RANBP3L (RAN binding protein 3 like) - Rat Genome Database

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Gene: RANBP3L (RAN binding protein 3 like) Pan paniscus
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Symbol: RANBP3L
Name: RAN binding protein 3 like
RGD ID: 11947862
Description: ENCODES a protein that exhibits SMAD binding (inferred); INVOLVED IN intracellular transport (inferred); mesenchymal cell differentiation involved in bone development (inferred); negative regulation of osteoblast differentiation (inferred); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ran-binding protein 3-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2474,027,847 - 74,081,610 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1572,181,479 - 72,236,614 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0574,061,669 - 74,115,154 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1579,343,218 - 79,396,901 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl579,343,218 - 79,396,121 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RANBP3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2474,027,847 - 74,081,610 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1572,181,479 - 72,236,614 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0574,061,669 - 74,115,154 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1579,343,218 - 79,396,901 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl579,343,218 - 79,396,121 (+)Ensemblpanpan1.1panPan2
RANBP3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38536,246,913 - 36,301,902 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl536,246,913 - 36,302,114 (-)EnsemblGRCh38hg38GRCh38
GRCh37536,247,015 - 36,302,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36536,284,861 - 36,337,761 (-)NCBINCBI36Build 36hg18NCBI36
Celera536,134,779 - 36,187,682 (-)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef536,200,738 - 36,253,651 (-)NCBIHuRef
CHM1_1536,251,851 - 36,304,761 (-)NCBICHM1_1
T2T-CHM13v2.0536,495,219 - 36,550,209 (-)NCBIT2T-CHM13v2.0
Ranbp3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,997,209 - 9,071,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,997,433 - 9,067,417 (+)EnsemblGRCm39 Ensembl
GRCm38158,967,949 - 9,067,335 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,967,949 - 9,067,335 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,918,119 - 8,956,192 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37158,985,428 - 8,997,084 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,982,561 - 8,994,217 (+)NCBIMGSCv36mm8
Celera158,812,846 - 8,880,770 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.82NCBI
Ranbp3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8259,785,070 - 59,840,338 (+)NCBIGRCr8
mRatBN7.2258,057,887 - 58,113,158 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl258,058,263 - 58,113,172 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0258,221,773 - 58,458,072 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl258,448,917 - 58,458,517 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0276,758,985 - 76,772,450 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0277,510,913 - 77,544,728 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4258,666,640 - 58,720,647 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1258,590,213 - 58,649,178 (+)NCBI
Celera253,666,881 - 53,721,420 (+)NCBICelera
Cytogenetic Map2q16NCBI
Ranbp3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542621,052,647 - 21,107,110 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542621,054,463 - 21,106,290 (-)NCBIChiLan1.0ChiLan1.0
NADK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1472,297,480 - 72,341,176 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl472,297,114 - 72,339,460 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha471,907,202 - 71,950,907 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0472,805,112 - 72,848,811 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl472,804,721 - 72,848,810 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1472,550,564 - 72,594,244 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0472,674,148 - 72,717,850 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0473,207,561 - 73,251,269 (+)NCBIUU_Cfam_GSD_1.0
Ranbp3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213225,773,116 - 225,840,760 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365185,531,004 - 5,579,942 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365185,531,094 - 5,579,471 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1621,562,916 - 21,611,885 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11621,562,907 - 21,612,389 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21622,580,457 - 22,607,286 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1435,095,520 - 35,156,378 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl435,096,196 - 35,155,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607125,426,557 - 25,477,496 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475918,710,586 - 18,771,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475918,710,876 - 18,769,727 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000040215   ⟹   ENSPPAP00000017508
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl579,343,218 - 79,396,121 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000040220   ⟹   ENSPPAP00000017513
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl579,343,218 - 79,396,121 (+)Ensembl
RefSeq Acc Id: XM_003806651   ⟹   XP_003806699
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,848 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
Mhudiblu_PPA_v0574,061,670 - 74,115,154 (+)NCBI
PanPan1.1579,343,218 - 79,396,121 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003806652   ⟹   XP_003806700
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,849 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
Mhudiblu_PPA_v0574,061,670 - 74,115,154 (+)NCBI
PanPan1.1579,343,218 - 79,396,121 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024928834   ⟹   XP_024784602
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,849 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
Mhudiblu_PPA_v0574,061,670 - 74,115,154 (+)NCBI
PanPan1.1579,343,218 - 79,396,121 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024928835   ⟹   XP_024784603
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,849 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
Mhudiblu_PPA_v0574,061,670 - 74,115,154 (+)NCBI
PanPan1.1579,343,218 - 79,396,121 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034960163   ⟹   XP_034816054
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,848 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
Mhudiblu_PPA_v0574,061,670 - 74,115,154 (+)NCBI
RefSeq Acc Id: XM_034960164   ⟹   XP_034816055
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,848 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
Mhudiblu_PPA_v0574,061,670 - 74,115,154 (+)NCBI
RefSeq Acc Id: XM_034960165   ⟹   XP_034816056
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,849 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
Mhudiblu_PPA_v0574,061,670 - 74,115,154 (+)NCBI
RefSeq Acc Id: XM_034960166   ⟹   XP_034816057
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,849 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
Mhudiblu_PPA_v0574,061,670 - 74,115,154 (+)NCBI
RefSeq Acc Id: XM_034960167   ⟹   XP_034816058
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,847 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,479 - 72,234,563 (+)NCBI
Mhudiblu_PPA_v0574,061,669 - 74,115,154 (+)NCBI
RefSeq Acc Id: XM_055112432   ⟹   XP_054968407
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,849 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
RefSeq Acc Id: XM_055112433   ⟹   XP_054968408
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,849 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
RefSeq Acc Id: XM_055112434   ⟹   XP_054968409
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,849 - 74,081,610 (+)NCBI
NHGRI_mPanPan1572,181,480 - 72,234,563 (+)NCBI
RefSeq Acc Id: XM_063604508   ⟹   XP_063460578
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2474,027,847 - 74,081,610 (+)NCBI
RefSeq Acc Id: XP_003806700   ⟸   XM_003806652
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AK96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003806699   ⟸   XM_003806651
- Peptide Label: isoform X6
- UniProtKB: A0A2R9AKA0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024784602   ⟸   XM_024928834
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_024784603   ⟸   XM_024928835
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_034816058   ⟸   XM_034960167
- Peptide Label: isoform X12
RefSeq Acc Id: XP_034816054   ⟸   XM_034960163
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034816056   ⟸   XM_034960165
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034816055   ⟸   XM_034960164
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034816057   ⟸   XM_034960166
- Peptide Label: isoform X7
Ensembl Acc Id: ENSPPAP00000017508   ⟸   ENSPPAT00000040215
Ensembl Acc Id: ENSPPAP00000017513   ⟸   ENSPPAT00000040220
RefSeq Acc Id: XP_054968407   ⟸   XM_055112432
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054968409   ⟸   XM_055112434
- Peptide Label: isoform X11
RefSeq Acc Id: XP_054968408   ⟸   XM_055112433
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063460578   ⟸   XM_063604508
- Peptide Label: isoform X13
Protein Domains
RanBD1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031849 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040215.1 UniProtKB/TrEMBL
  ENSPPAT00000040220.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  Ran_bind_dom UniProtKB/TrEMBL
  RanBP1-like UniProtKB/TrEMBL
KEGG Report pps:100977610 UniProtKB/TrEMBL
NCBI Gene RANBP3L ENTREZGENE
PANTHER PTHR23138 UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 3-LIKE UniProtKB/TrEMBL
Pfam Ran_BP1 UniProtKB/TrEMBL
PROSITE RANBD1 UniProtKB/TrEMBL
SMART RanBD UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A2R9AK96 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AKA0 ENTREZGENE, UniProtKB/TrEMBL