,666,881 - 53,721,420 (+)NCBICelera
Cytogenetic Map2q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25755279  


Genomics

Comparative Map Data
Ranbp3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8259,785,070 - 59,840,338 (+)NCBIGRCr8
mRatBN7.2258,057,887 - 58,113,158 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl258,058,263 - 58,113,172 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0258,221,773 - 58,458,072 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl258,448,917 - 58,458,517 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0276,758,985 - 76,772,450 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0277,510,913 - 77,544,728 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4258,666,640 - 58,720,647 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1258,590,213 - 58,649,178 (+)NCBI
Celera253,666,881 - 53,721,420 (+)NCBICelera
Cytogenetic Map2q16NCBI
RANBP3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38536,246,913 - 36,301,902 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl536,246,913 - 36,302,114 (-)EnsemblGRCh38hg38GRCh38
GRCh37536,247,015 - 36,302,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36536,284,861 - 36,337,761 (-)NCBINCBI36Build 36hg18NCBI36
Celera536,134,779 - 36,187,682 (-)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef536,200,738 - 36,253,651 (-)NCBIHuRef
CHM1_1536,251,851 - 36,304,761 (-)NCBICHM1_1
T2T-CHM13v2.0536,495,219 - 36,550,209 (-)NCBIT2T-CHM13v2.0
Ranbp3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,997,209 - 9,071,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,997,433 - 9,067,417 (+)EnsemblGRCm39 Ensembl
GRCm38158,967,949 - 9,067,335 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,967,949 - 9,067,335 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,918,119 - 8,956,192 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37158,985,428 - 8,997,084 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,982,561 - 8,994,217 (+)NCBIMGSCv36mm8
Celera158,812,846 - 8,880,770 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.82NCBI
Ranbp3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542621,052,647 - 21,107,110 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542621,054,463 - 21,106,290 (-)NCBIChiLan1.0ChiLan1.0
RANBP3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2474,027,847 - 74,081,610 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1572,181,479 - 72,236,614 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0574,061,669 - 74,115,154 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1579,343,218 - 79,396,901 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl579,343,218 - 79,396,121 (+)Ensemblpanpan1.1panPan2
NADK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1472,297,480 - 72,341,176 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl472,297,114 - 72,339,460 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha471,907,202 - 71,950,907 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0472,805,112 - 72,848,811 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl472,804,721 - 72,848,810 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1472,550,564 - 72,594,244 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0472,674,148 - 72,717,850 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0473,207,561 - 73,251,269 (+)NCBIUU_Cfam_GSD_1.0
Ranbp3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213225,773,116 - 225,840,760 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365185,531,004 - 5,579,942 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365185,531,094 - 5,579,471 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1621,562,916 - 21,611,885 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11621,562,907 - 21,612,389 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21622,580,457 - 22,607,286 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1435,095,520 - 35,156,378 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl435,096,196 - 35,155,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607125,426,557 - 25,477,496 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475918,710,586 - 18,771,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475918,710,876 - 18,769,727 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ranbp3l
389 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1354592Rf50Renal function QTL 503.5urine output (VT:0003620)timed urine volume (CMO:0000260)25382274774786777Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)25653191259324719Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25666087974786777Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)25760561276539510Rat

Markers in Region
BF388204  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2258,084,755 - 58,084,948 (+)MAPPERmRatBN7.2
Rnor_6.0258,145,222 - 58,145,414NCBIRnor6.0
Rnor_5.0277,518,799 - 77,518,991UniSTSRnor5.0
RGSC_v3.4258,692,771 - 58,692,963UniSTSRGSC3.4
Celera253,693,694 - 53,693,886UniSTS
RH 3.4 Map2332.4UniSTS
Cytogenetic Map2q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 46 23 1 1
Low 3 33 12 7 14 7 7 8 20 12 39 10 7
Below cutoff 10 43 32 5 32 1 2 8 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006224035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000082562   ⟹   ENSRNOP00000070782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl258,058,263 - 58,113,172 (+)Ensembl
Rnor_6.0 Ensembl258,448,917 - 58,458,517 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100816   ⟹   ENSRNOP00000077562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl258,058,263 - 58,113,172 (+)Ensembl
RefSeq Acc Id: XM_039103541   ⟹   XP_038959469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,071 - 59,840,338 (+)NCBI
mRatBN7.2258,057,888 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103542   ⟹   XP_038959470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,072 - 59,840,338 (+)NCBI
mRatBN7.2258,057,889 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103543   ⟹   XP_038959471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,073 - 59,840,338 (+)NCBI
mRatBN7.2258,057,890 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103544   ⟹   XP_038959472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,074 - 59,840,338 (+)NCBI
mRatBN7.2258,057,892 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103545   ⟹   XP_038959473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,074 - 59,840,338 (+)NCBI
mRatBN7.2258,057,891 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103546   ⟹   XP_038959474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,824,609 - 59,840,338 (+)NCBI
mRatBN7.2258,097,423 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103547   ⟹   XP_038959475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,826,236 - 59,840,338 (+)NCBI
mRatBN7.2258,099,052 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103548   ⟹   XP_038959476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,070 - 59,837,622 (+)NCBI
mRatBN7.2258,057,887 - 58,110,442 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000070782   ⟸   ENSRNOT00000082562
RefSeq Acc Id: XP_038959476   ⟸   XM_039103548
- Peptide Label: isoform X7
- UniProtKB: A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959469   ⟸   XM_039103541
- Peptide Label: isoform X1
- UniProtKB: A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959470   ⟸   XM_039103542
- Peptide Label: isoform X2
- UniProtKB: A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959471   ⟸   XM_039103543
- Peptide Label: isoform X3
- UniProtKB: A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959473   ⟸   XM_039103545
- Peptide Label: isoform X5
- UniProtKB: A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959472   ⟸   XM_039103544
- Peptide Label: isoform X4
- UniProtKB: A0A8I5YCF1 (UniProtKB/TrEMBL),   A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959474   ⟸   XM_039103546
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038959475   ⟸   XM_039103547
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000077562   ⟸   ENSRNOT00000100816
Protein Domains
RanBD1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MJ81-F1-model_v2 AlphaFold A0A096MJ81 1-241 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307559 AgrOrtholog
BioCyc Gene G2FUF-54109 BioCyc
Ensembl Genes ENSRNOG00000052173 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082562.2 UniProtKB/TrEMBL
  ENSRNOT00000100816.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  Ran_bind_dom UniProtKB/TrEMBL
  RanBP1-like UniProtKB/TrEMBL
NCBI Gene 294789 ENTREZGENE
PANTHER PTHR23138 UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 3-LIKE UniProtKB/TrEMBL
Pfam Ran_BP1 UniProtKB/TrEMBL
PhenoGen Ranbp3l PhenoGen
PROSITE RANBD1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000052173 RatGTEx
SMART RanBD UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A096MJ81 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YCF1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ranbp3l  RAN binding protein 3-like  LOC102551932  uncharacterized LOC102551932  Data merged from RGD:7735791 737654 PROVISIONAL
2013-12-18 LOC102551932  uncharacterized LOC102551932      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-07 Ranbp3l  RAN binding protein 3-like  RGD1307559_predicted  similar to Hypothetical protein FLJ25422 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1307559_predicted  similar to Hypothetical protein FLJ25422 (predicted)  LOC294789_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294789_predicted  similar to Hypothetical protein FLJ25422 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL